LOC110507390 (LOC106612480)


Basic Information

Item Value
gene id LOC110507390
gene name LOC106612480
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5720390 ~ 5734365 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587362.2
ATCAGCTAGGACCAGGGAAATGGGGGTGTAGGAAGTTAAGATGCATAGTTGTTCCGTGTCTCTCGGGCTAGGCTACATGACTTGCCACTGTTCCCCACATAGACACAGCAGGCTTTCACAGCTCTACAGACGACACAACGTGCTGCTCTGCTTGTAGTAGCTAAGGTTTACTGAGAACTATGGAGGGACCTTATAAGTACATCAGGGATGGGAATGGGAAAGTTAGCCGGGTCATACGAATTGGAACCCGAAAGAGCCAGCTGGCTTGTATTCAGACGGACAGCGTTGCAGAAAAGCTGAAGGGACTGTACCCCGATGTCCACATAGAAATAGTTGGCATGACAACAACAGGGGACAAAATCCTTGACACAGCGTTATCAAAGATCGGAGAGAAGAGCCTTTTCACCAAAGAACTGGAGACTGCTCTGGAGAGGAACGAGGTAGACCTGGTGGTCCACTCTTTGAAGGACTTGCCCACGGCTCTGCCTCCTGGCTTTACCATAGGAGCTGTGCTAAAGCGGGAGAACCCCCATGATGCAGTGGTCTTGCATCCCAAAAACACGGGCAAATCCCTCGACACCCTGCCCGACAAGAGTGTGATCGGCACAAGTTCCCTGCGACGGGCTGCTCAGCTAAAGAAAAGATTCCCCCACCTTGAGTTTAAAGATATTCGAGGAAACCTTAACACGAGGTTGAAGAAGCTGGATGAAAAGGACGACTTCTCTGCCATTATTCTGGCTGCAGCTGGACTCCGTCGCATGGGCTGGGAGAGCCGAGTCAGCCAGATCCTGGGCCCTGAGGACTGTATGTACGCTGTTGGACAGGGGGCTATTGCCATTGAGGTGCGGGCCAAAGACAAGGACATCTTGGAGATGGTGTCTGTTCTGCACGACCCCAACACGGTTCTGCGCTGTATAGCAGAGCGAGCCTTCCTCAGACGACTGGAGGGGGGTTGCAGTGTACCAGTTGCTGTCCACACTGAAGTCAAGGCCTCTCAGCTCTACCTGACGGGTGCAGTGTACAGCCTGGATGGCTCAGACAGTCTCAAGGAGACCATGCAGACCAGCATTGCTTCAGACAATAAGGTGGAAGAGCGAGTGGATGAGTGGGTCCAGCGAGTTGGCGTCACAGCGAACAACATGCCAGGCCCGGCACAGGATGCATCTGAGAAGCTAGGTCTAGACCTGGCCAATCTACTGCTGAGTAAAGGGGCTAAGGAGATCCTCACCGTGGCCAGGGAGCTCAACGATGCGCAATAAACTCACTCTGTGCCCCCAGCTGGGTCTGGAGGTGTAACCTGCACTTACCGGTAGTCCATACTAATATTAAAGCTCACACATGGCTGACTGAGGACTCATGATATAGAATAGCACCACTAGACCTGGGTTCGAATAGTATGTGTTTTCATTTAGAGTTTGATTTAGCCTGCTTTCTGCGCCAGAACATTAATGTACAGGTGactgccaaaataatgggaacacttgagtaaatgacgGCTACAGTGTATATTAGTATTAAAAACAGGTGCTTCCACAGATGTTTGTgtcctgagttaattaagtaaTTAggatcccatcatgcttaggggtcatgtataaaaatactGGGCAGGCCATAGGATCACAATGCCCTCATCCACAGGGCACGAATGGTcgctgaatggtttgatgagcatgaaaacaatgtaagtCGTATGCCATGGctatctcagtcaccagatctcaacccaattgaacacatgGGAGGTTCTGAAGCAGCGCCTGagagtgttttccaccaccatcaacaaaacaccaaatgatggaatttatcGTGGAAGAAGGTTGTCGCCTCCTGCTAATagaggtgcattgaagctgttctggctcgtggtggcccaacgccctctCGAAACACtttgtgtttcctttattttggcagttacctgtacacaCGTTGAGGGACTCCATTTCTAACTGTTGTTGGGATCATGCTACCTCTTTCATCAACAGAGCTCTGATAATCTTGTTTGGTGAATGACGTGTGTGACATATTAGTGATGTCTGTTTACCAGACCCAGAACATGCAAGCTACAGTGACAAACTCTAGCTTATGAGTACTATCAGACCAAGCCCAAGGCCACCTGTCTACAACACCAGCGCCACTAGTATTATTACgtgtctatatatattttttatttgatttcccTTGATCGATGGAATACTATGTCAAGACAATTAGGAAAGCGCTGCCTATAAACAAACGCTAAACACTGGATGCCGTACAAAAACTAAATGTTGGATACCTGTGGCATTTTCCTTTCAGCGTGTTCACATAAGTTTCATGTGTTTTGATCCTGGGAGGATTTTTATTGCTTACTTGTTTTGCTATACCAATTTGAAGAACGTAAAAGCAGCGTAAAAGGACACCCAACAAACGTCCTCTGCATTCTTAAaaacagggcctgtattcatgaagcgtctcagagtaggagagctGACCAGGTACTCCCCGGCCATGTGGTCTTATTCATGATGTtcaaatctgatcctagatcaggtgTGGTATGTTCACTGTGTGTACTTGATCCAGCCTACCACTCCACGACTTCAGAATTGAACAAGAATTCCATAACCATCCCACTAGATATTGCTCATATggtaactatgtgtgtgtgtgtgttatgaagaAAATCGAGAAATTAATTGAACATACTATAGTTGTAGGCTACCTTTTAGATATGTTGTGGCATTTGTTAACAAACCTTATGCTGTCAGATAGCATAGTTTTGTGCCTtactttagtttctgtctatatgGCTGCTGCGTGTACAGCTTTGCTTACAACATTATTACCTTGAACTACAAATAGGCCTTTTCCCTTGTACCCCTTGAGCCTGCACAGGTTTTCCTGGGTGTCGCCCCATTGTGAGCCCTCTAActtatatttttgcagaattcaaTTATGTTGCATCATGTTATATTAAGTGGCGTTATGTTGTCTGACTATCGATACTCGGAAGGCGTAGAGAGGGTGGTTGTGccatatttctgtttttgcagcTTTCTGCTTTCCGCTGTAGTGCTCAGACATTTTAAGGAGACGCTGGTCAAATGATACTTGCCATACCATCTAGTCATTGAATATTGCAGCATTCAGCATGATATGACAGAATGTGGAAATGTCTTGCAATCTTCGTTAATTCTGTGTCATTAAAAGGAGGCCGCCTCAGTTAAAGCCACTTGTTACTCTC

Function

NR:

description
porphobilinogen deaminase-like

GO:

id name namespace
GO:0018160 peptidyl-pyrromethane cofactor linkage biological_process
GO:0033014 tetrapyrrole biosynthetic process biological_process
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
K01749 hemC, HMBS; hydroxymethylbilane synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587362.2 True 3232 mRNA 0.46 14 5720390 5734365

Neighbor

gene id symbol gene type direction distance location
LOC110507389 LOC105011778 coding downstream 10301 5679726 ~ 5710089 (-)
LOC110507260 nlrx1 coding downstream 83492 5635480 ~ 5636898 (-)
pdzd3a LOC106612428 coding downstream 86375 5619097 ~ 5634015 (-)
LOC110507388 ube4a coding downstream 107117 5591496 ~ 5613273 (-)
kmt2a kmt2a coding downstream 134251 5531877 ~ 5586139 (-)
LOC118944669 gfm1 coding upstream 25246 5759611 ~ 5766832 (-)
c27h19orf54 clg01h19orf54 coding upstream 60770 5795135 ~ 5798492 (-)
LOC110507406 map3k10 coding upstream 334059 6068424 ~ 6105009 (-)
LOC110507409 LOC106612510 coding upstream 488562 6222927 ~ 6224524 (-)
LOC110507410 LOC106612495 coding upstream 493748 6228113 ~ 6235871 (-)
G2045023 NA non-coding downstream 68797 5651207 ~ 5651593 (-)
G2045021 NA non-coding downstream 73600 5646480 ~ 5646790 (-)
G2044951 NA non-coding downstream 83083 5637074 ~ 5637307 (-)
G2044949 NA non-coding downstream 83986 5636187 ~ 5636404 (-)
G2044930 NA non-coding downstream 102377 5617761 ~ 5618013 (-)
G2045088 NA non-coding upstream 18183 5752548 ~ 5752780 (-)
G2045090 NA non-coding upstream 19291 5753656 ~ 5754042 (-)
G2045187 NA non-coding upstream 68053 5802418 ~ 5802814 (-)
G2045188 NA non-coding upstream 68513 5802878 ~ 5803096 (-)
G2045191 NA non-coding upstream 71811 5806176 ~ 5806656 (-)
G2043518 NA other downstream 1305967 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1340961 4378934 ~ 4379429 (-)
G2043460 NA other downstream 1371981 4343599 ~ 4348409 (-)
LOC110507356 LOC106580682 other downstream 2178637 3539029 ~ 3718487 (-)
G2045223 LOC106612485 other upstream 134210 5868575 ~ 5870139 (-)
LOC110507421 gemin7 other upstream 755357 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 768050 6501784 ~ 6512110 (-)
LOC110507058 egln2 other upstream 1258018 6992367 ~ 7028249 (-)

Expression


Co-expression Network