LOC110507389 (LOC105011778)


Basic Information

Item Value
gene id LOC110507389
gene name LOC105011778
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5679726 ~ 5710089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587361.2
GGAACGCCTTAGCGACACAGGCAGAGAGCGCTGCATGCTAGAAGCTGGCAATACCGCCGACCGTGTAGCCTAGCAGCCTATGTTGCGGTACGCAGTGTGAAGATAGGCTGAATACCGCCAGAAAAAGCAAACTTATTGGGAAGCCGCGAATGTAAGGACAGATCTGCCAGTTCTAGTGCACCTAAGGATTTAGAAGAAGAGAGCGAACTGCCACCTTCACATCCTAATCAGGAACAGAATACATTCCTCTTATCCTGAGTTAACTTCAGTGCCTCAAACACACCCCTACACCCCCGTTGCAGAACGGTGGTATGGCTGATAGTGGAACGGCCGTCAAGCCTCCTGAACCTGAATCAGTCAGCATCCCGATGGAGGAAACCATCTGTAATGGGGGAACACAGGAGCCTTCTCTGTTGACAAATCTGAAGAAGGTGGAGAACCACATCACAGAGGCCCAGcgtttctcccatctccccaaGCGTTCAGCGGTGGACCTGGAATTCACAGAGCTCTCCTACACCATCCGGGAAGGGCCGtgctggagaaagagagGTTTTAAAGCCTTACTTAAGTGCCTGTCGGGGAGGTTCTGCAGCCGAGAGCTGATCGGAATCATGGGGCCCTCTGGGGCCGGCAAGTCCACTCTGATGAACATCCTGGCTGGCTACAGGGAAACAGGCATGAAAGGGAAGATCTTGGTGAATGGGAAACCCAGAGATCTCCGCACGTTTCGTAAGATGTCCTGTTATATCATGCAGGATGACATGCTGCTGCTGCACCTCACTGTCCGGGAAGCCATGATGGTTTCAGCCAACTTGAAGCTCAGTGAAACTATGGAAGTGAAAAAGGAACTGgtgaatgAGATCCTGACTGCTCTAGGGCTCCAGGAGTGTGCTCACACTCGCACCAGCTCCCTATCTGGGGGGCAGTGTAAACGGCTAGCAATCGCCCTTGAGCTAGTCAACAATCCCCCAGTCATGTTCTTTGATGAGCCAACCAGTGGACTGGACAGTGCCTCCTGTTACCAAGTGGTTTCTCTTATGAAATCTCTAGCCCTGGGGGGACGCACCATCATCTGCACCATCCACCAGCCCAGCGCCAAACTCTTTGAGATGTTTGATAAGCTGTACATCCTGAGTCAGGGCCAGTGCATATACAAAGGCACCGTCCCATACCTCATCCCCTATCTGAAGAACCTGGGGCTCCACTGCCCCACCTACCACAACCCGGCAGATTTCATCATTGAAGTGGCATCGGGGGAGTATGGAGACTGGAATCCTGTTCTGTTTGAGGCGGCCCAGGGTGGAATGTGTGccatagaggagaaggagaagtcATGTGACAAAAATGACACATCCGCTGTTTGTCCAACAAAGTGCCTCAAGGACTCAGGAGCCATTGAGAGCCATTCATTTGCTACAAGCACTTGGACACAGTTTTGCATTCTCTTCAATAGAACGTTGATGACAATATGTCGAGACCAGGTGTTGACACACCTAAGGCTGATGTCACACATCTCCATAGGAGTACTGATCGGCTTGCTCTACTTGAACATTGGCAACGACGCCAGCAAGGTCTTCAACAACACCggcttcctcttcttctccatgCTCTTCCTCATGTTCGGAGCTCTGATGCCCACCGTGCTCACATTTCCTCTGGAGATGTCCATTTTTCTGAGGGAACATCTAAACTATTGGTACAGCCTGAAGGCTTACTATCTGGCTAAGACTATGGCTGACATTCCATTCCAGGTCCTCTGCCCCGTCATGTACTGCAGTATAGTGTACTGGATGACAGATCAGCCTCCGGAGGCCACCCGCTTCCTGCTCTTCCTGGCCCTGTCGATCTGCACGGCCCTGGTAGCCCAGTCACTAGGGCTCCTGGTTGGTGCTGCCTCCACCAACCTCCAGGTGGCCACTTTTGTCGGCCCCGTCACTGCCATTCCTGTTCTTCTCTTCTCGGGCTTCTTTGTCAACTTTGACACCATTCCCAAGTACCTGCAATGGAGCTCCTATGTGTCCTATGTCAGGTACGGCTTTGAGGGGGTGATCCTGTCCATATACGGGATGAACCGTACCTATCTGTATTGTCCGGGGAAAGTGTGTAAATTCCAGAAGCCTGAGGAGGTCCTCCAACTGTTGGACGTGGAGGACGCCAAGCTCTACATGGACTTCATCGTTCTGGGGATCTTCTTCGTGATTCTCCGATTTGCCACCTACCTAGTGCTGCGGTACAAGGTCAAGTCAGAGCGATAGGTCTCACCCTCAACGCCCCCACCCTGTTCTGTGCAAAGCTATTGTACTGTAACACGTGGGTCCAACATCCAGTTTATATATCAATACCATAAATTGCTGCTTGGAAAAACTGGAATATATCACTTTTCTCTGTTGAAGTCATGATGGGACCAGAGAAGAGACATCTAACAAACATAAATGTTTTACCTCAGCAAGTAGGACTCCAAACATCTACAAGCATCTCTATGTACAGTAGGGTAGTACTGATGAGGGCACACAGACTATTCAAAGGACTGACCTGCAGGAACAACCAAAAACAGAGAATGTTTACACATCATTTAGCCTTGGCATAGCCAGAGGACATTCTACTGTTGCACTGGAGTGTGTCTGGTTTTAAAGACAGAATGAATCAGTATTGTAATCAAGTGTTGATTAAATTTCCTCAACTGAACGGAACTATTCACTTTTCTTCCGACTATCTTTCACTCTCATCTACGGTTTAGTTACAGTTTTGAGAACTAGAAAAATAAATATGACTTATTTTACCTGATAACAATGTATGAAAAACAAATCTGTACATTATTAGGCCATTCACTTGTTTTTATACTGTCTGAAAAATGTACCTTTCTCTAAAATGGATGATTCTCCTAATTATATAGTTTTTGGTTTCTCTAATCAACTCTAATCAATTAACTGTTCACATCCTacatgatgtactgtatgtatgcagCATTGTCAAGTTTAGTTTGGGTAATAGATTAAAGAGGTAATATTATCCTCAAACATATTCCTAAACCTGTCTCCACTGCCACAgtaatgtatatatttatagtataacCAGAGATGCAACATTCAAACTTTACTTCTACTTAACAATGGATgactttaaaggcccagtgcagtcaaaaccgttacttcctgtgttttatatataattCCACACTATgatgttggaataatactgtgaaattgtgaaaattatgatagtcctcttagtgtaagagctgtt

Function

NR:

description
ATP-binding cassette sub-family G member 4-like

GO: NA

KEGG:

id description
K05680 ABCG4; ATP-binding cassette, subfamily G (WHITE), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587361.2 True 3246 mRNA 0.47 17 5679726 5710089

Neighbor

gene id symbol gene type direction distance location
LOC110507260 nlrx1 coding downstream 42828 5635480 ~ 5636898 (-)
pdzd3a LOC106612428 coding downstream 45711 5619097 ~ 5634015 (-)
LOC110507388 ube4a coding downstream 66453 5591496 ~ 5613273 (-)
kmt2a kmt2a coding downstream 93587 5531877 ~ 5586139 (-)
c1qtnf5 c1qtnf5 coding downstream 152926 5522880 ~ 5526800 (-)
LOC110507390 LOC106612480 coding upstream 10301 5720390 ~ 5734365 (-)
LOC118944669 gfm1 coding upstream 49522 5759611 ~ 5766832 (-)
c27h19orf54 clg01h19orf54 coding upstream 85046 5795135 ~ 5798492 (-)
LOC110507406 map3k10 coding upstream 358335 6068424 ~ 6105009 (-)
LOC110507409 LOC106612510 coding upstream 512838 6222927 ~ 6224524 (-)
G2045023 NA non-coding downstream 28133 5651207 ~ 5651593 (-)
G2045021 NA non-coding downstream 32936 5646480 ~ 5646790 (-)
G2044951 NA non-coding downstream 42419 5637074 ~ 5637307 (-)
G2044949 NA non-coding downstream 43322 5636187 ~ 5636404 (-)
G2044930 NA non-coding downstream 61713 5617761 ~ 5618013 (-)
G2045088 NA non-coding upstream 42459 5752548 ~ 5752780 (-)
G2045090 NA non-coding upstream 43567 5753656 ~ 5754042 (-)
G2045187 NA non-coding upstream 92329 5802418 ~ 5802814 (-)
G2045188 NA non-coding upstream 92789 5802878 ~ 5803096 (-)
G2045191 NA non-coding upstream 96087 5806176 ~ 5806656 (-)
G2043518 NA other downstream 1265303 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1300297 4378934 ~ 4379429 (-)
G2043460 NA other downstream 1331317 4343599 ~ 4348409 (-)
LOC110507356 LOC106580682 other downstream 2137973 3539029 ~ 3718487 (-)
G2045223 LOC106612485 other upstream 158486 5868575 ~ 5870139 (-)
LOC110507410 LOC106612495 other upstream 522526 6228113 ~ 6235871 (-)
LOC110507421 gemin7 other upstream 779633 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 792326 6501784 ~ 6512110 (-)
LOC110507058 egln2 other upstream 1282294 6992367 ~ 7028249 (-)

Expression


Co-expression Network