LOC110507053 (rnf26)


Basic Information

Item Value
gene id LOC110507053
gene name rnf26
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5505817 ~ 5511748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586933.2
ATGGGGGCTCCGGTTCAGGATGTAGACCCCGCTCCGCTCGATGATCCCTCCGCTTCAGTGGAACTGGACTGTGGATCGTCGcgggaggctccggaccgtggatcgtcaccGGAGGAACCgaaccgtggatcatcgccggggactccggaccaTAGATCGTCGCTGGAGGAACCGGACTGTGGATCGTCGacggaggctccggaccgtggatcgtcgccggaggctccggactgtgtaTCGTCGCCAGGGACACCGGACCGTAGATCATCGCTGGGGACTCCAgaccTCCATTCAGTGATACGTCTCCTGGCGGCATGTATCACCTTTGTGAATAACCTACCCATGTTACTGACCAACTCAATTGTGAAGTGCTGGAACTTCACTGTGTTCTGCATGGTCACCATGATGGACAGCGTAACACTTTTGGCCCAGGGCACAGTCAACATGTTGGGGCGCTGGCTGCACCTCTTGGGAGGTGTTCTGGAGAGTTTCAAAATGGTGTGCTACTTGTCCTCACATGTTCTCCTGCGTGTCAGGGATCTGTTCCACCGTGGGCTGCTGTGTGGCCACTGCTTGCTGCAACAGGTGTGGGAGGGCTGTGGCATTGCGGTCAGCCTGGTGTTCTACCTGGTCAACACGGTGGTCAACCTGCTGCTCATCGGGACACAGAACGTCTACTCAGTTGTAGTCAGCATGTGGGAGGCAGTTTCCTGCCCCCTGCAGAAGGCTGTGGAGCTCACCCTCACACTCTTCACCTTTCTGTACAGCAGCCTGGTTGGCACCTCAGTCGTTCTCTGGACTCCCATCAGGCTGGCCCTGGAGTTCCTGGGCTCGCTCGGACACATCTTCGTCAGCGTCTTCCTCCTGAACATCTATGGCCTCATTCTCACAGCGACCATTGTTGTCACCGCCACAGTCTATATGAACCCTGAGCTGACCAGTCTTGGAGCCCGGCGCGCCTTCGGTTTTGTCAACTCTGTCCCCACCTTGCATCTCATACAGAGGGCGCTCCATCGCCTCTACGTGCTGGAGAGGGGCGTGTGGCAGAGGCTTCAGCGGCAGGCCAGCCGCCTACACCAAACGATAACACCAGTCTACAGGAACATCAGAGTGAGGGGTGACGGCCACGCCAGGCAACCTGAGCCCAGTGACAGAGAACAGGCGGCTCTTACGGGCAGTAGGGAAGGAGACGCAGCACCACCCGCTGAACATGCTGCCCGGCCACGCCAGCTAATGGATGACCTGTGGGACCTAGCGTACCCCAGCTCCAGCAGCACAGACAGGCCTTTACAGAAACTCTCATCGGGGGAGGGGTGCTCCAGCTCCAATGGTCCCCCGGCCGACAGCCTACTGACTCTGCTCAAGGAGCATGAGGAGAGGAAGAAGTGCGTCATCTGCCAGGACAGCACCAAGACAGTGGTGCTGCTGCCCTGCCGCCACCTGTGTCTGTGTCGGGACTGTACTCACATACTGCTGCGCCAGCCCATCTACCAGCAGAACTGTCCGCTCTGCCGCCATATGATCCTTAATACCATGGATGTGTATCTCTGA

Function

symbol description
rnf26 Predicted to enable metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNF26 (ring finger protein 26).

NR:

description
RING finger protein 26-like

GO: NA

KEGG:

id description
K15693 RNF26; E3 ubiquitin-protein ligase RNF26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586933.2 True 1551 mRNA 0.59 2 5505817 5511748

Neighbor

gene id symbol gene type direction distance location
cbl cbl coding upstream 66753 5375556 ~ 5514824 (+)
LOC110507051 LOC106612471 coding upstream 174894 4879928 ~ 5330923 (+)
LOC118944797 NA coding upstream 194811 5310954 ~ 5311006 (+)
LOC110507382 NA coding upstream 647229 4790174 ~ 4858588 (+)
LOC110507378 tm136 coding upstream 716801 4773298 ~ 4789016 (+)
LOC110507391 arcn1 coding downstream 229514 5741262 ~ 5751139 (+)
LOC110507055 lxn coding downstream 244859 5756607 ~ 5764256 (+)
LOC110507392 itpkc coding downstream 257864 5769612 ~ 5794438 (+)
snrpa snrpa coding downstream 286865 5798613 ~ 5801513 (+)
LOC110507396 LOC106612485 coding downstream 310898 5822646 ~ 5870186 (+)
G2044641 NA non-coding upstream 59235 5443020 ~ 5446582 (+)
G2044047 NA non-coding upstream 170191 5335317 ~ 5335626 (+)
G2043755 NA non-coding upstream 172339 5333243 ~ 5333478 (+)
G2043754 NA non-coding upstream 173596 5331133 ~ 5332221 (+)
G2043904 NA non-coding upstream 399993 5083632 ~ 5105824 (+)
G2044731 NA non-coding downstream 3106 5514854 ~ 5515593 (+)
G2044733 NA non-coding downstream 4389 5516137 ~ 5516448 (+)
G2044740 c1qtnf5 non-coding downstream 11132 5522880 ~ 5524035 (+)
G2044730 NA non-coding downstream 20201 5531949 ~ 5534811 (+)
G2044749 NA non-coding downstream 36612 5548360 ~ 5548668 (+)
LOC110507374 spa17 other upstream 812945 4685868 ~ 4692872 (+)
G2043193 NA other upstream 1099691 4405458 ~ 4406126 (+)
G2040882 NA other upstream 2666890 2834096 ~ 2838927 (+)
LOC110507334 LOC106612406 other upstream 2690476 2813649 ~ 2815411 (+)
G2040863 NA other upstream 2703816 2799781 ~ 2802001 (+)
LOC110507397 sfr16 other downstream 380099 5874691 ~ 5896127 (+)
LOC110507398 znf296 other downstream 385769 5897208 ~ 5910058 (+)
G2045522 NA other downstream 983085 6494833 ~ 6495134 (+)
G2045655 NA other downstream 1180796 6692544 ~ 6693044 (+)
G2045665 NA other downstream 1208016 6719764 ~ 6720692 (+)

Expression


Co-expression Network