LOC118944669 (gfm1)


Basic Information

Item Value
gene id LOC118944669
gene name gfm1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5759611 ~ 5766832 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118944669
CATGTGGACTTCACCATCGAGGTGGAGCGAGCCCTGCGTGTTTTGAACAGGGCGATCCTGGTCCTATGTGCGGTTGGAGGGGTCCAGTGGCAGACCCTGACCGTGAACAGACAGATGAAACGCTACAACGTTCCCTTCCTCACCTTCATCAACAAGCTGGACCGCATGGGAGCCAACCCCAGCCGCGCCCTGCAGGCCATGAGGACCAAGCTGAACCATAATGCAGCCTTTGTGAACATCCCCATCagtctgggggggagggggggatgcaAAGGACATCATAGACCTCCTATAGGAGCGTAGCATGTACTTCAAGGGCCCATTCGGACAGAATATCCGGTTGGATGAGATCCCGGCGGAGTTCCGTGTGGAGGCTGCAGACAGGAGACGGTGGAGTGTGTGGCTAACGCTGACGTGACCCTGGGAGAGATGTTTCTGGAAGAGAGGATCCCCACTGTGCCAGAACTTAagGCAGCCATACGCAGGGCCACAGTGCAGCGCCTCTTCAGCCCCGTGCTGGTGGGAACTGCCCTGAAGAACAAGGGGGTTCAGCCTCTATTGAATGCAGTGCTGGATTATCTGCCCAACCCCACATAGGTCAACAACTACACCCTCTTCAACAATGAGCTCTGACCtctTGACAGCACTAAGATCCTGATGGATCCCACCAGAGATGCCTCGCAGCCCTTTGTTGGCCTGGCCTTCAAACTGGAGGTGAGCACATCACACGAACACTGTGTAGCTAGCAAACCATCTTCTCTTCAACAAACGGAGTACATCGTCCATACACGCACAGGCAAGGTTCACGTGCAGAGGCTAGTGCGTCTCCATGCCGACCAGATGGAGGATGTGGAGGTGTAGTATGCAGGGGACATCTGTGCCCTATTTGGGATCAACTGTGCCAGCGGAGACACCTTCACCTCCCGGACCAGCGCCAACCTCTCCATGGAGTCCATCCACATACCAGAGGCTGTCATCTCCATGTCTATGAAGCCGTCCAACAAGAATGACACGGAAAAGTTCTCTAAAGGCATCAACCGCTTCACCAGAGAAGACCCCACGTTCAGGGTCCGCTTTGACACAGAAAGCAAGCTCTCCCATCTCTGGTATGGGAGAGCTGCACCTGGAGATCTATTCACAGGTACTAGTCCAATTGTATAACTGCCCCTGTGCGATGGGAAAGCCCAAGGTAGCCTTCAGGGAGAGCGTGACCAGTGCGGAACCGTTTGACTTCACCCATAAGAAGCAGTCTGGTGGTTCTGGGCAGTACGGTAAAGTGATAGGAGTTCTTGAACCTCTGGACCAAGAAAACGACACAAAAGTAGAGTTTGAAGACCAGACTGTTGGAACCAACACCCCCAAACAGTTTGTGCCGGCTGTTGAGAAAGGATTCAGAGATGCCTATGAGAAAGGCCCTCTGACTGGTCACAAGATCTCAGGCGTCAAGTTCCTATTGGAAGACGGAGCGCATCACATGGTGGACTCGAATGAGATCGCCATCCGTGCAGGGGAGGGCGCTCTTAAACAAGCCATGGAGAAGGCCAACGTTGCCGTGCTGGAGCCAATCATGTCAGTAGAAATTGTGGCGCCCGATGAGTTCCAAGGGACAGTCATCGCCAGGGTCAACCATCGCCATGGCGTCATCAGTGGGCAGGATGGGGTGGAGGGCTACTTTACGCTGTGTGCTGATGGGAAAGGAGAGTACACCATGGAGTATAGCAGATACCAGCCATGTCTGCCTGGCACTCAGGAGGAGCTCATCAACAGGACAGCTGCCTGCCAAGAAGGTGAAGTGGAAGAACTGAGGCTGGACAACACACACAATCAATGAATTGTAAACACATTACAGAGggtttgaatggagctgaaggttgggaccAATAAcaatataactaatgtaaaacatacggtGTGCATAAAACATACATAGGTTAAGAACTTTTGTGAAAGAGCACAGTTTGAAAGAAATGGCAAATAAAAATCTAAccggatggacatcagaaatagatgggagaggttgagggtagaggaaggactagAGTAAAATCAAACTAAATAGAACTATTGTAAAAATAgactgtgtccataaaatgtatatagtatgtataagctggaagtagaagcctaagtgttgttgtttactccaattaggataggggtggtagggttagaaaGTAATGAAGGAAAAAATTTAAGATGTGTATGTATTTGTatgtactgtaccagtcaaaagttgacacctactcattcaaggg

Function

symbol description
gfm1 Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translational elongation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 1. Orthologous to human GFM1 (G elongation factor mitochondrial 1).

NR:

description
elongation factor G, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118944669 True 2255 mRNA 0.51 15 5759611 5766832

Neighbor

gene id symbol gene type direction distance location
LOC110507390 LOC106612480 coding downstream 25246 5720390 ~ 5734365 (-)
LOC110507389 LOC105011778 coding downstream 49522 5679726 ~ 5710089 (-)
LOC110507260 nlrx1 coding downstream 122713 5635480 ~ 5636898 (-)
pdzd3a LOC106612428 coding downstream 125596 5619097 ~ 5634015 (-)
LOC110507388 ube4a coding downstream 146338 5591496 ~ 5613273 (-)
c27h19orf54 clg01h19orf54 coding upstream 28303 5795135 ~ 5798492 (-)
LOC110507406 map3k10 coding upstream 301592 6068424 ~ 6105009 (-)
LOC110507409 LOC106612510 coding upstream 456095 6222927 ~ 6224524 (-)
LOC110507410 LOC106612495 coding upstream 461281 6228113 ~ 6235871 (-)
LOC110507423 NA coding upstream 564445 6331277 ~ 6334277 (-)
G2045090 NA non-coding downstream 5569 5753656 ~ 5754042 (-)
G2045088 NA non-coding downstream 6831 5752548 ~ 5752780 (-)
G2045023 NA non-coding downstream 108018 5651207 ~ 5651593 (-)
G2045021 NA non-coding downstream 112821 5646480 ~ 5646790 (-)
G2044951 NA non-coding downstream 122304 5637074 ~ 5637307 (-)
G2045187 NA non-coding upstream 35586 5802418 ~ 5802814 (-)
G2045188 NA non-coding upstream 36046 5802878 ~ 5803096 (-)
G2045191 NA non-coding upstream 39344 5806176 ~ 5806656 (-)
G2045193 NA non-coding upstream 41554 5808386 ~ 5808676 (-)
G2045197 NA non-coding upstream 48139 5814971 ~ 5815223 (-)
kmt2a kmt2a other downstream 217978 5531877 ~ 5586139 (-)
G2043518 NA other downstream 1345188 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1380182 4378934 ~ 4379429 (-)
G2043460 NA other downstream 1411202 4343599 ~ 4348409 (-)
LOC110507356 LOC106580682 other downstream 2217858 3539029 ~ 3718487 (-)
G2045223 LOC106612485 other upstream 101743 5868575 ~ 5870139 (-)
LOC110507421 gemin7 other upstream 722890 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 735583 6501784 ~ 6512110 (-)
LOC110507058 egln2 other upstream 1225551 6992367 ~ 7028249 (-)

Expression


Co-expression Network