LOC110507055 (lxn)


Basic Information

Item Value
gene id LOC110507055
gene name lxn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5756607 ~ 5764256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964875.1
CGTGAGCTATTCACACACATCTTAACACCAATGTTATTGGATTTTTTGTAAGCCTTAAAAAGCCAAACACATACCATTCTGGTGCATATCCAAATGCTATCCACCCTCGGGTGTTTTTCAAAGCGAGTTTGCTAATCCGCATCTCACAGCCCTGGATGAACCAATGTTTTAGATGCAGTCATCAGCAAAACAGTGACGCATACACCATCGCACAACAGGTTAAAGTCAAGCGGGGTTCCCAAATACGAATGGGGCAATACAAGGCATCCATATTGTCATAATATCACCATCCCAAAACGAAATCAATTATGTGAACATAAAATGCTAGGTGGAACGCGCAACATGTGGCTTATTGTTTTCTGTTCTCAGATCTTAGTGTGGAGTATGGGCTGGACGCTGTTTATCCTTCTGGTTGTTCTGACCGTGGTCCACGGGAACCCGACCATGACGGTCAGAACTGGGTCAGGACCAACAGTGGGGTTCGATCAACACCCAAACAGTGTTCCTCTGGGAGAGGACATACAGACCACTACAGAGGGGGAAAGCGAGGTGGTGGAGGAAGTGATGACTACTGGCGTGCTGAACCCGAGTCACTACCCTGCCCGCCGGGCAGCCACGGTGGTCCAACACTACCTGAACACCCGCTACGGCTCACCCTACAGGTGGATCTTTTTCAGCACAGTACACAGCGGCAGCTCAGAGGATGTGGCAGAGATGGGGAGGAAGTATCAACTGGAGCTTACCGTGCAGGAGATGATCAGTAACGTTTCGGGGCAGTGCTCTGCGGAGCTCTTCTTTCcagagggagaggggcagagtGCTCCCCAGGTCCAGGCCTCCTGTGAGGGACTGCATCAAAGCAACACCACGGCTCAGGAAGAGGCCTTCTACCAGCAACACAGAGCCAGCAATAACCTAGTGTCAGGAAACAATATACCAGACAGCTACGGTCACGTGGAGCCCAGCATGAAGCCCTTCTGGCAACTGGGGGGCGTGGCCTCCAGTTTCATCATGCTGAGGGAGTCCAATGAGAGCACGCTTTACAACATGGCCCAGGTGGCCAACTTCACACAGCTGGAGACTGAGAAGGACCAGCTGAGGTTCAACTACCATGTCCTGCTGCACGAAATGATTTCCCAGGAGATCATCCACTGGAAGCTGCTAGTCACCTGGTCCCCAGAACAGGGAGTTCAAGTCCTGCAGACTGAGCTGCAGCCAAAGTGCCACCACTGCGAGGCTCCTCCAAACACCACCAACTGAGATACACGGGAAAAACACTCCAGAGCCTTACTCAAGCACTGCAGGGAAGAGTACAGCACATCTCTTTCTTAGGACTCGGATGAAGGGTAAAAGCCACTTTCTACCTGCTTTGAAAAGCTGAGCTTTACACTTCACTCTTGTCTTCAGTAATTATGTTTACCTTCACCACCACTACTGCTTCAGAGGAGGTGAGAGGGCACACGTCAATGGCCTTACTGCAGCTATATGCCGAATGCACTGCTTTTACTGGTCAGCTTGTAAGACTCTTGGTAAGCTATAACGATGTGTTTCAACTTGTTGTTAATATACTCCATTGGCCCCCTTTGCTTCATCAATAAAGCCGTCGCTGTACACAATG
>XM_036964876.1
TGAGCTATTCACACACATCTTAACACCAATGTTATTGGATTTTTTGTAAGCCTTAAAAAGCCAAACACATACCATTCTGGTGCATATCCAAATGCTATCCACCCTCGGGTGTTTTTCAAAGCGAGTTTGCTAATCCGCATCTCACAGCCCTGGATGAACCAATGTTTTAGATGCAGTCATCAGCAAAACAGTGACGCATACACCATCGCACAACAGGTTAAAGTCAAGCGGGGTTCCCAAATACGAATGGGGCAATACAAGGCATCCATATTGTCATAATATCACCATCCCAAAACGAAATCAATTATGTGAACATAAAATGCTAGGTGGAACGCGCAACATGTGGCTTATTGATCTTAGTGTGGAGTATGGGCTGGACGCTGTTTATCCTTCTGGTTGTTCTGACCGTGGTCCACGGGAACCCGACCATGACGGTCAGAACTGGGTCAGGACCAACAGTGGGGTTCGATCAACACCCAAACAGTGTTCCTCTGGGAGAGGACATACAGACCACTACAGAGGGGGAAAGCGAGGTGGTGGAGGAAGTGATGACTACTGGCGTGCTGAACCCGAGTCACTACCCTGCCCGCCGGGCAGCCACGGTGGTCCAACACTACCTGAACACCCGCTACGGCTCACCCTACAGGTGGATCTTTTTCAGCACAGTACACAGCGGCAGCTCAGAGGATGTGGCAGAGATGGGGAGGAAGTATCAACTGGAGCTTACCGTGCAGGAGATGATCAGTAACGTTTCGGGGCAGTGCTCTGCGGAGCTCTTCTTTCcagagggagaggggcagagtGCTCCCCAGGTCCAGGCCTCCTGTGAGGGACTGCATCAAAGCAACACCACGGCTCAGGAAGAGGCCTTCTACCAGCAACACAGAGCCAGCAATAACCTAGTGTCAGGAAACAATATACCAGACAGCTACGGTCACGTGGAGCCCAGCATGAAGCCCTTCTGGCAACTGGGGGGCGTGGCCTCCAGTTTCATCATGCTGAGGGAGTCCAATGAGAGCACGCTTTACAACATGGCCCAGGTGGCCAACTTCACACAGCTGGAGACTGAGAAGGACCAGCTGAGGTTCAACTACCATGTCCTGCTGCACGAAATGATTTCCCAGGAGATCATCCACTGGAAGCTGCTAGTCACCTGGTCCCCAGAACAGGGAGTTCAAGTCCTGCAGACTGAGCTGCAGCCAAAGTGCCACCACTGCGAGGCTCCTCCAAACACCACCAACTGAGATACACGGGAAAAACACTCCAGAGCCTTACTCAAGCACTGCAGGGAAGAGTACAGCACATCTCTTTCTTAGGACTCGGATGAAGGGTAAAAGCCACTTTCTACCTGCTTTGAAAAGCTGAGCTTTACACTTCACTCTTGTCTTCAGTAATTATGTTTACCTTCACCACCACTACTGCTTCAGAGGAGGTGAGAGGGCACACGTCAATGGCCTTACTGCAGCTATATGCCGAATGCACTGCTTTTACTGGTCAGCTTGTAAGACTCTTGGTAAGCTATAACGATGTGTTTCAACTTGTTGTTAATATACTCCATTGGCCCCCTTTGCTTCATCAATAAAGCCGTCGCTGTACACAATG
>XM_036964874.1
TGTCAGTTTTCTCTCATTCCCACCCTCTCTTACGTAACCCTGAATTGGATGCCTATTTACACTCAGCTTGCCTTCCTTAGGACTACGCAATCCTCTTTGGCATTAGTTTTCTGTTCTCAGATCTTAGTGTGGAGTATGGGCTGGACGCTGTTTATCCTTCTGGTTGTTCTGACCGTGGTCCACGGGAACCCGACCATGACGGTCAGAACTGGGTCAGGACCAACAGTGGGGTTCGATCAACACCCAAACAGTGTTCCTCTGGGAGAGGACATACAGACCACTACAGAGGGGGAAAGCGAGGTGGTGGAGGAAGTGATGACTACTGGCGTGCTGAACCCGAGTCACTACCCTGCCCGCCGGGCAGCCACGGTGGTCCAACACTACCTGAACACCCGCTACGGCTCACCCTACAGGTGGATCTTTTTCAGCACAGTACACAGCGGCAGCTCAGAGGATGTGGCAGAGATGGGGAGGAAGTATCAACTGGAGCTTACCGTGCAGGAGATGATCAGTAACGTTTCGGGGCAGTGCTCTGCGGAGCTCTTCTTTCcagagggagaggggcagagtGCTCCCCAGGTCCAGGCCTCCTGTGAGGGACTGCATCAAAGCAACACCACGGCTCAGGAAGAGGCCTTCTACCAGCAACACAGAGCCAGCAATAACCTAGTGTCAGGAAACAATATACCAGACAGCTACGGTCACGTGGAGCCCAGCATGAAGCCCTTCTGGCAACTGGGGGGCGTGGCCTCCAGTTTCATCATGCTGAGGGAGTCCAATGAGAGCACGCTTTACAACATGGCCCAGGTGGCCAACTTCACACAGCTGGAGACTGAGAAGGACCAGCTGAGGTTCAACTACCATGTCCTGCTGCACGAAATGATTTCCCAGGAGATCATCCACTGGAAGCTGCTAGTCACCTGGTCCCCAGAACAGGGAGTTCAAGTCCTGCAGACTGAGCTGCAGCCAAAGTGCCACCACTGCGAGGCTCCTCCAAACACCACCAACTGAGATACACGGGAAAAACACTCCAGAGCCTTACTCAAGCACTGCAGGGAAGAGTACAGCACATCTCTTTCTTAGGACTCGGATGAAGGGTAAAAGCCACTTTCTACCTGCTTTGAAAAGCTGAGCTTTACACTTCACTCTTGTCTTCAGTAATTATGTTTACCTTCACCACCACTACTGCTTCAGAGGAGGTGAGAGGGCACACGTCAATGGCCTTACTGCAGCTATATGCCGAATGCACTGCTTTTACTGGTCAGCTTGTAAGACTCTTGGTAAGCTATAACGATGTGTTTCAACTTGTTGTTAATATACTCCATTGGCCCCCTTTGCTTCATCAATAAAGCCGTCGCTGTACACAATG

Function

symbol description
lxn Predicted to enable metalloendopeptidase inhibitor activity. Predicted to be active in extracellular space. Orthologous to several human genes including LXN (latexin).

NR:

description
latexin-like

GO: NA

KEGG:

id description
K23594 LXN; latexin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964875.1 False 1618 mRNA 0.50 8 5756607 5764256
XM_036964876.1 False 1602 mRNA 0.50 8 5756609 5764256
XM_036964874.1 True 1369 mRNA 0.52 7 5757600 5764256

Neighbor

gene id symbol gene type direction distance location
LOC110507391 arcn1 coding upstream 5468 5741262 ~ 5751139 (+)
LOC110507053 rnf26 coding upstream 244859 5505817 ~ 5511748 (+)
cbl cbl coding upstream 317543 5375556 ~ 5514824 (+)
LOC110507051 LOC106612471 coding upstream 425684 4879928 ~ 5330923 (+)
LOC118944797 NA coding upstream 445601 5310954 ~ 5311006 (+)
LOC110507392 itpkc coding downstream 5356 5769612 ~ 5794438 (+)
snrpa snrpa coding downstream 34357 5798613 ~ 5801513 (+)
LOC110507396 LOC106612485 coding downstream 58390 5822646 ~ 5870186 (+)
LOC110507397 sfr16 coding downstream 110435 5874691 ~ 5896127 (+)
LOC110507398 znf296 coding downstream 132952 5897208 ~ 5910058 (+)
G2044952 NA non-coding upstream 118890 5637518 ~ 5637717 (+)
G2044950 NA non-coding upstream 119300 5637074 ~ 5637307 (+)
G2044931 NA non-coding upstream 138184 5618072 ~ 5618423 (+)
G2044927 NA non-coding upstream 140369 5615254 ~ 5616238 (+)
G2044792 NA non-coding upstream 143366 5611277 ~ 5613241 (+)
G2045111 NA non-coding downstream 8430 5772686 ~ 5773445 (+)
G2045114 NA non-coding downstream 12073 5776329 ~ 5776567 (+)
G2045106 NA non-coding downstream 31741 5795997 ~ 5796497 (+)
G2045124 NA non-coding downstream 50040 5814296 ~ 5814770 (+)
G2045130 NA non-coding downstream 56032 5820288 ~ 5820689 (+)
LOC110507374 spa17 other upstream 1063735 4685868 ~ 4692872 (+)
G2043193 NA other upstream 1350481 4405458 ~ 4406126 (+)
G2040882 NA other upstream 2917680 2834096 ~ 2838927 (+)
LOC110507334 LOC106612406 other upstream 2941266 2813649 ~ 2815411 (+)
G2040863 NA other upstream 2954606 2799781 ~ 2802001 (+)
G2045522 NA other downstream 730577 6494833 ~ 6495134 (+)
G2045655 NA other downstream 928288 6692544 ~ 6693044 (+)
G2045665 NA other downstream 955508 6719764 ~ 6720692 (+)

Expression


Co-expression Network