LOC110507391 (arcn1)


Basic Information

Item Value
gene id LOC110507391
gene name arcn1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5741262 ~ 5751139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587363.2
GTGACATATCTGTCTCGTTGTTCCATCTGTGCTCGATCTCTTTGGTTCAAGCACACATCGCGCAACTTTTGACGTTCTGAAGTTTTCTACGACAAAGCGAACGAGTGGTTTATCAAGGAAGCAACTCCGCTGGTTGGAGACGTGGCTCGCTTGGCTGCCATATTGAAGTAACTCACATTGAAGCACTACAAGCAACAAGCAGTTTAGCTAGCTATCCAACTATATTTTCTTTCTAAAGGCGCTTTAGATTTACTGGATCTTGACTGAGCAAACACCATCGGAGATTGAAGATCGTTTTCCTAACCATCTGAGATTAAATATCGTTTTCCTAAAGAGAGACCAACAATGGTGCTTTTGGCAGCGGCGGTGTGCACCAAGGCAGGCAAAGCCATCGTGTCACGGCAGTTTGTGGAGATGACCCGGACGCGTGTCGAGGGCCTGCTGGCTGCTTTCCCCAAGCTCATGGGCTTGGGCAAGCAGCACACGTTTGTGGAGACGGAGAGTGTGCGTTACGTCTACCAGCCGTTGGACAAGCTCTACATGGTGCTGGTCACCACCAAGAACAGCAACATCCTGGAAGACCTGGAGACGCTGCGGCTCTTCTCACGCGTGATCCCAGAGTACTGCCGTGTGCTGGAGGAAGGGGAAATCTCAGACCACTGTTTTGACCTGATATTCGCCTTCGACGAGATCGTGGCCCTGGGCTACAGGGAGAACGTCAACCTGGCCCAGATCCGCACCTTCACCGAGATGGACTCTCATGAGGAGAAGGTGTTCCGGGCAGTCAGAGAGACCCAGGAGCGAGAGGCCAAAGCAGAGATGCGGCGAAAGGCTAAAGAGCTGCAGCAGATCAGGCGAGACGCCGAGCGCTCGGGGAAGAAGGTGCCGGGCTTCGGCGGCTTCGGCAATGCTGGGATGAGCAGCATGTCCTCAGGGTCCATCATCACAGACACCATCATCGAACCCGAGAAACCCAAGATGGCTACCGTCCCAGTCAGGCCGACCGGATCCAGCAAAGCCCTCAAGCTGGGCGCCAGGGGGAAAGAGGTGGACAACTTTGTGGACAAgctcaggggggagggggaaacCATCACGTCCAACACAGGGAAAAGGCCTTCGCTTGCGTCCAATGTCCTACCGCCACCAGTTAATGTGGAGAGtgtccacatgaGAGTTGAGGAGAAGATCAGCCTGACCTGTGGACGTGACGGAGGTCTACAGAACATGGAGCTCCTAGGCATGATCACGCTGAGAGTGACCGACGACAAGGTCAGCCGCATCCGCCTGATGGTCAACAACTACGACAAGAAGGGAGTACAACTGCAGACACATCCCAACGTAGATAAGAAGCTCTTCACTTCAGACTCTGTGATTGGTCTGAAGAACCCCGAGAAGTCTTTCCCCCTCGACAACGACGTGGGGGTGCTGAAGTGGAGGCTCCAAAGCACAGACGATGCCCTCATACCTCTAACCATAAACTGCTGGCCTTCAGAGAGCGCTACTGGCTGCGACGTGAACATAGAATATGAACTGCAGGAGGAGAGCCTTGAACTGAACGACGTAGTTATTGCTATCCCAATACCATCTGGAGTTGGGGCACCCGTGGTTGGAGACGTGGACGGAGAGTATAAGCacgacagcagacggaacgttcTAGAGTGGAGCCTACCCGTCATAGATGCCAAAAACAAAAGCGGCAGCCTGGAGTTCAGTGTCGCCGGGCAACCCAGCGACTTCTTCCCCGTCAACGTGTCCTTTGTGTCCAAACGCAATTACTGCGACATACAGGTTGCCAAAGTGACTCACGTAGACGGAGACGCACCAGTGAAATTCTCTTTAGAAACTTCGTTCCTCGTCGACAAATACGAGATCAtgtaaaaacaaaatatatacGTCAAAGCTCCAGAGAAGACAAAATAAATACtcgcctgcctgcccgcctgtgGAACATTTTGAGACTGTACACATCAACAGGATCCAGCCCTTCAAAAGCCCTTCCCGAGGTGGAGCGCAGTATTGGTGTATTTATGTTTGTATGATAGAGAAAAAGatctacagtgtgtgtaaatataGAGTTCAATTTAACGGGCAGCGAAACATGCTGTTATTCGCCGTGGAGAGGCGGGAAGTCAAAACACGATGACTAAAGGGGCAGCAGGGAAGGGAGATGGGTGGTGCTCTCGGTTAAGTGGTGGGGTAGGAACCGTACTAGCTACAGACAGGCATCGGGGACGTGTTCACTAGAACACAAAAcggaaaaagaaaacaaaaaatatatattttctcatTTTGAGGAAAAATAAAATTAGCCTTTCTAATTATataagtccaggtagtccctccctgattcagtcagttttcttccatttggggcctaatgaacatgaccctgttgTGTTGGCTGAGGAGCTAGTCGGTATTCAGCTGGTTCATCTTCCCTGCTATAGAGGTTGAGTAATTAAAATCATCCCCACCTCGAAGAGAGTCATGCATCCTCTACCAGAGACATTTTGTATTTTATACATTGGACCAGATTTTGAAGAAAGCGCCTAGGTGGTCTTTCATGTTTTTGTTTCATAACTGCAGGTTCACCGCAAATCCAttttaatggcacctgtttaccCACTAAaggcattttttttttcattagaTTGATTAATCTCAATATGTAGCTTTAGGTGTTGGCTGTGGTATTGAGAAACTGTTAAGATGGAAAAGAGTAAGCAGCCAATTCACAAGGCAAACCACTGCGTTTGTTGGCTATAGAAGTTCTCGAAAAGTAATCATTTAAAAGCTCCATAGCAAGCTCACCGTTTTACTATTTACAAATGTATCAGTTGTTGAAAAGGAAGAGGCGATCAATATACTGTGGTTCATATCAAACAACCATCAATAGAGGGAATACTTTGGTCCTACTGCGAGGAGGACTCTCCTGCCAGTGACACCACCTCCCTCTGATGACTCCAGTCATTTACTCCCATAATGAACGGATGCTCTTTAAAACCCACTTAATCAAAAGGACAACATGTAGTGGTTTCATATGTTTTGGTTTTGATGTTTTGTTTGTATTCCCAGAATTTCAATGCGGTTGGTTGGATAATGGGGTTTGAAGATGGCTAGATGGGACATTTTATCTGTAAAGAAATACAGATGGGGAATCGTAACATTCCAGTATAAAATGTGAAGCAAAAAATCTTTAATTAATTAAAGTGTATTATTCAA

Function

symbol description
arcn1 Enables RNA binding activity. Predicted to be involved in Golgi localization; endoplasmic reticulum to Golgi vesicle-mediated transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within several processes, including Golgi vesicle transport; adult locomotory behavior; and cerebellar Purkinje cell layer maturation. Located in membrane.

NR:

description
coatomer subunit delta-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K20471 COPD, ARCN1, RET2; coatomer subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587363.2 True 3222 mRNA 0.48 10 5741262 5751139

Neighbor

gene id symbol gene type direction distance location
LOC110507053 rnf26 coding upstream 229514 5505817 ~ 5511748 (+)
cbl cbl coding upstream 302198 5375556 ~ 5514824 (+)
LOC110507051 LOC106612471 coding upstream 410339 4879928 ~ 5330923 (+)
LOC118944797 NA coding upstream 430256 5310954 ~ 5311006 (+)
LOC110507382 NA coding upstream 882674 4790174 ~ 4858588 (+)
LOC110507055 lxn coding downstream 5468 5756607 ~ 5764256 (+)
LOC110507392 itpkc coding downstream 18473 5769612 ~ 5794438 (+)
snrpa snrpa coding downstream 47474 5798613 ~ 5801513 (+)
LOC110507396 LOC106612485 coding downstream 71507 5822646 ~ 5870186 (+)
LOC110507397 sfr16 coding downstream 123552 5874691 ~ 5896127 (+)
G2044952 NA non-coding upstream 103545 5637518 ~ 5637717 (+)
G2044950 NA non-coding upstream 103955 5637074 ~ 5637307 (+)
G2044931 NA non-coding upstream 122839 5618072 ~ 5618423 (+)
G2044927 NA non-coding upstream 125024 5615254 ~ 5616238 (+)
G2044792 NA non-coding upstream 128021 5611277 ~ 5613241 (+)
G2045111 NA non-coding downstream 21547 5772686 ~ 5773445 (+)
G2045114 NA non-coding downstream 25190 5776329 ~ 5776567 (+)
G2045106 NA non-coding downstream 44858 5795997 ~ 5796497 (+)
G2045124 NA non-coding downstream 63157 5814296 ~ 5814770 (+)
G2045130 NA non-coding downstream 69149 5820288 ~ 5820689 (+)
LOC110507374 spa17 other upstream 1048390 4685868 ~ 4692872 (+)
G2043193 NA other upstream 1335136 4405458 ~ 4406126 (+)
G2040882 NA other upstream 2902335 2834096 ~ 2838927 (+)
LOC110507334 LOC106612406 other upstream 2925921 2813649 ~ 2815411 (+)
G2040863 NA other upstream 2939261 2799781 ~ 2802001 (+)
LOC110507398 znf296 other downstream 146378 5897208 ~ 5910058 (+)
G2045522 NA other downstream 743694 6494833 ~ 6495134 (+)
G2045655 NA other downstream 941405 6692544 ~ 6693044 (+)
G2045665 NA other downstream 968625 6719764 ~ 6720692 (+)

Expression


Co-expression Network