LOC110507396 (LOC106612485)


Basic Information

Item Value
gene id LOC110507396
gene name LOC106612485
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5822646 ~ 5870186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964866.1
GGCTGGCATCCCTTTCCGCTGAGTTCTTTCCCACCGCCGATACGCATGGTTACTTGATCGGGACCTGGGTGATTCGGATCTGTTAGCCCTGAGCGAAAGTGACCACACGGGTTGGAAAGCCTACGGAAAGAGTGAGGGACGAAGCATGCAGTGGATAAACAAGAGAGTAGAGTCTTGACTTCTAGAGAGGGAGATTCTACTTCATTTGGCTATCAATTTGAGTCCTTTGCGCAAAGAAGGAAAGGGTGTATGCGTATGTGTTTAGTTTGAAGGGCGAGTGCGTTGCGCATAGGGAGAGTGTAATTGGGAAGAGAGCTCAAGTCAGGGAGCCAGCAGGTCTGACATTCAAAGCCTTAACCGCAGGTGGAGGGAAGATCGACCTGGTGGAGTGAGcgtattttttcttcttctgtggcaAGACCCACTCTGGATACCGCACCAAGAGCGGGAGAAGCCGGGGCGAGTGGTCGAGGAGGGGCGGGCAGGCAGGAGGAACTCCCCAAGGGGAACAGCACAAAAAAGGCAACAATGCCAAATACGTCGCGATGAACTGACGCTCAAAGAGAGCTGAGAAAGGGATATTATAGAGTAGAGGGGACACCGCATTGTTTTACGTCCTCGATAATTTGAcgttgagatggagagagaacgagcGCACGGACGAAAGCCGGTTGATTGCTGCAGGGGAGGCGCGAGGACCAGCACCAGGACAGAGATGAGGAAAGAACGGGGCCGGGGACAGCAGTGGACCGTGATTTTTATCGTCGCCCTTTCTCTGCAACCGCAGgttgtgTGTGCAGTGGGGATGTTTGAGCTCCAGATCCGTCACTTCCAGAACCCCCATGGTGTGCTGCAGAGTGGGGAGTGCTGTGACCTCCAGGCCACAGGGGGGCAGCGCTGCTCTCTCACGGACCAGTGTGACACCTTCTTCAGGGCCTGCCTCAAGGAGTACCAGGCCCGGGTCGTCCCCACAGGAGCCTGCACCTTCGGGGCGGGCAGCACCACCGTCCTGGGGGGCAACACCCAATCCCTCCGTCATCAAGGGCACgacggaggaggaagagaggatggcaCTACAGGGCACATCATCATTCCCTTCAAATACGCCTGGCCGAAATCTTTCTCCTTGGTGTTAGAGGCTCTGGACCATGACAACGAAACATCAGAATCAGgTCAGGCTGGTCTGATCGAGcgtgtcctcctgtcctccatgttgAATCCCGGCGAGCAGTGGCAGACTTACCGTCACCACGGACGCCCGCTCAGCCTGGAGTACCGCCTGCGGTACCGCTGTGACTCCAACTACTACGGCCCCTTCTGCAACAAGTTCTGCCGGCCCCGGGACGACTTCTTCGGACACTTTGGCTGTGACCTCAGCGGCATCAAGGTCTGCAAGGAGGGCTGGACCGGGCCGGAGTGTCAAGAAGcgGTGTGTAGACAGGGGTGTCACCAGATCCACGGCTCCTGCTCTGTGCCTGGAGAATGCAAGTGTCACTATGGCTATCAGGGAGCTCTCTGTGACCAGTGTGCGACGTTCCCAGGCTGCGTCTATGGCAGCTGCGCTGAaccctggcagtgtgtgtgtgacgtcaACTGGGGAGGCCTGCTGTGTAACAAAGATCTGAACTACTGCGGTACCCACCGACCCTGTAAGAATGGGGGCACCTGTTCCAACACAGAGCCTAACGAGTACCAGTGTGAGTGCCAAGAGGGCTTCCGCGGGCGCAACTGTGATATCGTGGAGCATGCgtgcctctcctccccctgtgcGAACGGGGCCACCTGTGCGGAGGACCCTTCGGGTTTCAACTGTGTCTGTGCCGACAGCTGGACCGGACACACCTGCGCAGACGTGGTGCGGCAGTGTGACTCAAAACCGTGTGGGCGCGGAGCAACGTGCCAGGAGTCTCCAGAGAGGTTCCGGTGCCTCTGCCCCCCCGGCTGGACTGGCAGAACCTGCCGACTAGACACCAACGAGTGtgacatgggtgtgtgtgtccatgcccGCTCCTGCCGTAATCTGATTGGCGGATACCTGTGTGATTGCCTGCCAGGCTGGGCGGGGCCAAACTGTGACATTAGGAACAGCAGTTGCCAGGGGTTGTGTCTAAACGGAGGTCACTGTGAGGACTCTGTGTCAGGCTCACGCTGCCTGTGTGTGCCTGGTTTCTCTGGGAAGCACTGCCAGACTGGCCCCAGTCCCTGTGACAGCACCCCCTGTCAGCACGGAGGCCAGTGTGTGGACAAGGAGGGCAGGGCGGAGCTGTGTAGCTGTCCCATCGGCTACTCAGGGACGTACTGCGAGGTGGTGGTGGATCTGTGCAATCCCAACCCATGCCAGCAGGGGGTGTCCTGTCAGAGCACCGAGGGGGGGTACATGTGTGCCTGCTCCGAGGGTTACTATGGTAACGAGTGCACAAGCCTTAAGGACCCCTGTCATGGCCAACACTGTCCAGgTGCCATGTCAGACCCGGCTCGTGGAGGGGTCAATCTCTACATGGTGTTGGTGGGTGTGTCAGCGTTACTAATGGCGTGCGGCTGCGCAGCTtgcgctctcttcctctcccgtCTCCACCGACGACGGAAAAAAACGCAGGGCGGGCCCCAGGAGGAGGGCATCAACAACCAGAGGGAGTTGGTCACCCTCGTCCGAAACCTGGACCGCCCCGCACCCCTCCTGCCCCCTCTCACCCCCAACACCACCGCCCACACCCCTGTCCCTGTACTGCGCTGCTGCGAGGAGATCGAGCTCACTCTGCCCCCCTCCCCGGCCCCCTCACACCCCTCCCCTGCACTCAAACCCTCAACCCCCGCTGCCAAACAGGACATCTCCAACCTGGAGAGGGAGAAGCTCAACCGCTTCCACTACTCAGACAATCAGGAACTGGAGGTGTGACCTTTGAACTGTCAGAGGCTTTTATTATTTTTGCGCCCACTTCTCTCTGCCTGGCCCTGGACCCCAGCGCTGTGCCATgctgcataggttcctgtggtgATGACCTCACCCGACCCATCCCTCTCTGAGTTGACTCCTCATCTTTTGTGAGCTGAGATTGTCATCTGCTAAATAGCATATATTATTGGTGTAGAATGCTGGGCCTACGGGGTTGCTAAGCAGATCATCAAGAAACAGCATGGCGGTGAACTTTAACCTCCGACTTATGACATCATGCACTTCTGACCTGCTGACCCCGGAGCTAATCTTATGAAGGTTGGCCTTGAGTTAGAGTCTGGCTTGTGTCTGAGGGTCTCTGTGTTTTATGGGAACAACTGTGAGGAGCCATTTGAGCCATTCCCCAGGTGTTAATATCCCTCTGTAGGCACCCCACTGCCCTGGTTGCCCTGGAAGGCCTGGATGGCCTGCTAGTGGTATCTGTAACTGAACCTCTACAGAGACTGTGGCCCTGCACTGTGGCCTCCTGGGCTGGAAGGCAACTGACAGGGGATGCGAGGGAAGGGCAAAGTGATTTTTAATTCCAACTAGTCCATTTCCACATTAATTATTGAAGGATAAACTGTGGTgtaattattgtgtgtgtgtgtctttgtgtctgcGTGTGTCAGTGCGAGGTGTGTGTACGCGGGTCAGTGCGAGGTGTGTGTACGCGTGACagtgcgaggtgtgtgtgtgataagcATTACAGACCATCATGCCTGTtgccaggagggagagagaaaatgactGAAGGAGCAACAAAAGAGCAAAAAAGAATCAATGAATGCAAgctttagatttaaaaaaaaaaaaaaaagagggaaaGGTCAGACAAGAGAGTAGAGCCTGACCCCAATCCATTTGAACCATGAGAGAACGGAGTTAAAACACAACACTGTTGCCTGTGCGGTCTCTGTAACACACTGCGGTTGTCAaagatgtcaaatgttttttataccTGTGTGTAAAATAGCTCTGTTGTATATATGTTGTACATATTGATATTGGGGGTTTTTTTTGTACTGTGGTTTGTCTCTGAATGTCGCTGTTTTACTTTGCGCtatttgtcctctctctccttccattcgTCTGGGGCTGCCAGCAGGTGTGGATCGTAATTAAAGTGCATTTACCTTCCAAATCCA

Function

NR:

description
PREDICTED: protein jagged-1b-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964866.1 True 4080 mRNA 0.55 13 5822646 5870186

Neighbor

gene id symbol gene type direction distance location
snrpa snrpa coding upstream 21133 5798613 ~ 5801513 (+)
LOC110507392 itpkc coding upstream 28208 5769612 ~ 5794438 (+)
LOC110507055 lxn coding upstream 58390 5756607 ~ 5764256 (+)
LOC110507391 arcn1 coding upstream 71507 5741262 ~ 5751139 (+)
LOC110507053 rnf26 coding upstream 310898 5505817 ~ 5511748 (+)
LOC110507397 sfr16 coding downstream 4505 5874691 ~ 5896127 (+)
LOC110507398 znf296 coding downstream 27022 5897208 ~ 5910058 (+)
LOC110507399 LOC106612489 coding downstream 60582 5930768 ~ 5957003 (+)
LOC110507400 LOC106612489 coding downstream 89811 5959997 ~ 5993183 (+)
LOC110507403 fosb coding downstream 132529 6002715 ~ 6007384 (+)
G2045130 NA non-coding upstream 1957 5820288 ~ 5820689 (+)
G2045124 NA non-coding upstream 7876 5814296 ~ 5814770 (+)
G2045106 NA non-coding upstream 26149 5795997 ~ 5796497 (+)
G2045114 NA non-coding upstream 46079 5776329 ~ 5776567 (+)
G2045111 NA non-coding upstream 49201 5772686 ~ 5773445 (+)
G2045268 NA non-coding downstream 66153 5936339 ~ 5936640 (+)
G2045272 NA non-coding downstream 80865 5951051 ~ 5951352 (+)
G2045273 NA non-coding downstream 81518 5951704 ~ 5953046 (+)
G2045277 NA non-coding downstream 137788 6007974 ~ 6011892 (+)
LOC110507374 spa17 other upstream 1129774 4685868 ~ 4692872 (+)
G2043193 NA other upstream 1416520 4405458 ~ 4406126 (+)
G2040882 NA other upstream 2983719 2834096 ~ 2838927 (+)
LOC110507334 LOC106612406 other upstream 3007305 2813649 ~ 2815411 (+)
G2040863 NA other upstream 3020645 2799781 ~ 2802001 (+)
G2045522 NA other downstream 624647 6494833 ~ 6495134 (+)
G2045655 NA other downstream 822358 6692544 ~ 6693044 (+)
G2045665 NA other downstream 849578 6719764 ~ 6720692 (+)

Expression


Co-expression Network