Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110507382 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048591.1 |
| NCBI id | CM023245.2 |
| chromosome length | 51556237 |
| location | 4790174 ~ 4858588 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| rho guanine nucleotide exchange factor 12-like isoform X2 |
| id | description |
|---|---|
| K07532 | ARHGEF12, LARG; Rho guanine nucleotide exchange factor 12 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021587336.2 | False | 7002 | mRNA | 0.52 | 41 | 4790174 | 4858588 |
| XM_021587338.2 | False | 6948 | mRNA | 0.52 | 40 | 4790174 | 4858588 |
| XM_036965123.1 | False | 6665 | mRNA | 0.52 | 43 | 4790174 | 4858588 |
| XM_036965124.1 | False | 6621 | mRNA | 0.52 | 43 | 4790174 | 4858588 |
| XM_036965125.1 | False | 6070 | mRNA | 0.53 | 43 | 4790174 | 4858588 |
| XM_036965126.1 | False | 7062 | mRNA | 0.52 | 42 | 4790174 | 4858588 |
| XM_036965128.1 | False | 7005 | mRNA | 0.52 | 41 | 4790174 | 4858588 |
| XM_036965129.1 | False | 6945 | mRNA | 0.52 | 40 | 4790174 | 4858588 |
| XM_036965130.1 | True | 5686 | mRNA | 0.54 | 39 | 4831882 | 4858588 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110507378 | tm136 | coding | upstream | 1158 | 4773298 ~ 4789016 (+) |
| LOC110507381 | tm136 | coding | upstream | 12193 | 4773306 ~ 4777981 (+) |
| LOC110507377 | LOC106612468 | coding | upstream | 17113 | 4743678 ~ 4773061 (+) |
| LOC110507376 | LOC106612467 | coding | upstream | 65195 | 4709049 ~ 4724979 (+) |
| hepacama | LOC106612425 | coding | upstream | 86554 | 4695722 ~ 4703620 (+) |
| LOC110507051 | LOC106612471 | coding | downstream | 21340 | 4879928 ~ 5330923 (+) |
| LOC118944797 | NA | coding | downstream | 452366 | 5310954 ~ 5311006 (+) |
| cbl | cbl | coding | downstream | 516968 | 5375556 ~ 5514824 (+) |
| LOC110507053 | rnf26 | coding | downstream | 647229 | 5505817 ~ 5511748 (+) |
| LOC110507391 | arcn1 | coding | downstream | 882674 | 5741262 ~ 5751139 (+) |
| G2043559 | NA | non-coding | upstream | 336976 | 4452950 ~ 4453198 (+) |
| G2043200 | NA | non-coding | upstream | 371943 | 4417994 ~ 4418231 (+) |
| G2043199 | NA | non-coding | upstream | 373346 | 4416499 ~ 4416828 (+) |
| G2043198 | NA | non-coding | upstream | 375425 | 4414473 ~ 4414749 (+) |
| G2043196 | NA | non-coding | upstream | 379950 | 4409990 ~ 4410224 (+) |
| G2043904 | NA | non-coding | downstream | 225044 | 5083632 ~ 5105824 (+) |
| G2043754 | NA | non-coding | downstream | 472545 | 5331133 ~ 5332221 (+) |
| G2043755 | NA | non-coding | downstream | 474655 | 5333243 ~ 5333478 (+) |
| G2044047 | NA | non-coding | downstream | 476729 | 5335317 ~ 5335626 (+) |
| LOC110507374 | spa17 | other | upstream | 97302 | 4685868 ~ 4692872 (+) |
| G2043193 | NA | other | upstream | 384048 | 4405458 ~ 4406126 (+) |
| G2040882 | NA | other | upstream | 1951247 | 2834096 ~ 2838927 (+) |
| LOC110507334 | LOC106612406 | other | upstream | 1974833 | 2813649 ~ 2815411 (+) |
| G2040863 | NA | other | upstream | 1988173 | 2799781 ~ 2802001 (+) |
| LOC110507397 | sfr16 | other | downstream | 1033259 | 5874691 ~ 5896127 (+) |
| LOC110507398 | znf296 | other | downstream | 1038929 | 5897208 ~ 5910058 (+) |
| G2045522 | NA | other | downstream | 1636245 | 6494833 ~ 6495134 (+) |
| G2045655 | NA | other | downstream | 1833956 | 6692544 ~ 6693044 (+) |
| G2045665 | NA | other | downstream | 1861176 | 6719764 ~ 6720692 (+) |
