LOC110507259


Basic Information

Item Value
gene id LOC110507259
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 4670439 ~ 4674088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471094.2
caaattcttattttcaatgactgccttgcaaccttccggttcctagtccaactctctaaccactaggctaccctgccgccccaataactATTGCTGatacaaaacaaacattttccgAGGCCAAAAACATTAGCTAAAGTAACGCGTTAGCAGACCTGTGTTTGACCAAGGAAGATGTGTGCCTTTCTCAAACACTcaccttcggcttccacgtgggTTTGGCAGTATCTTGGAGGGGTTGGTTCGAGAGGTCATCCCCACGTTTGCGGCATTTTACTTCCCCGCTCTTCTCAAAGAACGAGAAGAGAGTGGCCTGGAGTGGTGTGCCAGGCTAGAGGACAGATTCTCCAACAATCATGCATTCAATAACTCACCGAATCAAGTCAACACCAATCCAGCTGATGCATCTCTGAAGATTTCTGAGTGAGTCTCATCTCAGCACATTATCTACACCCAAGGAGAGGGACAACATCAGACCGCTTTTTTCCCACATATTTAATTGAAAGAAAAGAACAAGAGAGACCAAGAAAAGTCTTATGGAGAaaataaatgtggctcaattgCCGTGTTGTTTTATTGCTCATTGTAatggatctcgtcctcctcttctgaggaggagtaacgagaaggatcggaggaccaaaa

Function

NR:

description
PREDICTED: sperm surface protein Sp17 isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471094.2 True 645 mRNA 0.45 4 4670439 4674088

Neighbor

gene id symbol gene type direction distance location
LOC110507258 LOC106612424 coding upstream 166 4667537 ~ 4670273 (+)
ankk1 NA coding upstream 223186 4437387 ~ 4447253 (+)
ttc12 NA coding upstream 249059 4383264 ~ 4421380 (+)
si:dkey-103g5.4 NA coding upstream 309319 4312281 ~ 4361120 (+)
LOC118944636 NA coding upstream 360181 4307237 ~ 4310258 (+)
LOC110507374 spa17 coding downstream 11780 4685868 ~ 4692872 (+)
hepacama LOC106612425 coding downstream 21634 4695722 ~ 4703620 (+)
LOC110507376 LOC106612467 coding downstream 34961 4709049 ~ 4724979 (+)
LOC110507377 LOC106612468 coding downstream 69590 4743678 ~ 4773061 (+)
LOC110507378 tm136 coding downstream 99210 4773298 ~ 4789016 (+)
G2043559 NA non-coding upstream 217241 4452950 ~ 4453198 (+)
G2043200 NA non-coding upstream 252208 4417994 ~ 4418231 (+)
G2043199 NA non-coding upstream 253611 4416499 ~ 4416828 (+)
G2043198 NA non-coding upstream 255690 4414473 ~ 4414749 (+)
G2043196 NA non-coding upstream 260215 4409990 ~ 4410224 (+)
G2043904 NA non-coding downstream 409544 5083632 ~ 5105824 (+)
G2043754 NA non-coding downstream 657045 5331133 ~ 5332221 (+)
G2043755 NA non-coding downstream 659155 5333243 ~ 5333478 (+)
G2044047 NA non-coding downstream 661229 5335317 ~ 5335626 (+)
cbl cbl non-coding downstream 763904 5375556 ~ 5514824 (+)
G2043193 NA other upstream 264313 4405458 ~ 4406126 (+)
G2040882 NA other upstream 1831512 2834096 ~ 2838927 (+)
LOC110507334 LOC106612406 other upstream 1855098 2813649 ~ 2815411 (+)
G2040863 NA other upstream 1868438 2799781 ~ 2802001 (+)
rpl35a LOC106612432 other upstream 1984701 2670319 ~ 2685738 (+)
LOC110507397 sfr16 other downstream 1217759 5874691 ~ 5896127 (+)
LOC110507398 znf296 other downstream 1223429 5897208 ~ 5910058 (+)
G2045522 NA other downstream 1820745 6494833 ~ 6495134 (+)
G2045655 NA other downstream 2018456 6692544 ~ 6693044 (+)

Expression


Co-expression Network