Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110507374 |
| gene name | spa17 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048591.1 |
| NCBI id | CM023245.2 |
| chromosome length | 51556237 |
| location | 4685868 ~ 4692872 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| spa17 | Predicted to enable calmodulin binding activity. Acts upstream of or within cilium movement. Located in motile cilium. Orthologous to human SPA17 (sperm autoantigenic protein 17). |
| description |
|---|
| PREDICTED: sperm surface protein Sp17 isoform X6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021587321.2 | False | 2084 | mRNA | 0.42 | 3 | 4685868 | 4691150 |
| TU2337846 | False | 2044 | TUCP | 0.42 | 3 | 4685885 | 4691127 |
| TU2337845 | False | 3759 | TUCP | 0.40 | 3 | 4685915 | 4692872 |
| TU2337847 | True | 2014 | TUCP | 0.42 | 3 | 4685915 | 4691127 |
4,683,000
4,684,000
4,685,000
4,686,000
4,687,000
4,688,000
4,689,000
4,690,000
4,691,000
4,692,000
4,692,000
4,693,000
4,694,000
4,695,000
4,696,000
4,697,000
4,698,000
4,699,000
4,700,000
4,701,000
NC_048591.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110507259 | NA | coding | upstream | 11780 | 4670439 ~ 4674088 (+) |
| LOC110507258 | LOC106612424 | coding | upstream | 15595 | 4667537 ~ 4670273 (+) |
| ankk1 | NA | coding | upstream | 238615 | 4437387 ~ 4447253 (+) |
| ttc12 | NA | coding | upstream | 264488 | 4383264 ~ 4421380 (+) |
| si:dkey-103g5.4 | NA | coding | upstream | 324748 | 4312281 ~ 4361120 (+) |
| hepacama | LOC106612425 | coding | downstream | 4572 | 4695722 ~ 4703620 (+) |
| LOC110507376 | LOC106612467 | coding | downstream | 17899 | 4709049 ~ 4724979 (+) |
| LOC110507377 | LOC106612468 | coding | downstream | 52528 | 4743678 ~ 4773061 (+) |
| LOC110507378 | tm136 | coding | downstream | 82148 | 4773298 ~ 4789016 (+) |
| LOC110507381 | tm136 | coding | downstream | 82156 | 4773306 ~ 4777981 (+) |
| G2043559 | NA | non-coding | upstream | 232670 | 4452950 ~ 4453198 (+) |
| G2043200 | NA | non-coding | upstream | 267637 | 4417994 ~ 4418231 (+) |
| G2043199 | NA | non-coding | upstream | 269040 | 4416499 ~ 4416828 (+) |
| G2043198 | NA | non-coding | upstream | 271119 | 4414473 ~ 4414749 (+) |
| G2043196 | NA | non-coding | upstream | 275644 | 4409990 ~ 4410224 (+) |
| G2043904 | NA | non-coding | downstream | 392482 | 5083632 ~ 5105824 (+) |
| G2043754 | NA | non-coding | downstream | 639983 | 5331133 ~ 5332221 (+) |
| G2043755 | NA | non-coding | downstream | 642093 | 5333243 ~ 5333478 (+) |
| G2044047 | NA | non-coding | downstream | 644167 | 5335317 ~ 5335626 (+) |
| cbl | cbl | non-coding | downstream | 746842 | 5375556 ~ 5514824 (+) |
| G2043193 | NA | other | upstream | 279742 | 4405458 ~ 4406126 (+) |
| G2040882 | NA | other | upstream | 1846941 | 2834096 ~ 2838927 (+) |
| LOC110507334 | LOC106612406 | other | upstream | 1870527 | 2813649 ~ 2815411 (+) |
| G2040863 | NA | other | upstream | 1883867 | 2799781 ~ 2802001 (+) |
| rpl35a | LOC106612432 | other | upstream | 2000130 | 2670319 ~ 2685738 (+) |
| LOC110507397 | sfr16 | other | downstream | 1200697 | 5874691 ~ 5896127 (+) |
| LOC110507398 | znf296 | other | downstream | 1206367 | 5897208 ~ 5910058 (+) |
| G2045522 | NA | other | downstream | 1803683 | 6494833 ~ 6495134 (+) |
| G2045655 | NA | other | downstream | 2001394 | 6692544 ~ 6693044 (+) |
| G2045665 | NA | other | downstream | 2028614 | 6719764 ~ 6720692 (+) |
