snrpa (snrpa)


Basic Information

Item Value
gene id snrpa
gene name snrpa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5798613 ~ 5801513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964877.1
ACAGGATCCGGAAATTACACCAGCCAATTAAAAATAGTTGGCGTTGTCTGTTAGGTTAGCTAGCAAGCTCCAGCACAAAAAGACCGTGTCGTTAGTTTCATTCATCTCTTTCGAGGCCGATTACATTGTGCATCCCAGTACTGAAAGAAGATGGCTGCTCCGGATATGCGCCTCAACCACACCATATACATCAACAACCTGAACGAGAAGATTAAAAAAGATGAACTGAAGAAGTCGTTGTACGCAATCTTCTCTCAGTTTGGTCAAATCCTGGACATTTTGGTTGCCCGCTCCCTGAAGATGAGGGGTCAGGCTTTTGTCATCTTCAAGGAGGTCAACAGCGCCTCCAATGCCCTTCGTTCGATGCAGGGGTTCCCATTCTATGACAAACCTATGCGTATTGGGTACGCCAAGGGGGACTCTGACATCATCGCTAAAATGAAGGGCACCTATGTGGAGCGTGACCGTAAGAAGGAGAAGAGGGCCAAGGTCAAGGGCCCAGAGGCTGCAGGGGCCAAAAAGGGTGTGCCAGGGACCCCTGTAGTACCCATGGGCCCTGGAGTTCCAACACCCATGCCCGGAATGCCACCCATGAGCGGAGCTCCTCGTATGATGCCAATGCCAGGGCAGCCCCCCTACATGCCCCCGCCAGGCATGATGCCACCTCCAGGGATGGGCCCTGGGGGGATGCTCCCTGGTGCCATGCCTCCAGGTGGGATGATGCCCGGGCAAATGCCCCACGCCCAGGTTGCAGAAAACCCTCCCAACCACATCCTTTTCCTCACCAACCTCCCAGAGGAGACCAACGAGCTCATGCTGTCTATGCTCTTCAACCAGTTCCCTGGGTTCAAAGAGGTGCGTCTGGTGCCTGGTCGCCACGACATCGCCTTTGTGGAGTTTGATAATGACGTGCAGGCTGGAGCGGCCAGGGAGGCACTACAGGGCTTCAAGATCACCCAGACCAACGCCATGAAGATCTCATTTGCCAAGAAATAACACACCAGAGAGCTCTTGAGTGGtttacaatcacacacacacacccccacacacacacacagagacccctCTTCCCCATTAAACTATACCAGCATAGAGCCGACTACTAACCTGTCCTTCGCTAAGAAATCACAGTGCGATACAAGCCCCCCCCAAGCTCCCCTCCCAAGACAGGCTCCCTTACACGTTTGTTGCTGCTCCTTGCTCTGCTTACAGATTATGACGTAAGAATTGTTTCAGCCTCCACCAGAAGGTAAGGAGTGGTGATTGGACGATCCCCTTCATCACCAACGCCTATAGGAGAGCAAGTCTTTTTACCCTCTTAGTTTTGAAGTTCAGCATAGACTTATTTTTTCTTGTAATTGTCTTGTTACTGCCCTTCCCGTTCTCCCGTACTAATTTAGAATAACTGGAGATGACTTTCTTTGTATCTGATGGTAGGTTGCCAGCGGTTTTAGAGAAGACGACATAAGGGCAGGATTGTGATGATTGGAATGCTGACGCCAGGCTCAAAAACGATGAAGTGTCAGGACTATGTTGGTATAGTGATTTGGTGCCGACATTGAGGATAGTTAGCTGACATTTGCATAGCCAGGTTAAGACGCGTTTTCAAGTATGTCAGTTTCTGCACCCGTTCCTCGAGGACAAAATCTGGTGTTTTGTATGTAAGtatattttcatttttattgtttgtcTGTTGAAAAGCATTGCACCCAGGGTCTGTTTCATCCAGACATTGTACCTGGAGCTTTTATGTTTGAttaaaatgtgtgtattttataatGACTAA

Function

symbol description
snrpa Predicted to enable U1 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of U1 snRNP. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPA (small nuclear ribonucleoprotein polypeptide A).

NR:

description
U1 small nuclear ribonucleoprotein A

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0017069 snRNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K11091 SNRPA; U1 small nuclear ribonucleoprotein A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964877.1 True 1786 mRNA 0.49 7 5798613 5801513

Neighbor

gene id symbol gene type direction distance location
LOC110507392 itpkc coding upstream 4175 5769612 ~ 5794438 (+)
LOC110507055 lxn coding upstream 34357 5756607 ~ 5764256 (+)
LOC110507391 arcn1 coding upstream 47474 5741262 ~ 5751139 (+)
LOC110507053 rnf26 coding upstream 286865 5505817 ~ 5511748 (+)
cbl cbl coding upstream 359549 5375556 ~ 5514824 (+)
LOC110507396 LOC106612485 coding downstream 21133 5822646 ~ 5870186 (+)
LOC110507397 sfr16 coding downstream 73178 5874691 ~ 5896127 (+)
LOC110507398 znf296 coding downstream 95695 5897208 ~ 5910058 (+)
LOC110507399 LOC106612489 coding downstream 129255 5930768 ~ 5957003 (+)
LOC110507400 LOC106612489 coding downstream 158484 5959997 ~ 5993183 (+)
G2045106 NA non-coding upstream 2116 5795997 ~ 5796497 (+)
G2045114 NA non-coding upstream 22046 5776329 ~ 5776567 (+)
G2045111 NA non-coding upstream 25168 5772686 ~ 5773445 (+)
G2044952 NA non-coding upstream 160896 5637518 ~ 5637717 (+)
G2044950 NA non-coding upstream 161306 5637074 ~ 5637307 (+)
G2045124 NA non-coding downstream 12783 5814296 ~ 5814770 (+)
G2045130 NA non-coding downstream 18775 5820288 ~ 5820689 (+)
G2045132 NA non-coding downstream 22169 5823682 ~ 5823882 (+)
G2045133 NA non-coding downstream 24023 5825536 ~ 5825771 (+)
G2045140 NA non-coding downstream 46339 5847852 ~ 5848596 (+)
LOC110507374 spa17 other upstream 1105741 4685868 ~ 4692872 (+)
G2043193 NA other upstream 1392487 4405458 ~ 4406126 (+)
G2040882 NA other upstream 2959686 2834096 ~ 2838927 (+)
LOC110507334 LOC106612406 other upstream 2983272 2813649 ~ 2815411 (+)
G2040863 NA other upstream 2996612 2799781 ~ 2802001 (+)
G2045522 NA other downstream 693320 6494833 ~ 6495134 (+)
G2045655 NA other downstream 891031 6692544 ~ 6693044 (+)
G2045665 NA other downstream 918251 6719764 ~ 6720692 (+)

Expression


Co-expression Network