ccdc153 (ccdc153)


Basic Information

Item Value
gene id ccdc153
gene name ccdc153
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5346328 ~ 5350245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965170.1
TATAGGCTATTAACTTGAAAAACTTCACCGTGCACGTTTTTGGAGCGTTCAACCTACAAAGCATTCCTGAATAAGGATTCCATGAATGTGACTCGTTGTCACCACAGCAACAACGGGACGCCAAGCAATGCGCAATTGCTTGTAGGCATATCGATTGTAGAGGAATTTTGCAGCAGAATAATGCctccaaagaagaagaaagggaaaagtaatatcaataaaaaaaataagaaagctAATGAGGGGGGAATTGAATTGGAGGAGAAGTACAGGCGGAGTGCATTGGATGTAACAGTTCTGAGGGACCATCTTGCTCTGCGAGGGGATGTGGCACAGCAGGCCCAGTCCATCAGTCATGACCTGAGATCTCGTATGCGGGACATGGAGCAGGAGCTCCACCATGAGAGACTGGACCGCAAAGACGTCAATGCAGCTCAGTGTCAGGAGGAGTTGAGGGCAGAAAGGAAAGCGCATGAGCAGCTGCAGCAGGAGAAGGATACCACAATAGCTGACTTACAAAACAAACTGGACAACATGGAGACCAACTATGAGAAGATTCTGCATGACACTTTGGACAGTTTGACCTCCCAACTGGCTGAGGCTCGACTGCGGTGGGAGCAGGAGAGTACTGTTGTCCATCAGGAATACAAAGAGCTGCTCTCTGACTTTGGCTTGAACTCACTGGACATCTGAAAGGCTCTTATTATGTAaccagggcccgtattcataaAATGTCTCAGGGTAAGAGTGCAGATCTCAGATCCATGTCTCCCCCCTTTCACCCCCCTGTCCATGTACATTTCATTATAATCTAAAAGGCTAAatggatcctagatcagcactcccactCTGATGATCTTTATGAATACTGGCCCTTATCACCACCACATTGTTTCATTGCTACTATAAGACCAGGCACACCAGGGGCTCGTATGTGTCAATAACATTACATGGACAGTGAGGACCTGATCtacatcagcactcctactctgacacTTGACACACATTATGGTAAAGTAAATAGATCGATTCCATGTGGATTTGAAGTCATTCATAACGAGAAGGAAAACTTAATGACAATAATGTAAGAACCAGTGTTTGATTCATTTGGTTACTGTGTCTTTCATGATGTATAATACTTCTTAAAAACATGCAGTTGTTTGATTTTCTTCCTATAGTTATTGTGGTATTGATGGTCATTCACAAATATTACGTTTTTGAGTCTTTGGGGTGACACAAATTGTCATTTGAAATGATCCACAGTAACTTACATACTAACTCTCAAACTAATGGCTATTGTTTGAGAGTGAAACAACTACTGTGCATTTATTGGCTTTTTTACTCTTACAACACATATTTATGGAAGTAAGGAAGTTAGCTTATGTATCGTACATTTCCACCAGGGTGCGTCTTCCATATTTCCTGATAGTCATTCAGGTATTTTATTGAACACTATCTTTTCATGTCCACTAGATGTGGCTGATCATGGCACaacactagtctcaacgtcaacagtgaagaggcgactccgg
>XM_036965169.1
TTGAAAAACTTCACCGTGCACGTTTTTGGAGCGTTCAACCTACAAAGCATTCCTGAATAAGGATTCCATGAATGTGACTCGTTGTCACCACAGCAACAACGGGACGCCAAGCAATGCGCAATTGCTTGTAGGCATATCGATTGTAGAGGAATTTTGCAGCAGAATAATGCctccaaagaagaagaaagggaaaagtaatatcaataaaaaaaataagaaagctAATGAGGGGGGAATTGAATTGGAGGAGAAGTACAGGCGGAGTGCATTGGATGTAACAGTTCTGAGGGACCATCTTGCTCTGCGAGGGGATGTGGCACAGCAGGCCCAGTCCATCAGTCATGACCTGAGATCTCGTATGCGGGACATGGAGCAGGAGCTCCACCATGAGAGACTGGACCGCAAAGACGTCAATGCAGATCTCACCCGTCAGCATAAGACCATGCAAACAGACATGACGGTCAAAGTGAAAAGGCTGGGGGGTGAGGCCATTTTGCTGCGAGAACAGCTTGCTCAGTGTCAGGAGGAGTTGAGGGCAGAAAGGAAAGCGCATGAGCAGCTGCAGCAGGAGAAGGATACCACAATAGCTGACTTACAAAACAAACTGGACAACATGGAGACCAACTATGAGAAGATTCTGCATGACACTTTGGACAGTTTGACCTCCCAACTGGCTGAGGCTCGACTGCGGTGGGAGCAGGAGAGTACTGTTGTCCATCAGGAATACAAAGAGCTGCTCTCTGACTTTGGCTTGAACTCACTGGACATCTGAAAGGCTCTTATTATGTAaccagggcccgtattcataaAATGTCTCAGGGTAAGAGTGCAGATCTCAGATCCATGTCTCCCCCCTTTCACCCCCCTGTCCATGTACATTTCATTATAATCTAAAAGGCTAAatggatcctagatcagcactcccactCTGATGATCTTTATGAATACTGGCCCTTATCACCACCACATTGTTTCATTGCTACTATAAGACCAGGCACACCAGGGGCTCGTATGTGTCAATAACATTACATGGACAGTGAGGACCTGATCtacatcagcactcctactctgacacTTGACACACATTATGGTAAAGTAAATAGATCGATTCCATGTGGATTTGAAGTCATTCATAACGAGAAGGAAAACTTAATGACAATAATGTAAGAACCAGTGTTTGATTCATTTGGTTACTGTGTCTTTCATGATGTATAATACTTCTTAAAAACATGCAGTTGTTTGATTTTCTTCCTATAGTTATTGTGGTATTGATGGTCATTCACAAATATTACGTTTTTGAGTCTTTGGGGTGACACAAATTGTCATTTGAAATGATCCACAGTAACTTACATACTAACTCTCAAACTAATGGCTATTGTTTGAGAGTGAAACAACTACTGTGCATTTATTGGCTTTTTTACTCTTACAACACATATTTATGGAAGTAAGGAAGTTAGCTTATGTATCGTACATTTCCACCAGGGTGCGTCTTCCATATTTCCTGATAGTCATTCAGGTATTTTATTGAACACTATCTTTTCATGTCCACTAGATGTGGCTGATCATGGCACaacactagtctcaacgtcaacagtgaagaggcgactccg

Function

symbol description
ccdc153 Orthologous to human CCDC153 (coiled-coil domain containing 153).

NR:

description
coiled-coil domain-containing protein 153

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965170.1 False 1532 mRNA 0.43 5 5346328 5350245
XM_036965169.1 True 1610 mRNA 0.43 6 5346329 5350231

Neighbor

gene id symbol gene type direction distance location
LOC110507371 NA coding downstream 719585 4573030 ~ 4626743 (-)
scn3b LOC106612464 coding downstream 773957 4550225 ~ 4572371 (-)
drd2a d2r2 coding downstream 840376 4472051 ~ 4505952 (-)
zgc:162608 LOC106612462 coding downstream 1047648 4291400 ~ 4298680 (-)
laynb layn coding downstream 1069896 4270462 ~ 4276432 (-)
LOC110507384 mcam coding upstream 92770 5443015 ~ 5490555 (-)
c1qtnf5 c1qtnf5 coding upstream 172635 5522880 ~ 5526800 (-)
kmt2a kmt2a coding upstream 181632 5531877 ~ 5586139 (-)
LOC110507388 ube4a coding upstream 241251 5591496 ~ 5613273 (-)
pdzd3a LOC106612428 coding upstream 268852 5619097 ~ 5634015 (-)
G2044635 NA non-coding downstream 185 5345868 ~ 5346143 (-)
G2044623 NA non-coding downstream 14155 5331383 ~ 5332173 (-)
G2044622 NA non-coding downstream 16795 5329049 ~ 5329533 (-)
G2044621 LOC107585599 non-coding downstream 18295 5327805 ~ 5328033 (-)
G2044617 NA non-coding downstream 22190 5323863 ~ 5324138 (-)
G2044886 NA non-coding upstream 128431 5478676 ~ 5481199 (-)
G2044904 NA non-coding upstream 167466 5517711 ~ 5517936 (-)
G2044914 NA non-coding upstream 201598 5551843 ~ 5552045 (-)
G2043518 NA other downstream 931905 4414065 ~ 4414423 (-)
G2043483 NA other downstream 966899 4378934 ~ 4379429 (-)
G2043460 NA other downstream 997919 4343599 ~ 4348409 (-)
LOC110507356 LOC106580682 other downstream 1804575 3539029 ~ 3718487 (-)
G2042608 NA other downstream 1943331 3400579 ~ 3402997 (-)
G2045223 LOC106612485 other upstream 518330 5868575 ~ 5870139 (-)
LOC110507410 LOC106612495 other upstream 882370 6228113 ~ 6235871 (-)
LOC110507421 gemin7 other upstream 1139477 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 1152170 6501784 ~ 6512110 (-)

Expression


Co-expression Network