pdzd3a (LOC106612428)


Basic Information

Item Value
gene id pdzd3a
gene name LOC106612428
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5619097 ~ 5634015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964873.1
TGGTGGAGGAAGAAAGAGTTACCGTCTCAAATGCTGACATACAGAGGAATCTTAACGTCACAATCTGCTGTGTACCTTGCACCTCCACACAACCTCAGGCAGCCAGGAGGACGTCCAGACACAAGGACAGACAGCAGCCACGAGGTGCACCGCGGcctaattactttctgaaggcaccggaTTTCATTTGGAGATGAGTAACCTGGATGTTTGGACCAAGGACACACAGCCACAGGGAGAAGGTCATTCCTGGAATCATTACTGCAGAGAAAACAAACTTGAGGGATTTTTCTTTTTTCTGTCAGTCTAGGTCTTGAGGATGCAATGGAATTTCCAAGATTCACCTTCAATCCGAAAGAGGGGATCGACAATCCAGCCTTGATCATCTCAGACGACCCGGAGCCAGACCCCAGTCCGGTACCCCGCCTGTGCCAGATAAAGTGCAAAGAGGGCCAGAGTTTTGGCTTCCATCTGCGAATGGAGAGGAGCTGCCGGGGCTATGTTGTCCGCCAGGTGGATCCGTGGAGTCCTGCAGCGCTCAGTGGGCTCAGGGACGGGGACCGTGTGCTGGAGGTCAATGAGGAATTTGTCGACAACATGGAGTTCCCGAGGGTGGTGCAGAGAATCCAGGCATGTGGGTTGCATCTGTTCCTGCTGGTTCTGAAGGGGGAGGAGTATAAGGAGGCGCTGGCCCAGGGACTGGACATCCAGGCTCTGACCAGGGCTTACCGAGGGGAGACATGTTCCCggcccaggctgtgtcacatcacCAGAGACCCTGTCTTAGGTCTGGGAATCAGCATCATCCCCATTGAAGGTCAGAAGGGTCAATACATGTTGAGCACAGTAAGTGAGGGTCCTGCAAAGAGGGCAGGGGTGCGTAGCGGAGATAGACTGGTGTGGATCAACGGTGCCATGGTATCAACGCTCACCCATTCAGCTATCAGTAAAATGGTGAAGAAATGTAGCGTCCATGTGACCGTCCTCGTCATCGACAGAGAAAGTGAAGCGAGCTACGTCCGACGGAAACTTCCCATCTTGCCGATCATGGCCGGCTCTCACAACCTGCCACACAGACCCACAACGATGCATCTGGTCCAGGGGTCAGATGGATATGGCTTCTTATTACGACAAGAGAGGTTGACATCAGGGGGGCCTATTGCTCACTTACTCCGTGAGGTGGATGTGGGGAGTCCAGCAGAAGAGGCTGGCATGCAGGATGGAGACTTGCTGCTGGCGGTCAATGGGCAGTCTTCGGAGTCCATGGAGCATGAGGATATTGTCAGGACAGTGAGGAAGAGTGGCAACCGGGTTAGCCTCACCACCATGCCCATACACGGAAGAGACTTTTACACGCAGTTGGGTCTATCTCCCCTGCTATTCCATGAGGACAGTCTGCCAGAAGGGGAAGGGATGAGGAAGACACGGTCCCCTTGCACTGAGATTCAGGATGGGCTGAGTAAAAACGAGCATGGCTCACTTCCTTGTCCAAGACTCTGTGTCCTCGAGAGAGAAGAATCAGGCTTTGGGTTTAATCTGGGCTGTGTTCAACATGAGCCAGGAACTTTCATAGGCCAGGTGATGGTAAAGGGCTCAGGACATAGGGCTGGGCTGTGGGAAGGGGATGTCGTTGTGGAGGTAAATGGCCAGAATGTAGAGAATGAGTACTTTGAGGACGTCGTGATGCTGATAAAGAAGTGCGAGTCGTCTTTGAAATTACTGGTTGTGGAGAGGCCAGGGTATGAGAGACTCAAACATAATGGGCTTCCAATCACTCCTGGGGTCATACTCCACAGCACTCAGGTTTTAGAGAAAACGAATGATGCTTTCTTGTGATGGAATGCTGAGAAGTGACCCAAGTCGTTATGAAGACAACATTAGGCATCTCACCTAACAGAGGATCTGGCACTGGCACAGCATCAACAACAAACAGCTGCAGTCACTCAGTCATGTCCCAATGATAACACAGTGCAGGACGAAATCAGTGAAGCTATTCCCTCTACTTCTAAATGCAACCTGAAAGAGAAGGACTGAAATAGAAGATTGGCCTGCGCTGtgtcctaaataccatcctattccctacatagtgcactacttttgaccagggccctatggggggAGGAAAGGGTGCCATTGGGGGCACCCTTCGCTCCACATCTCCCAATCTCACATGTCCTCTTTGTCAGGACTAGAGATATGCTATGACCTGCTTCTTGCAATGGAGGATTTGCAGAGTAGATTGCACACTGTTTCAATGATTAATATCTCATGTGTATATGATGGGATACTGAAGTTCAGGTTTATTCTATGGTGAAATCAGgataaacaaaataaaatggGAAAAACATCAGTCAGGCTCAGTTGAGAATCTATGATCGTTATTGTATGCGATGATTCAAGGAGGTGCACAAAGTTTAATGCATAAAACCAGTTCAATCTACAGTATATAGCTATGCAAGTATAGACAAAATGATGTATTGTTTATTTTGAGTATTTACATTTTTCTGCTTGTACTGTGTTGATCCTTGTTTGTGTCATCAAACAACACAATCTTATAAAATGTCCATTACAAGCCGAATCCTGATAGGTAAAGGTGGAGGGAGATTCAGTGAGTATCTACAGTGCACACACAAGGCCTACTTCAGCCTTTGCAGAATTTCATATTAAAGCAAATACCTAACATGGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964873.1 True 2686 mRNA 0.49 11 5619097 5634015

Neighbor

gene id symbol gene type direction distance location
LOC110507388 ube4a coding downstream 5824 5591496 ~ 5613273 (-)
kmt2a kmt2a coding downstream 32958 5531877 ~ 5586139 (-)
c1qtnf5 c1qtnf5 coding downstream 92297 5522880 ~ 5526800 (-)
LOC110507384 mcam coding downstream 128542 5443015 ~ 5490555 (-)
ccdc153 ccdc153 coding downstream 268852 5346328 ~ 5350245 (-)
LOC110507260 nlrx1 coding upstream 1465 5635480 ~ 5636898 (-)
LOC110507389 LOC105011778 coding upstream 45711 5679726 ~ 5710089 (-)
LOC110507390 LOC106612480 coding upstream 86375 5720390 ~ 5734365 (-)
LOC118944669 gfm1 coding upstream 125596 5759611 ~ 5766832 (-)
c27h19orf54 clg01h19orf54 coding upstream 161120 5795135 ~ 5798492 (-)
G2044930 NA non-coding downstream 1084 5617761 ~ 5618013 (-)
G2044928 NA non-coding downstream 2611 5616276 ~ 5616486 (-)
G2044915 NA non-coding downstream 66672 5552151 ~ 5552425 (-)
G2044949 NA non-coding upstream 2172 5636187 ~ 5636404 (-)
G2044951 NA non-coding upstream 3059 5637074 ~ 5637307 (-)
G2045021 NA non-coding upstream 12465 5646480 ~ 5646790 (-)
G2045023 NA non-coding upstream 17192 5651207 ~ 5651593 (-)
G2045088 NA non-coding upstream 118533 5752548 ~ 5752780 (-)
G2043518 NA other downstream 1204674 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1239668 4378934 ~ 4379429 (-)
G2043460 NA other downstream 1270688 4343599 ~ 4348409 (-)
LOC110507356 LOC106580682 other downstream 2077344 3539029 ~ 3718487 (-)
G2045223 LOC106612485 other upstream 234560 5868575 ~ 5870139 (-)
LOC110507410 LOC106612495 other upstream 598600 6228113 ~ 6235871 (-)
LOC110507421 gemin7 other upstream 855707 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 868400 6501784 ~ 6512110 (-)
LOC110507058 egln2 other upstream 1358368 6992367 ~ 7028249 (-)

Expression


Co-expression Network