LOC110507398 (znf296)


Basic Information

Item Value
gene id LOC110507398
gene name znf296
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5897208 ~ 5910058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964868.1
tgtggggaacagaagtcctcacaaggatagtaaaacaatgaACATTAGGACAAGTGGATGCATTTTTCTGGTCCCCCACAAGGAAGTTTATTTTAGGGAAAGGAGGTTATGTTTAGGAATTAGGGAAATGTGATTTTTGAATGGCAATCAATTGTTTGGTCTGTAAAAGGATTGTAAAACAAACTGTCTGTGACATTGTATAGAGGGCGGGTTCGGGTCGGTGTAGTATAGTGGCGGGCGGCGCCTATGCCCCTGCCCCTCCTTTCCTCCGCTGTGGGGCTGGTAGCCTGAACTTGAACACTGGCTGGTGCACAGTTAGTCACTACGACGTCCCGTCGGTGGCATAGAGCTACACAGTCATTTGGTCAAAGCTATTCTTATCAACTTGATACTTTTTAAAATTCGATTCCGATTCGGAGTGTGGATGCACCGGCAGAACGTTGACTGGTGCGATTAAGCAGAATGTCCAGACGCAAACAAGGCAGCCGACCGCAACACCTGAGTGCAATTCAAGATGCCCCTGAGCCCTCGGACACTGCCGCTCCTTCGCCATTAGAGGAGTGGGGCTCCCTTCCCCAGGTCAGGGGTCGTGAGGAGAGTCGTGACCTACTGACCTGTGGGCAGTGCGATCAGGCCTTCCCTCTCGCCCGCATCCTGGCCTTCATCCAGCACAAACAGGGGGGCTGCCGCTCCCGGAATCACGGCCCCAACActcacacccctccctccccagccAACCGGACACAGCAACGCGGTGCTGTCACTCAGGTAGAGGCTGGGTTCGTGGAGCTGAGGAGAGTGACGGACAGGTCCAAAGCGGAGGAGCATAGTGTGAAGGTGGAGCCTAACATAACAGAAGAGCCGTCCTGCTTTACCTGCcagctgtgtgagtgtgtgttgccCTCTGCCTGGGCCCTGCTCCAACACGCCCAGCACACACACTCCTTCAGCATCTACCAGGAGGacggggagaaggaggagaagatgggAAGAGGGGGTCACCAGCACTCCAAACCTGCAGCCACCCTGGATCCCTGTCAACTGAGCCACACCCTGGCCACCGCCTTCCACCCTTCCGCTCTGCGTCTGCCCCACATCTTCCGTCCACGGCAGAACCGCAGGCCAGCTTCTCAGGCCAGCTCCACCCCTTCCTCCAGAGAACGACAGGCCCTCAACTTCTGTCTGAGGGAGCTGGCTGAGGGCGGTAACACCACCGCTGGTGTTCTGGTCCCCTCTCCGTCGCCGTCCCCCCCGGCCGCATCTTCCTTCCCCCAGTGTGGACCCGCCCAGGTGGGGTTTCCCTGTGAGCTGTGTGGCCAGGGCTTCCAGTCCCTCCGCAGCCTGTCAGCCCACCGGAGGACCCACGCATGCGAGCGGCCCTACCACTGTGGCTTGTGTGACCAGGCCTTTGCCCAGAGTGGTCAGCTGGCTCGCCACATGAGGAGTCACCGCAGTGAGACGGGCGTGGGTAGAGGGGGCTACGAGGGAATGGAGGTGGGGCTGGTAGGGGAGGATGAGGGGGGTCggcaggggatgagagagaggtttATCATGCAGGGGGCAGGAGAAGCGGTGTTGAGTGGAgcaccaggagagagggagacctcTGAGGTGGACCTGTCCATGTCCAAGCATCACTCCCCAGACTCTGGACTGATCCTTCTCTCCTCCCAGCCTGGAGGTCCAGACATGAGCCTGCTCAGGCTGTTCCAACCCCAGGGAGAGTTGGCGGACGATGAGGTGGAGGGACAAGAGGAGCCCCAGCACGCGTCCCCCTGCGCCAGCCCCTCAGAGGGGTCACTGGAAAGCGGAGAGACTGGGGGCAGTGGGGAGAGTGGCATTGCCAGCGGAAACTGCACCCCCAAACGGccggagagggaggacagggctCCGGTAGGGGGGGAGTGGGAGAGCGAGCGGGACGGAGAGATGGcggatggagagaaggagtggTTTGCAGGCGGGAGCAGCGAGGTGGTCCAGGAGTGGCAGAGGGAGAgcgaacagagaggaggaggaaacggCGTCATCAGCAGTAACTGTGGTAGCAACGACGGGGGGtcagggaagaagaagaaggaggaggccTGTGAGTACTGTGGGAAACAGTTCCGGAACAGCAGCAACCTGACGGTGCACCGGCGCAGCCACACGGGAGAACGACCCTACCAGTGTGGCCTGTGCAGCTACGCATGCGCCCAGAGCTCCAAGCTCACACGCCACATGAAGACCCACGGTGCCCACGGGGCCCGCGCCCCATTCCTGTGCCAGCTGTGCGGGGTGCCCTTCACTGTGTACGCCACCCTGGAGAAACACCTGAAGAAGGTGCACGGGCTGAGCCATGCCAGCATCGGGACCTACACCCAGGCCAGCGCAGCTGATGTCAACTGGGCCCTTGTCCAAATGGATGACAGGGTGGTCATCAAGATGGAGGACGATGAAGCCACTACGGACCAGAcagaaaacaacatggctgccATGGTGGAGATGGGATTGGAGGCTGAGGAGAACCAGAAAGGGGAGGTGGATGGTACTGTCAGCCCAGCCGTAGTGGAGGATAGTGTGGGTGAGCTTCCTGCTGAAGGCCGTGCGGACGTGGGCTCAGCGTAAACTTCTGGTCCACCTTAGCTGCCATATCACACTGTTGTACACTGACCAAGACATTCAAAAGCACTGGCTTGGACTGTCACTCATTCCAACCACTTTGACCAACATAAATATCCATAGAATTGTAATGAACCTTTCCTAGCACTCAACTGGTAATCAATTCAAACTGGAATCTAGGTACCAACCCTGCTCTCCTCTTAATTCCCTATCTGTGCCATGCTGAGGTACGTCACGTCTTGCCTGAGCTGATAATTAGCATATGCAAACCCGCCTACTTAGACCACAGCACAAAACCCTGACATGCAATGGAAAGGAGGGCGGCAAATAGGACTTGAGAACAGGAAGTCAACCACCACAGTCCACCAGATCACAGGAAGTTGATCACCATGCTCCAGCACAATATAGGAAGTGGACACCAGTGGTCAAATGATTGGTTCACTCAGTCGACGTACTAGTGATGATTACCAATAGGAACTGTCAAATGTAGAAAGCAAAAAAAGGGCTTGTAAttatgatttttattttatatatctaGTGGCATGAGATTACTATGATTAGTGAGGCTTTCATATCCTGTTCTGTTGCTGTGGTGACAACTGGCAGGGTGGTTGTCACACTCTAATTCGTCCACAGACTAGTTGTTTGGACAGAGATGGGGTCAAAGGGGAAACGAACCCAAACCGGTTTCTCTGTATCCTTTTTAGATTTAGCTTTTGACACAACACTTGCCACTTAATGTAAAGTTTACAAGGCTCGCGAGGCCCATTTAAGTTCTGTTGTTCCTCTGTGTGTCTCATCCAATGTGTATACGTCTCATCTGCTGATGTTTTCCGAGCTTAGCTGCTAAGCATAAAGAAACTGCCATTTTGACTACAAATGAAACGGGTGTGGATTTATTTCCTTTTGTACTTCATAATTGGATGATCTTTTTTCTTTCCTTTTTGTTTACGTTTATAAAACGCGGGAAACCCCTTGAAGTTTGCGCATATGCATGTTTTGCTGCCATTTGAAATGGTTTGAATTTGATGGGTGGGAGAGTTTTTTTGTGGGTaacaccgtgtgtgtgtttgtgtgcagagAAGTTGTTTGGTAACACTTGACTTGAACTGTCAGTCAAATGCCTCGCTAACTACAACCGAAACATGACCAGCTGTTTGCTTGGAAACGGAGCCTATGCCCATGACAACGATGCACGCAGCGGCAGGCAAGATAACTGTGGCTAACCTTTTAGCTATAGTGGCTGAGAACATGGTTTGAGTGAAGTGTCACCAACTATTTTgtgactactgactactacttACGTTATCATTATTGATGTCAATATACACTGGCGGCAGGGAACCCTTATTTTTTGGACACTTTGAAAAAAACAATTCTTTGCGTTGTGTATGAAACTAGTGACGGGGTCAAATGTGTACGATTTGATGGACATGAGCGGAGTGTAGTTGTTCAGGGACCCATGTTATGTGCATAGAATGGCACTCGCAGATGTCGCTGCCACTGATATCGTCAATTGACTGTGCTGTATGCCTCAAACTCAACTCAGTTTCCCAGAATTCTTGGTTTTCTCTGTCTGTGCTGACTACAATGAGGCTAACGACACCACTGTCTTTGTAAACTTGACACCATTTTGTCATTGACCTGGTTATGAGGAGTCTCATTAAAGAATTGAGGCaaa
>XM_036964867.1
gaacagaagtcctcacaaggatagtaaaacaatgaACATTAGGACAAGTGGATGCATTTTTCTGGTCCCCCACAAGGAAGTTTATTTTAGGGAAAGGAGGTTATGTTTAGGAATTAGGGAAATGTGATTTTTGAATGGCAATCAATTGTTTGGTCTGTAAAAGGATTGTAAAACAAACTGTCTGTGACATTGTATAGAGGGCGGGTTCGGGTCGGTGTAGTATAGTGGCGGGCGGCGCCTATGCCCCTGCCCCTCCTTTCCTCCGCTGTGGGGCTGGTAGCCTGAACTTGAACACTGGCTGGTGCACAGTTAGTCACTACGACGTCCCGTCGGTGGCATAGAGCTACACAGTCATTTGGTCAAAGCTATTCTTATCAACTTGATACTTTTTAAAATTCGATTCCGATTCGGAGTGTGGATGCACCGGCAGAACGTTGACTGGTGCGATTAAGCAGAATGTCCAGACGCAAACAAGGCAGCCGACCGCAACACCTGAGTGCAATTCAAGATGCCCCTGAGCCCTCGGACACTGCCGCTCCTTCGCCATTAGAGGAGTGGGGCTCCCTTCCCCAGGTCAGGGGTCGTGAGGAGAGTCGTGACCTACTGACCTGTGGGCAGTGCGATCAGGCCTTCCCTCTCGCCCGCATCCTGGCCTTCATCCAGCACAAACAGGGGGGCTGCCGCTCCCGGAATCACGGCCCCAACActcacacccctccctccccagccAACCGGACACAGCAACGCGGTGCTGTCACTCAGGTAGAGGCTGGGTTCGTGGAGCTGAGGAGAGTGACGGACAGGTCCAAAGCGGAGGAGCATAGTGTGAAGGTGGAGCCTAACATAACAGCAGAAGAGCCGTCCTGCTTTACCTGCcagctgtgtgagtgtgtgttgccCTCTGCCTGGGCCCTGCTCCAACACGCCCAGCACACACACTCCTTCAGCATCTACCAGGAGGacggggagaaggaggagaagatgggAAGAGGGGGTCACCAGCACTCCAAACCTGCAGCCACCCTGGATCCCTGTCAACTGAGCCACACCCTGGCCACCGCCTTCCACCCTTCCGCTCTGCGTCTGCCCCACATCTTCCGTCCACGGCAGAACCGCAGGCCAGCTTCTCAGGCCAGCTCCACCCCTTCCTCCAGAGAACGACAGGCCCTCAACTTCTGTCTGAGGGAGCTGGCTGAGGGCGGTAACACCACCGCTGGTGTTCTGGTCCCCTCTCCGTCGCCGTCCCCCCCGGCCGCATCTTCCTTCCCCCAGTGTGGACCCGCCCAGGTGGGGTTTCCCTGTGAGCTGTGTGGCCAGGGCTTCCAGTCCCTCCGCAGCCTGTCAGCCCACCGGAGGACCCACGCATGCGAGCGGCCCTACCACTGTGGCTTGTGTGACCAGGCCTTTGCCCAGAGTGGTCAGCTGGCTCGCCACATGAGGAGTCACCGCAGTGAGACGGGCGTGGGTAGAGGGGGCTACGAGGGAATGGAGGTGGGGCTGGTAGGGGAGGATGAGGGGGGTCggcaggggatgagagagaggtttATCATGCAGGGGGCAGGAGAAGCGGTGTTGAGTGGAgcaccaggagagagggagacctcTGAGGTGGACCTGTCCATGTCCAAGCATCACTCCCCAGACTCTGGACTGATCCTTCTCTCCTCCCAGCCTGGAGGTCCAGACATGAGCCTGCTCAGGCTGTTCCAACCCCAGGGAGAGTTGGCGGACGATGAGGTGGAGGGACAAGAGGAGCCCCAGCACGCGTCCCCCTGCGCCAGCCCCTCAGAGGGGTCACTGGAAAGCGGAGAGACTGGGGGCAGTGGGGAGAGTGGCATTGCCAGCGGAAACTGCACCCCCAAACGGccggagagggaggacagggctCCGGTAGGGGGGGAGTGGGAGAGCGAGCGGGACGGAGAGATGGcggatggagagaaggagtggTTTGCAGGCGGGAGCAGCGAGGTGGTCCAGGAGTGGCAGAGGGAGAgcgaacagagaggaggaggaaacggCGTCATCAGCAGTAACTGTGGTAGCAACGACGGGGGGtcagggaagaagaagaaggaggaggccTGTGAGTACTGTGGGAAACAGTTCCGGAACAGCAGCAACCTGACGGTGCACCGGCGCAGCCACACGGGAGAACGACCCTACCAGTGTGGCCTGTGCAGCTACGCATGCGCCCAGAGCTCCAAGCTCACACGCCACATGAAGACCCACGGTGCCCACGGGGCCCGCGCCCCATTCCTGTGCCAGCTGTGCGGGGTGCCCTTCACTGTGTACGCCACCCTGGAGAAACACCTGAAGAAGGTGCACGGGCTGAGCCATGCCAGCATCGGGACCTACACCCAGGCCAGCGCAGCTGATGTCAACTGGGCCCTTGTCCAAATGGATGACAGGGTGGTCATCAAGATGGAGGACGATGAAGCCACTACGGACCAGAcagaaaacaacatggctgccATGGTGGAGATGGGATTGGAGGCTGAGGAGAACCAGAAAGGGGAGGTGGATGGTACTGTCAGCCCAGCCGTAGTGGAGGATAGTGTGGGTGAGCTTCCTGCTGAAGGCCGTGCGGACGTGGGCTCAGCGTAAACTTCTGGTCCACCTTAGCTGCCATATCACACTGTTGTACACTGACCACTTTGACCAACATAAATATCCATAGAATTGTAATGAACCTTTCCTAGCACTCAACTGGTAATCAATTCAAACTGGAATCTAGGTACCAACCCTGCTCTCCTCTTAATTCCCTATCTGTGCCATGCTGAGGTACGTCACGTCTTGCCTGAGCTGATAATTAGCATATGCAAACCCGCCTACTTAGACCACAGCACAAAACCCTGACATGCAATGGAAAGGAGGGCGGCAAATAGGACTTGAGAACAGGAAGTCAACCACCACAGTCCACCAGATCACAGGAAGTTGATCACCATGCTCCAGCACAATATAGGAAGTGGACACCAGTGGTCAAATGATTGGTTCACTCAGTCGACGTACTAGTGATGATTACCAATAGGAACTGTCAAATGTAGAAAGCAAAAAAAGGGCTTGTAAttatgatttttattttatatatctaGTGGCATGAGATTACTATGATTAGTGAGGCTTTCATATCCTGTTCTGTTGCTGTGGTGACAACTGGCAGGGTGGTTGTCACACTCTAATTCGTCCACAGACTAGTTGTTTGGACAGAGATGGGGTCAAAGGGGAAACGAACCCAAACCGGTTTCTCTGTATCCTTTTTAGATTTAGCTTTTGACACAACACTTGCCACTTAATGTAAAGTTTACAAGGCTCGCGAGGCCCATTTAAGTTCTGTTGTTCCTCTGTGTGTCTCATCCAATGTGTATACGTCTCATCTGCTGATGTTTTCCGAGCTTAGCTGCTAAGCATAAAGAAACTGCCATTTTGACTACAAATGAAACGGGTGTGGATTTATTTCCTTTTGTACTTCATAATTGGATGATCTTTTTTCTTTCCTTTTTGTTTACGTTTATAAAACGCGGGAAACCCCTTGAAGTTTGCGCATATGCATGTTTTGCTGCCATTTGAAATGGTTTGAATTTGATGGGTGGGAGAGTTTTTTTGTGGGTaacaccgtgtgtgtgtttgtgtgcagagAAGTTGTTTGGTAACACTTGACTTGAACTGTCAGTCAAATGCCTCGCTAACTACAACCGAAACATGACCAGCTGTTTGCTTGGAAACGGAGCCTATGCCCATGACAACGATGCACGCAGCGGCAGGCAAGATAACTGTGGCTAACCTTTTAGCTATAGTGGCTGAGAACATGGTTTGAGTGAAGTGTCACCAACTATTTTgtgactactgactactacttACGTTATCATTATTGATGTCAATATACACTGGCGGCAGGGAACCCTTATTTTTTGGACACTTTGAAAAAAACAATTCTTTGCGTTGTGTATGAAACTAGTGACGGGGTCAAATGTGTACGATTTGATGGACATGAGCGGAGTGTAGTTGTTCAGGGACCCATGTTATGTGCATAGAATGGCACTCGCAGATGTCGCTGCCACTGATATCGTCAATTGACTGTGCTGTATGCCTCAAACTCAACTCAGTTTCCCAGAATTCTTGGTTTTCTCTGTCTGTGCTGACTACAATGAGGCTAACGACACCACTGTCTTTGTAAACTTGACACCATTTTGTCATTGACCTGGTTATGAGGAGTCTCATTAAAGAATTGAGGCaaa
>TU2339435
GCACAGTTAGTCACTACGACGTCCCGTCGGTGGCATAGAGCTACACAGTCATTTGGTCAAAGCTATTCTTATCAACTTGATACTTTTTAAAATTCGATTCCGATTCGGAGTGTGGATGCACCGGCAGAACGTTGACTGGTGCGATTAAGCAGAATGTCCAGACGCAAACAAGGCAGCCGACCGCAACACCTGAGTGCAATTCAAGATGCCCCTGAGCCCTCGGACACTGCCGCTCCTTCGCCATTAGAGGAGTGGGGCTCCCTTCCCCAGGTCAGGGGTCGTGAGGAGAGTCGTGACCTACTGACCTGTGGGCAGTGCGATCAGGCCTTCCCTCTCGCCCGCATCCTGGCCTTCATCCAGCACAAACAGGGGGGCTGCCGCTCCCGGAATCACGGCCCCAACActcacacccctccctccccagccAACCGGACACAGCAACGCGGTGCTGTCACTCAGGTAGAGGCTGGGTTCGTGGAGCTGAGGAGAGTGACGGACAGGTCCAAAGCGGAGGAGCATAGTGTGAAGGTGGAGCCTAACATAACAGCAGAAGAGCCGTCCTGCTTTACCTGCcagctgtgtgagtgtgtgttgccCTCTGCCTGGGCCCTGCTCCAACACGCCCAGCACACACACTCCTTCAGCATCTACCAGGAGGacggggagaaggaggagaagatgggAAGAGGGGGTCACCAGCACTCCAAACCTGCAGCCACCCTGGATCCCTGTCAACTGAGCCACACCCTGGCCACCGCCTTCCACCCTTCCGCTCTGCGTCTGCCCCACATCTTCCGTCCACGGCAGAACCGCAGGCCAGCTTCTCAGGCCAGCTCCACCCCTTCCTCCAGAGAACGACAGGCCCTCAACTTCTGTCTGAGGGAGCTGGCTGAGGGCGGTAACACCACCGCTGGTGTTCTGGTCCCCTCTCCGTCGCCGTCCCCCCCGGCCGCATCTTCCTTCCCCCAGTGTGGACCCGCCCAGGTGGGGTTTCCCTGTGAGCTGTGTGGCCAGGGCTTCCAGTCCCTCCGCAGCCTGTCAGCCCACCGGAGGACCCACGCATGCGAGCGGCCCTACCACTGTGGCTTGTGTGACCAGGCCTTTGCCCAGAGTGGTCAGCTGGCTCGCCACATGAGGAGTCACCGCAGTGAGACGGGCGT

Function

symbol description
znf296 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of dendrite development and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in telencephalon. Orthologous to human ZNF296 (zinc finger protein 296).

NR:

description
B-cell lymphoma/leukemia 11A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964868.1 False 4285 mRNA 0.53 3 5897208 5910058
XM_036964867.1 False 4238 mRNA 0.53 4 5897214 5910058
TU2339435 True 1160 TUCP 0.61 3 5897517 5907239

Neighbor

gene id symbol gene type direction distance location
LOC110507397 sfr16 coding upstream 1081 5874691 ~ 5896127 (+)
LOC110507396 LOC106612485 coding upstream 27022 5822646 ~ 5870186 (+)
snrpa snrpa coding upstream 95695 5798613 ~ 5801513 (+)
LOC110507392 itpkc coding upstream 102770 5769612 ~ 5794438 (+)
LOC110507055 lxn coding upstream 132952 5756607 ~ 5764256 (+)
LOC110507399 LOC106612489 coding downstream 20710 5930768 ~ 5957003 (+)
LOC110507400 LOC106612489 coding downstream 49939 5959997 ~ 5993183 (+)
LOC110507403 fosb coding downstream 92657 6002715 ~ 6007384 (+)
LOC110507404 cssa09h19orf47 coding downstream 102343 6012401 ~ 6021237 (+)
LOC110507405 LOC106612492 coding downstream 118105 6028163 ~ 6065070 (+)
G2045140 NA non-coding upstream 48612 5847852 ~ 5848596 (+)
G2045133 NA non-coding upstream 71437 5825536 ~ 5825771 (+)
G2045132 NA non-coding upstream 73326 5823682 ~ 5823882 (+)
G2045130 NA non-coding upstream 76519 5820288 ~ 5820689 (+)
G2045124 NA non-coding upstream 82438 5814296 ~ 5814770 (+)
G2045268 NA non-coding downstream 26281 5936339 ~ 5936640 (+)
G2045272 NA non-coding downstream 40993 5951051 ~ 5951352 (+)
G2045273 NA non-coding downstream 41646 5951704 ~ 5953046 (+)
G2045277 NA non-coding downstream 97916 6007974 ~ 6011892 (+)
LOC110507374 spa17 other upstream 1204336 4685868 ~ 4692872 (+)
G2043193 NA other upstream 1491082 4405458 ~ 4406126 (+)
G2040882 NA other upstream 3058281 2834096 ~ 2838927 (+)
LOC110507334 LOC106612406 other upstream 3081867 2813649 ~ 2815411 (+)
G2045522 NA other downstream 584775 6494833 ~ 6495134 (+)
G2045655 NA other downstream 782486 6692544 ~ 6693044 (+)
G2045665 NA other downstream 809706 6719764 ~ 6720692 (+)
G2046345 NA other downstream 1335748 7245806 ~ 7251575 (+)
G2046384 LOC106612398 other downstream 1346573 7256631 ~ 7258230 (+)

Expression


Co-expression Network