c27h19orf54 (clg01h19orf54)


Basic Information

Item Value
gene id c27h19orf54
gene name clg01h19orf54
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5795135 ~ 5798492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587366.2
GAGCAAGATGCTGCGCAGATGATCAAATGGGTTTGCATTTACGGCTCTAAAGAAATAGGCTTCAACATACCCTTATGATATTATCATCACGCAATCTATTGAGTTTGAGAGCCCATCATTATGTTTCAAACAGCTATTATCCGGTTCAAAAGCTGAACTGCTTTTCAATTATTTTGTTATTGATAGATAGCTAGCAAAGTAGGTCTTCTGTTCTGTAACATTGCTGTAGCAAATGCCACATTGTAGCCGCAGCTGCCACTTTAAATGATCGCCGAGTTTGTTACCAAATATGGCTTTATTCTGCAAGCTAGCTAGTCCTAACGTGTAAAAACTTCAAAATAGCTCCCAGGTCTGCGCTTGAAGTCGTCTCGTTACAACTAAACCAGCCATGCAGTAGAGTGTTAATCAAACTGCATGTCATATGAACGTATTTCAGAAACATATTTCGCAACGTATGTCATGGTGTAACATATCTACCTCGACATGGCATCAGATGGAGAAGCTCTGACCTCTCTTATCACACAGAATTGCACAGCAGTGACAGAGGGTAGTTCAATGGGacatccacctcctccaccaccaccaggaCCACCCCCACCGGCAGCTGCCTCGGGGCCAAGCAAGAAGAAGCTGTACCAGGCCATAGCGGCAGGAAAGACCCCTGTCGAGGGGGATCATGCAGAGGCCCGGTTGCTGCTCAGTCAGAGGGAGAGCAGTTTCAGGAAGGACCTGCAGTGGATGCTGTTTAACAAGTATGTGCCTTCCCTCATCCAAGACGGCCCACAATGTGGTCTGGTGGCTCTATGGATGGCTGGTCACCTACTACAGCCCCCTCTGAGTGTTTCCATGGAGGCCGTGGTCCAGACAGCGATGGACAGGGGCTACACAGCACAGGGGGAGATGTTCTCCGCTAGTGACATGGCCATGCTTGCAGAGGAGGTGTGTGGGTGCAGGGCTGAGCTCCTGTCAGGAGGGATGAGTGGAGACAACTCTACAGCCGTCCTGAAACACCTGGCTGACGGACAACCCGTCCTCATCCCATATGATGAGGATTTCAACCATGAGCCATGCCAACGCACCGGACACAGAGCACACTGGGCAGTGGCCTCAGgtgtcttgttgGGTCTGGACCAGGACAGTGTGAGCAGAGAGCACACCCAACCGGACCCCACCCTGCCCTGGCTACTCCTGCCCCAGGACAGCTCCTCACGCCCATGCCCCTGTCCCACTGTGGGGGCAAGAGAAGCATACATCCTGGCCAAGCAGGGCAAGAGCCTGCGCTATCAGCTGTGGGGCCTGGACAAGGTGGCCCAAAGCAATGCTCAGCTGAGGGAGATAGATCCCCAGAGGGCTGGGGACAGTACCCAGTACGTGGTACCCAAGGGAGGGGTGGAAGTTGGGCTGGCAGGCCAGGTCGTGTTGGTCCACACTGGGAGACAGACCAAGTGATCATGGGCCTTCTCTCCTGGTGCACTGCTATGGTACAAATTGAGACTCATTGGCCTGGACACAGGAAAGCATGACAGTCTATAATGCTGGAAGTAGATGACATGTTGAAAGGGTCTAAGGATGCTTTCCTAGGTTGGCATTCATTTCTTCTATAGGACACCGGAGGATGATCATAAGGCAGTTCTTATCTGTCTACTACTTATCAGTATGAAACGTTTGAATGTAAAGTGGACTTTTGCCAAATCTGTGGCTCCTCTTATGGAGCCTGTTTTCCAGTACCTGAACAGATCCTGTGCCTTACTGAAATGTTTCCTTCACTTCACATGGTCGAACAAGCTGTAATATTGCATACGGTGAGAACCCCGTACCTGCCTGTATTTATACTGATTATCAAGCAACCCCAAGTGCACACAGAATAAACATATGTACTATT
>XM_021587367.2
GAGCAAGATGCTGCGCAGATGATCAAATGGGTTTGCATTTACGGCTCTAAAGAAATAGGCTTCAACATACCCTTATGATATTATCATCACGCAATCTATTGAGTTTGAGAGCCCATCATTATGTTTCAAACAGCTATTATCCGGTTCAAAAGCTGAACTGCTTTTCAATTATTTTGTTATTGATAGATAGCTAGCAAAGTAGGTCTTCTGTTCTGTAACATTGCTGTAGCAAATGCCACATTGTAGCCGCAGCTGCCACTTTAAATGATCGCCGAGTTTGTTACCAAATATGGCTTTATTCTGCAAGCTAGCTAGTCCTAACGTGTAAAAACTTCAAAATAGCTCCCAGGTCTGCGCTTGAAGTCGTCTCGTTACAACTAAACCAGCCATGCAGTAGAGTGTTAATCAAACTGCATGTCATATGAACGTATTTCAGAAACATATTTCGCAACGTATGTCATGGTGTAACATATCTACCTCGACATGGCATCAGATGGAGAAGCTCTGACCAATTGCACAGCAGTGACAGAGGGTAGTTCAATGGGacatccacctcctccaccaccaccaggaCCACCCCCACCGGCAGCTGCCTCGGGGCCAAGCAAGAAGAAGCTGTACCAGGCCATAGCGGCAGGAAAGACCCCTGTCGAGGGGGATCATGCAGAGGCCCGGTTGCTGCTCAGTCAGAGGGAGAGCAGTTTCAGGAAGGACCTGCAGTGGATGCTGTTTAACAAGTATGTGCCTTCCCTCATCCAAGACGGCCCACAATGTGGTCTGGTGGCTCTATGGATGGCTGGTCACCTACTACAGCCCCCTCTGAGTGTTTCCATGGAGGCCGTGGTCCAGACAGCGATGGACAGGGGCTACACAGCACAGGGGGAGATGTTCTCCGCTAGTGACATGGCCATGCTTGCAGAGGAGGTGTGTGGGTGCAGGGCTGAGCTCCTGTCAGGAGGGATGAGTGGAGACAACTCTACAGCCGTCCTGAAACACCTGGCTGACGGACAACCCGTCCTCATCCCATATGATGAGGATTTCAACCATGAGCCATGCCAACGCACCGGACACAGAGCACACTGGGCAGTGGCCTCAGgtgtcttgttgGGTCTGGACCAGGACAGTGTGAGCAGAGAGCACACCCAACCGGACCCCACCCTGCCCTGGCTACTCCTGCCCCAGGACAGCTCCTCACGCCCATGCCCCTGTCCCACTGTGGGGGCAAGAGAAGCATACATCCTGGCCAAGCAGGGCAAGAGCCTGCGCTATCAGCTGTGGGGCCTGGACAAGGTGGCCCAAAGCAATGCTCAGCTGAGGGAGATAGATCCCCAGAGGGCTGGGGACAGTACCCAGTACGTGGTACCCAAGGGAGGGGTGGAAGTTGGGCTGGCAGGCCAGGTCGTGTTGGTCCACACTGGGAGACAGACCAAGTGATCATGGGCCTTCTCTCCTGGTGCACTGCTATGGTACAAATTGAGACTCATTGGCCTGGACACAGGAAAGCATGACAGTCTATAATGCTGGAAGTAGATGACATGTTGAAAGGGTCTAAGGATGCTTTCCTAGGTTGGCATTCATTTCTTCTATAGGACACCGGAGGATGATCATAAGGCAGTTCTTATCTGTCTACTACTTATCAGTATGAAACGTTTGAATGTAAAGTGGACTTTTGCCAAATCTGTGGCTCCTCTTATGGAGCCTGTTTTCCAGTACCTGAACAGATCCTGTGCCTTACTGAAATGTTTCCTTCACTTCACATGGTCGAACAAGCTGTAATATTGCATACGGTGAGAACCCCGTACCTGCCTGTATTTATACTGATTATCAAGCAACCCCAAGTGCACACAGAATAAACATATGTACTATT

Function

NR:

description
UPF0692 protein C19orf54 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587366.2 False 1882 mRNA 0.50 7 5795135 5798492
XM_021587367.2 True 1867 mRNA 0.50 7 5795135 5798492

Neighbor

gene id symbol gene type direction distance location
LOC118944669 gfm1 coding downstream 28303 5759611 ~ 5766832 (-)
LOC110507390 LOC106612480 coding downstream 60770 5720390 ~ 5734365 (-)
LOC110507389 LOC105011778 coding downstream 85046 5679726 ~ 5710089 (-)
LOC110507260 nlrx1 coding downstream 158237 5635480 ~ 5636898 (-)
pdzd3a LOC106612428 coding downstream 161120 5619097 ~ 5634015 (-)
LOC110507406 map3k10 coding upstream 269932 6068424 ~ 6105009 (-)
LOC110507409 LOC106612510 coding upstream 424435 6222927 ~ 6224524 (-)
LOC110507410 LOC106612495 coding upstream 429621 6228113 ~ 6235871 (-)
LOC110507423 NA coding upstream 532785 6331277 ~ 6334277 (-)
LOC110507420 mrpl28 coding upstream 550652 6349144 ~ 6351899 (-)
G2045090 NA non-coding downstream 41093 5753656 ~ 5754042 (-)
G2045088 NA non-coding downstream 42355 5752548 ~ 5752780 (-)
G2045023 NA non-coding downstream 143542 5651207 ~ 5651593 (-)
G2045021 NA non-coding downstream 148345 5646480 ~ 5646790 (-)
G2044951 NA non-coding downstream 157828 5637074 ~ 5637307 (-)
G2045187 NA non-coding upstream 3926 5802418 ~ 5802814 (-)
G2045188 NA non-coding upstream 4386 5802878 ~ 5803096 (-)
G2045191 NA non-coding upstream 7684 5806176 ~ 5806656 (-)
G2045193 NA non-coding upstream 9894 5808386 ~ 5808676 (-)
G2045197 NA non-coding upstream 16479 5814971 ~ 5815223 (-)
kmt2a kmt2a other downstream 253502 5531877 ~ 5586139 (-)
G2043518 NA other downstream 1380712 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1415706 4378934 ~ 4379429 (-)
G2043460 NA other downstream 1446726 4343599 ~ 4348409 (-)
LOC110507356 LOC106580682 other downstream 2253382 3539029 ~ 3718487 (-)
G2045223 LOC106612485 other upstream 70083 5868575 ~ 5870139 (-)
LOC110507421 gemin7 other upstream 691230 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 703923 6501784 ~ 6512110 (-)
LOC110507058 egln2 other upstream 1193891 6992367 ~ 7028249 (-)

Expression


Co-expression Network