c1qtnf5 (c1qtnf5)


Basic Information

Item Value
gene id c1qtnf5
gene name c1qtnf5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5522880 ~ 5526800 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587346.2
TCCTTTTCCCCACTCCCTCGCTTTCCTGATTTCTCAACATCTCTCTTGTTCTGATCCTGATCTTATTGTTTGACTTATTGAAGACTTATTTTCCTCTTCATTATTTGTGCTGGGGAGACTTCAAATATTTCCCTCCTACTCTCACTAtattttcctctctgtctcccaccctccctctttcTAATTTGCTTTCATTGCCGTTTCCTTCCCAGGCTGAGAGTTCTCCTCTTTTCCCAGGCTCTTTGGCTGAAAGCAGCAAAGATAACTTTGACTGTTTTCACTTCAGCACAAGGCAAAGACGGCTGCTCCTAAGGACTTTTGGACGTTGACTGCATTGAAATGAAATCACTCCAGCTAtggcccctcctcctcctccccgttCTACTGGTCAACTTCTCCAACCAATTAGAAGACAACAAGATACCGCCCAGTCTGTGTACGGGACACCCAGGTATCCCAGGCACCCCTGGGTTGCACGGAGGTGCTGGCCAACCAGGAAGAGATGGGAGGGACGGGCGTGATTCTGCCcctggggagaagggagagaagggagtcGGGGGAGAGCCAGGTGACACAGGCTTTAGGGGCCTCACTGGAGACCAGGGGAACCCTGGAGATAAAGGAGACAGGGGGCAGTCGGGGGAGTGCGCCATTGCTCCCAAATCAGCCTTCAGCGCCAAGTTGTCCGAGGGCCGCACCAAGCCCGTGGCGGCGGAAGACGCTGTGCACTTTGACAAGGTAATACTCAACGAGCAGGGCGACTACGACATGGAAACAGGACGCTTCACCTGCAAAGTGCCCGGCGTCTACTACTTTGCGGTCCACGCCACCGTCTACCGGGCCAGCCTGCAGTTTGACCTGATGAAAAACGGTCACACGATGGCGTCGTATTTCCAGTTCTATGGGAACTGGCCCAAGCCAGCGTCTTTGTCCGGGGGCTCGCTGCTGCACCTCATCCCGGGCGACCAGGTGTGGGTACAGATGGCATTGGGAGAGTACAGTGGTTTCTACTCCAGCTCTAAGACTGACAGCACCTTCACTGGCTTCTTGGTGTACTCAGACTGGAAAAACTCTGCTGTCTTCGCCAAGGGCGAAGGGGTATAGACATTGGGGGGGACCAAGTTTAGTATGGGGGCTGGGGGTCCTGCCTCAGAAAATATTTCAACATTTTAAACAAATTTACTGCCATTCTACATGATTCGTGGCTTCTTTAGAAGGAAACTCTGGTCTTTGCATAAACACATTAAGCAGTAGACTATGGCACATACCATACTGATGAGTTGTGATGATGAATCAGGTGAACTGTCGTGCTTTCAGCTGTGCTTCGGGTTAGCTATTTGACTGCTGCTGTGCGATGGTGAATACACAGTTTTTGATCTACATGCATCATTGTTTTTTTGCCTTTACAAACAAGGACAGGGGTTTAAATGAGACATGTTGGCTCCTGCAGTTGGTAGGAATTAGCAACATAAGAAGGTTATATATTCAGTTTAGTGGTGGAGAGGTAAAGAGGATTCAAGAAGACATCATACAGGTATGTGAGCTGTTTAGGACTTCCAACTGTGACATCACTGACTGATGTCATGGTACTTAGACAGTTTTttgtggaagaaaaaaaaaagagttgtAAAGTATTCAAACGTAAGCCCTAAAATAGGCTTTTCACAATCTTTTAACGTATCTGTCTGTGCAGCCCTCAGTTATGTCACCAATAAAAATGTCAACTCTCA
>XM_021587347.2
CCTCCTTTTCCCCACTCCCTCGCTTTCCTGATTTCTCAACATCTCTCTTGTTCTGATCCTGATCTTATTGTTTGACTTATTGAAGACTTATTTTCCTCTTCATTATTTGTGCTGGGGAGACTTCAAATATTTCCCTCCTACTCTCACTAtattttcctctctgtctcccaccctccctctttcTAATTTGCTTTCATTGCCGTTTCCTTCCCAGGCTGAGAGTTCTCCTCTTTTCCCAGGCTCTTTGGCTGAAAGCAGCAAAGATAACTTTGACTGTTTTCACTTCAGCACAAGGCAAAGACGGCTGCTCCTAAGGACTTTTGGACGTTGACTGTAGCATTGAAATGAAATCACTCCAGCTAtggcccctcctcctcctccccgttCTACTGGTCAACTTCTCCAACCAATTAGAAGACAACAAGATACCGCCCAGTCTGTGTACGGGACACCCAGGTATCCCAGGCACCCCTGGGTTGCACGGAGGTGCTGGCCAACCAGGAAGAGATGGGAGGGACGGGCGTGATTCTGCCcctggggagaagggagagaagggagtcGGGGGAGAGCCAGGTGACACAGGCTTTAGGGGCCTCACTGGAGACCAGGGGAACCCTGGAGATAAAGGAGACAGGGGGCAGTCGGGGGAGTGCGCCATTGCTCCCAAATCAGCCTTCAGCGCCAAGTTGTCCGAGGGCCGCACCAAGCCCGTGGCGGCGGAAGACGCTGTGCACTTTGACAAGGTAATACTCAACGAGCAGGGCGACTACGACATGGAAACAGGACGCTTCACCTGCAAAGTGCCCGGCGTCTACTACTTTGCGGTCCACGCCACCGTCTACCGGGCCAGCCTGCAGTTTGACCTGATGAAAAACGGTCACACGATGGCGTCGTATTTCCAGTTCTATGGGAACTGGCCCAAGCCAGCGTCTTTGTCCGGGGGCTCGCTGCTGCACCTCATCCCGGGCGACCAGGTGTGGGTACAGATGGCATTGGGAGAGTACAGTGGTTTCTACTCCAGCTCTAAGACTGACAGCACCTTCACTGGCTTCTTGGTGTACTCAGACTGGAAAAACTCTGCTGTCTTCGCCAAGGGCGAAGGGGTATAGACATTGGGGGGGACCAAGTTTAGTATGGGGGCTGGGGGTCCTGCCTCAGAAAATATTTCAACATTTTAAACAAATTTACTGCCATTCTACATGATTCGTGGCTTCTTTAGAAGGAAACTCTGGTCTTTGCATAAACACATTAAGCAGTAGACTATGGCACATACCATACTGATGAGTTGTGATGATGAATCAGGTGAACTGTCGTGCTTTCAGCTGTGCTTCGGGTTAGCTATTTGACTGCTGCTGTGCGATGGTGAATACACAGTTTTTGATCTACATGCATCATTGTTTTTTTGCCTTTACAAACAAGGACAGGGGTTTAAATGAGACATGTTGGCTCCTGCAGTTGGTAGGAATTAGCAACATAAGAAGGTTATATATTCAGTTTAGTGGTGGAGAGGTAAAGAGGATTCAAGAAGACATCATACAGGTATGTGAGCTGTTTAGGACTTCCAACTGTGACATCACTGACTGATGTCATGGTACTTAGACAGTTTTttgtggaagaaaaaaaaaagagttgtAAAGTATTCAAACGTAAGCCCTAAAATAGGCTTTTCACAATCTTTTAACGTATCTGTCTGTGCAGCCCTCAGTTATGTCACCAATAAAAATGTCAACTCTCA
>XM_021587349.2
CACCTCCTTTTCCCCACTCCCTCGCTTTCCTGATTTCTCAACATCTCTCTTGTTCTGATCCTGATCTTATTGTTTGACTTATTGAAGACTTATTTTCCTCTTCATTATTTGTGCTGGGGAGACTTCAAATATTTCCCTCCTACTCTCACTAtattttcctctctgtctcccaccctccctctttcTAATTTGCTTTCATTGCCGTTTCCTTCCCAGGCTGAGAGTTCTCCTCTTTTCCCAGGCTCTTTGGCTGAAAGCAGCAAAGATAACTTTGACTGTTTTCACTTCAGCACAAGGCAAAGACGGCTGCTCCTAAGGACTTTTGGACGTTGACTGAATGCTGACACAGCTTTTGGCTAGTTTCTCCACAGGCCAGCCCTCTCTGCTCTGCACGGGTCTTTAAATGCTGCCATAAAGAATACAGCAGCTGAGGCCGAAATATATACCACTGACTCACGAAGGTGGCAGTGAGATGAAAATAACCTGGAAGACAGTGCATTGAGGATTTCATCTTTTATCAAAGTAGCATTGAAATGAAATCACTCCAGCTAtggcccctcctcctcctccccgttCTACTGGTCAACTTCTCCAACCAATTAGAAGACAACAAGATACCGCCCAGTCTGTGTACGGGACACCCAGGTATCCCAGGCACCCCTGGGTTGCACGGAGGTGCTGGCCAACCAGGAAGAGATGGGAGGGACGGGCGTGATTCTGCCcctggggagaagggagagaagggagtcGGGGGAGAGCCAGGTGACACAGGCTTTAGGGGCCTCACTGGAGACCAGGGGAACCCTGGAGATAAAGGAGACAGGGGGCAGTCGGGGGAGTGCGCCATTGCTCCCAAATCAGCCTTCAGCGCCAAGTTGTCCGAGGGCCGCACCAAGCCCGTGGCGGCGGAAGACGCTGTGCACTTTGACAAGGTAATACTCAACGAGCAGGGCGACTACGACATGGAAACAGGACGCTTCACCTGCAAAGTGCCCGGCGTCTACTACTTTGCGGTCCACGCCACCGTCTACCGGGCCAGCCTGCAGTTTGACCTGATGAAAAACGGTCACACGATGGCGTCGTATTTCCAGTTCTATGGGAACTGGCCCAAGCCAGCGTCTTTGTCCGGGGGCTCGCTGCTGCACCTCATCCCGGGCGACCAGGTGTGGGTACAGATGGCATTGGGAGAGTACAGTGGTTTCTACTCCAGCTCTAAGACTGACAGCACCTTCACTGGCTTCTTGGTGTACTCAGACTGGAAAAACTCTGCTGTCTTCGCCAAGGGCGAAGGGGTATAGACATTGGGGGGGACCAAGTTTAGTATGGGGGCTGGGGGTCCTGCCTCAGAAAATATTTCAACATTTTAAACAAATTTACTGCCATTCTACATGATTCGTGGCTTCTTTAGAAGGAAACTCTGGTCTTTGCATAAACACATTAAGCAGTAGACTATGGCACATACCATACTGATGAGTTGTGATGATGAATCAGGTGAACTGTCGTGCTTTCAGCTGTGCTTCGGGTTAGCTATTTGACTGCTGCTGTGCGATGGTGAATACACAGTTTTTGATCTACATGCATCATTGTTTTTTTGCCTTTACAAACAAGGACAGGGGTTTAAATGAGACATGTTGGCTCCTGCAGTTGGTAGGAATTAGCAACATAAGAAGGTTATATATTCAGTTTAGTGGTGGAGAGGTAAAGAGGATTCAAGAAGACATCATACAGGTATGTGAGCTGTTTAGGACTTCCAACTGTGACATCACTGACTGATGTCATGGTACTTAGACAGTTTTttgtggaagaaaaaaaaaagagttgtAAAGTATTCAAACGTAAGCCCTAAAATAGGCTTTTCACAATCTTTTAACGTATCTGTCTGTGCAGCCCTCAGTTATGTCACCAATAAAAATGTCAACTCTCA
>XM_021587350.2
CACCTCCTTTTCCCCACTCCCTCGCTTTCCTGATTTCTCAACATCTCTCTTGTTCTGATCCTGATCTTATTGTTTGACTTATTGAAGACTTATTTTCCTCTTCATTATTTGTGCTGGGGAGACTTCAAATATTTCCCTCCTACTCTCACTAtattttcctctctgtctcccaccctccctctttcTAATTTGCTTTCATTGCCGTTTCCTTCCCAGGCTGAGAGTTCTCCTCTTTTCCCAGGCTCTTTGGCTGAAAGCAGCAAAGATAACTTTGACTGTTTTCACTTCAGCACAAGGCAAAGACGGCTGCTCCTAAGGACTTTTGGACGTTGACTGAATGCTGACACAGCTTTTGGCTAGTTTCTCCACAGGCCAGCCCTCTCTGCTCTGCACGGGTCTTTAAATGCTGCCATAAAGAATACAGCAGCTGAGGCCGAAATATATACCACTGACTCACGAAGGTGGCAGTGAGATGAAAATAACCTGGAAGACAGTGCATTGAGGATTTCATCTTTTATCAAAGCATTGAAATGAAATCACTCCAGCTAtggcccctcctcctcctccccgttCTACTGGTCAACTTCTCCAACCAATTAGAAGACAACAAGATACCGCCCAGTCTGTGTACGGGACACCCAGGTATCCCAGGCACCCCTGGGTTGCACGGAGGTGCTGGCCAACCAGGAAGAGATGGGAGGGACGGGCGTGATTCTGCCcctggggagaagggagagaagggagtcGGGGGAGAGCCAGGTGACACAGGCTTTAGGGGCCTCACTGGAGACCAGGGGAACCCTGGAGATAAAGGAGACAGGGGGCAGTCGGGGGAGTGCGCCATTGCTCCCAAATCAGCCTTCAGCGCCAAGTTGTCCGAGGGCCGCACCAAGCCCGTGGCGGCGGAAGACGCTGTGCACTTTGACAAGGTAATACTCAACGAGCAGGGCGACTACGACATGGAAACAGGACGCTTCACCTGCAAAGTGCCCGGCGTCTACTACTTTGCGGTCCACGCCACCGTCTACCGGGCCAGCCTGCAGTTTGACCTGATGAAAAACGGTCACACGATGGCGTCGTATTTCCAGTTCTATGGGAACTGGCCCAAGCCAGCGTCTTTGTCCGGGGGCTCGCTGCTGCACCTCATCCCGGGCGACCAGGTGTGGGTACAGATGGCATTGGGAGAGTACAGTGGTTTCTACTCCAGCTCTAAGACTGACAGCACCTTCACTGGCTTCTTGGTGTACTCAGACTGGAAAAACTCTGCTGTCTTCGCCAAGGGCGAAGGGGTATAGACATTGGGGGGGACCAAGTTTAGTATGGGGGCTGGGGGTCCTGCCTCAGAAAATATTTCAACATTTTAAACAAATTTACTGCCATTCTACATGATTCGTGGCTTCTTTAGAAGGAAACTCTGGTCTTTGCATAAACACATTAAGCAGTAGACTATGGCACATACCATACTGATGAGTTGTGATGATGAATCAGGTGAACTGTCGTGCTTTCAGCTGTGCTTCGGGTTAGCTATTTGACTGCTGCTGTGCGATGGTGAATACACAGTTTTTGATCTACATGCATCATTGTTTTTTTGCCTTTACAAACAAGGACAGGGGTTTAAATGAGACATGTTGGCTCCTGCAGTTGGTAGGAATTAGCAACATAAGAAGGTTATATATTCAGTTTAGTGGTGGAGAGGTAAAGAGGATTCAAGAAGACATCATACAGGTATGTGAGCTGTTTAGGACTTCCAACTGTGACATCACTGACTGATGTCATGGTACTTAGACAGTTTTttgtggaagaaaaaaaaaagagttgtAAAGTATTCAAACGTAAGCCCTAAAATAGGCTTTTCACAATCTTTTAACGTATCTGTCTGTGCAGCCCTCAGTTATGTCACCAATAAAAATGTCAACTCTCA
>XM_021587351.2
GCACCTCCTTTTCCCCACTCCCTCGCTTTCCTGATTTCTCAACATCTCTCTTGTTCTGATCCTGATCTTATTGTTTGACTTATTGAAGACTTATTTTCCTCTTCATTATTTGTGCTGGGGAGACTTCAAATATTTCCCTCCTACTCTCACTAtattttcctctctgtctcccaccctccctctttcTAATTTGCTTTCATTGCCGTTTCCTTCCCAGGCTGAGAGTTCTCCTCTTTTCCCAGGCTCTTTGGCTGAAAGCAGCAAAGATAACTTTGACTGTTTTCACTTCAGCACAAGGCAAAGACGGCTGCTCCTAAGGACTTTTGGACGTTGACTGAGAATGTTTCTCCTCTACATAGTAGCATTGAAATGAAATCACTCCAGCTAtggcccctcctcctcctccccgttCTACTGGTCAACTTCTCCAACCAATTAGAAGACAACAAGATACCGCCCAGTCTGTGTACGGGACACCCAGGTATCCCAGGCACCCCTGGGTTGCACGGAGGTGCTGGCCAACCAGGAAGAGATGGGAGGGACGGGCGTGATTCTGCCcctggggagaagggagagaagggagtcGGGGGAGAGCCAGGTGACACAGGCTTTAGGGGCCTCACTGGAGACCAGGGGAACCCTGGAGATAAAGGAGACAGGGGGCAGTCGGGGGAGTGCGCCATTGCTCCCAAATCAGCCTTCAGCGCCAAGTTGTCCGAGGGCCGCACCAAGCCCGTGGCGGCGGAAGACGCTGTGCACTTTGACAAGGTAATACTCAACGAGCAGGGCGACTACGACATGGAAACAGGACGCTTCACCTGCAAAGTGCCCGGCGTCTACTACTTTGCGGTCCACGCCACCGTCTACCGGGCCAGCCTGCAGTTTGACCTGATGAAAAACGGTCACACGATGGCGTCGTATTTCCAGTTCTATGGGAACTGGCCCAAGCCAGCGTCTTTGTCCGGGGGCTCGCTGCTGCACCTCATCCCGGGCGACCAGGTGTGGGTACAGATGGCATTGGGAGAGTACAGTGGTTTCTACTCCAGCTCTAAGACTGACAGCACCTTCACTGGCTTCTTGGTGTACTCAGACTGGAAAAACTCTGCTGTCTTCGCCAAGGGCGAAGGGGTATAGACATTGGGGGGGACCAAGTTTAGTATGGGGGCTGGGGGTCCTGCCTCAGAAAATATTTCAACATTTTAAACAAATTTACTGCCATTCTACATGATTCGTGGCTTCTTTAGAAGGAAACTCTGGTCTTTGCATAAACACATTAAGCAGTAGACTATGGCACATACCATACTGATGAGTTGTGATGATGAATCAGGTGAACTGTCGTGCTTTCAGCTGTGCTTCGGGTTAGCTATTTGACTGCTGCTGTGCGATGGTGAATACACAGTTTTTGATCTACATGCATCATTGTTTTTTTGCCTTTACAAACAAGGACAGGGGTTTAAATGAGACATGTTGGCTCCTGCAGTTGGTAGGAATTAGCAACATAAGAAGGTTATATATTCAGTTTAGTGGTGGAGAGGTAAAGAGGATTCAAGAAGACATCATACAGGTATGTGAGCTGTTTAGGACTTCCAACTGTGACATCACTGACTGATGTCATGGTACTTAGACAGTTTTttgtggaagaaaaaaaaaagagttgtAAAGTATTCAAACGTAAGCCCTAAAATAGGCTTTTCACAATCTTTTAACGTATCTGTCTGTGCAGCCCTCAGTTATGTCACCAATAAAAATGTCAACTCTCA

Function

symbol description
c1qtnf5 Predicted to be located in extracellular region. Is expressed in eye. Human ortholog(s) of this gene implicated in isolated microphthalmia 5; late-onset retinal degeneration; microphthalmia; nanophthalmos; and retinitis pigmentosa. Orthologous to several human genes including MFRP (membrane frizzled-related protein).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K24212 C1QTNF5; complement C1q and tumor necrosis factor-related protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587346.2 False 1730 mRNA 0.49 3 5522880 5526795
XM_021587347.2 False 1735 mRNA 0.49 3 5522880 5526797
XM_021587349.2 False 1924 mRNA 0.48 4 5522880 5526799
XM_021587350.2 False 1921 mRNA 0.48 4 5522880 5526799
XM_021587351.2 True 1760 mRNA 0.49 3 5522880 5526800

Neighbor

gene id symbol gene type direction distance location
LOC110507384 mcam coding downstream 32325 5443015 ~ 5490555 (-)
ccdc153 ccdc153 coding downstream 172635 5346328 ~ 5350245 (-)
LOC110507371 NA coding downstream 896137 4573030 ~ 4626743 (-)
scn3b LOC106612464 coding downstream 950509 4550225 ~ 4572371 (-)
drd2a d2r2 coding downstream 1016928 4472051 ~ 4505952 (-)
kmt2a kmt2a coding upstream 5077 5531877 ~ 5586139 (-)
LOC110507388 ube4a coding upstream 64696 5591496 ~ 5613273 (-)
pdzd3a LOC106612428 coding upstream 92297 5619097 ~ 5634015 (-)
LOC110507260 nlrx1 coding upstream 108680 5635480 ~ 5636898 (-)
LOC110507389 LOC105011778 coding upstream 152926 5679726 ~ 5710089 (-)
G2044904 NA non-coding downstream 4944 5517711 ~ 5517936 (-)
G2044886 NA non-coding downstream 41681 5478676 ~ 5481199 (-)
G2044635 NA non-coding downstream 176737 5345868 ~ 5346143 (-)
G2044623 NA non-coding downstream 190707 5331383 ~ 5332173 (-)
G2044914 NA non-coding upstream 25043 5551843 ~ 5552045 (-)
G2044915 NA non-coding upstream 25351 5552151 ~ 5552425 (-)
G2044928 NA non-coding upstream 89476 5616276 ~ 5616486 (-)
G2043518 NA other downstream 1108457 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1143451 4378934 ~ 4379429 (-)
G2043460 NA other downstream 1174471 4343599 ~ 4348409 (-)
LOC110507356 LOC106580682 other downstream 1981127 3539029 ~ 3718487 (-)
G2042608 NA other downstream 2119883 3400579 ~ 3402997 (-)
G2045223 LOC106612485 other upstream 341775 5868575 ~ 5870139 (-)
LOC110507410 LOC106612495 other upstream 705815 6228113 ~ 6235871 (-)
LOC110507421 gemin7 other upstream 962922 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 975615 6501784 ~ 6512110 (-)

Expression


Co-expression Network