LOC110507400 (LOC106612489)


Basic Information

Item Value
gene id LOC110507400
gene name LOC106612489
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5959997 ~ 5993183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110507400
TTCCCTTTCGCCCATCTAGTAGAGACAGACTGCCCTCTATAGTGACAACATTTAGTAGCCTACTATCGATTGCAGTCGGGCACTGCGAAGAGGCGCTCACATCAGAGACCCCACATGACTGGCTTGATGGAGAGGACCGTTGTAACTAAATACAGGCAATGTGTGGAAGAAGAATTGTGAAATAATGTGTTTTTAAAGGAAGAAGAGGAAAATGTGTGCGTGAGAAAGCAAGACCTTGACGTTTTAATAAACAGCGGTTGTAGGCCATCACACATTTAATCGACATGGGATTAACTAACCACGGAAAATGATGCAAATGGACGATAAACAATAGAGTTCTAAGTAAGATCCTGGTACCATGTCATTACCCCAACTCCAGCTGACTAACTTCCCGGAGGCTCTGCATACCTCTCCCAGATGGTTCGAGTAAGTGGGTGGGTAAGCCTATGTGTGTATTTAAGAACTGGATTTGTTTGTTGCACAATTCCCCAAAACGGAGCTACGACGAACAAATCGAGATAGGAATGTTGGTTCAATCTGACTTTATTTGCTAGGCCTATTATTTTCAAATTCATCTCAATTTTAGCATTGAAAATGGAGTCTCAGCAGGTCACACCTGGATCCATTGCCAACCCGGTAAAATTTGGGGGCCAGGACTATGTAGCTCTCCTAGATGCGTGCGTTAAATCCGGTTCGCTGTTCTCTGACCCAACCTTCACCCCGGACCAGAGCTCCATCGGTATGCCTACCGACCCAGACCCCAAAAAGGAGATCAAGTGGCTGCGACCCAAGgagaTCAGGGCCAATGCTGTGTTTGTGGAGGACACGACTTGTACCACCGATATCTGCCAGGGCCAGCTGGGTGACTGTTGGCTTCTggctgccctgtcctgccttacCATGCACTCCAATCTCTTTGTCAAAGTGGTACCACCTAATCAGAGCCTGACAGAATCCTATGCTGGCATCTTCCACTTCATGTTCTGGCAGTATGGTGAGTGGGTGGAGGTGGTAGTAGATGACAGGCTACCTGTACGCGAGGGCCGCCTGCTCTTCAGCTACTCCTGTACCCGCAACGAGTACTGGAGCGCCCTGGTGGAGAAAGCCTATGCCAAGCTGATCGGGTCGTATGGCAGTCTGAAGGGAGGTAATATCTCTGAGGCAATGGAGGACTTCACAGGCGGCATAGcctactccctccctgtctcctcacGCACCCCAAGGGTCATGTGGAAAGCCCTCTCCGCTGCCCTGTCCCGTGGCAGCCTGCTCAGCTGCTTCATAcagGCTAGTAACTATCGTGAGATAGGCACAGTGACTGCAGAGGGACTGGTGAAGGGCCATGCCTACGCCATCACAGACACTGACACGgtgaagaagccggatggtGAGGCCTTGTTGCTGAGGCTGAGGAATCCCTGGGGCTTTGTGGAGTACTCTGGACCCTGGAGTGACAAGAGTAAAGACTGGGACGATGTGGATGCTGCTGAAAAGAAAAGGATTGAGCTGAAAAAGAGTGAGGATGGAGAATTCTGGATGAATGTGGAGGACTTCAACAGGCTGTTTGACACAGTGGAGCTGTGTAGCGTGAACCCTGAACCCATAGTGGACGGGGACACACCCGACTCCCCTGCCGCCCCCACCTCTGCATGGACACTCAGCTCCCACAAAGGCTCCTGGGTATCGGGCTCCACCGCAGGGGGCAGTCGTAGTTACCGTCgaTCCTTCTGAAAGAATCCCCAGTTCCAGCTTGTCCTTGCCGAGCAGGACAAGGAAGaagaagatgatgatgaagatgaggatgaAGAGATGACCCCGGAGGAGAAGATGGTGGCagagaagcagaagaagaaagcaaagcagtgcaccGTGCTGGTGGAACTACTGCAGAAAGACCGGAGAAAGAGGAATAAAATTAACTTTCTCCACATCGCCTTCCACATctacaggGTTCCTCCAGAGCTCCAGGGCCTGTGTTTGGACCAGAGTTTCTTCTCTAACCAGCACCCTGTGGGGCGCTCTGGGAAGTACCAGCCCCTCAGAGCTGTGTGGAGGAAGGTGAGGCTGGACCCGGGAAACTACGTGATCCTGGCCTCCACCTACAGGCCCAACGTGCCTGCGGAATTCTTCCTCCGCGTCTACTCCAAGACTGGCAACAATCTGGGGACCCAAGACTTCACTTGCTCCACTGGCTTCCTCATGGTCATGTCAATGCCACCAGTCTTGCCAGAGGATCGCAAGAGAGTACAGAAGACCTTTGATGAGGTGGCGGGGCCGGATGACAAGCTGAATGCTAAGGagttcatgaagctggttaactCAGttctGGAGAAAGACTACCAGCTGCCACTGGAGACATGCAGACAGCTCATCTTTGGAGAGGAAACTGGGGGGCGTAGCAGTCTGACCCGAGAGCAGACAGAGCCTGTGCTGACCTCTCTTCGCAGTCTGCAGTCCATCTTCTTCAAGTTTGATCAGGACTCTTCAGGGACTATGAGCCCCTTTGAGCTTAGTCTGGCCCTCCAGGCTGCtggtgtgcagtgtgatggccaGGTCATACAGCTGCTGTGGGAGAGGTTTGGCTCTGGGGAGCTGCACCTGCCTTTCCACGGCTTTGTGACCTGTGTCTCCAGGCTGCGCAAGCTATTCGCCTTGTTTAAATCAGAGAGCAACCCAGAGATCAAAGGCGTAGAAATCAATGCCTGGCTGCTCCGACTCCTGACCGTGTGAGCGTGCTCTGTAAAGGAGGTTTCTGCGTGGGCACTGCAGGGTCATTCTGTCTGACCAGGACCATATGATAACATCATGCCTCCGCCGGCGCcctcgtccacacacacacagg

Function

NR:

description
LOW QUALITY PROTEIN: calpain-9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110507400 True 2842 mRNA 0.53 22 5959997 5993183

Neighbor

gene id symbol gene type direction distance location
LOC110507399 LOC106612489 coding upstream 2994 5930768 ~ 5957003 (+)
LOC110507398 znf296 coding upstream 49939 5897208 ~ 5910058 (+)
LOC110507397 sfr16 coding upstream 63870 5874691 ~ 5896127 (+)
LOC110507396 LOC106612485 coding upstream 89811 5822646 ~ 5870186 (+)
snrpa snrpa coding upstream 158484 5798613 ~ 5801513 (+)
LOC110507403 fosb coding downstream 9532 6002715 ~ 6007384 (+)
LOC110507404 cssa09h19orf47 coding downstream 19218 6012401 ~ 6021237 (+)
LOC110507405 LOC106612492 coding downstream 34980 6028163 ~ 6065070 (+)
LOC110507407 sipa1l3 coding downstream 119337 6112520 ~ 6207567 (+)
qpctla LOC105011981 coding downstream 224756 6217939 ~ 6223022 (+)
G2045273 NA non-coding upstream 6951 5951704 ~ 5953046 (+)
G2045272 NA non-coding upstream 8645 5951051 ~ 5951352 (+)
G2045268 NA non-coding upstream 23357 5936339 ~ 5936640 (+)
G2045140 NA non-coding upstream 111401 5847852 ~ 5848596 (+)
G2045277 NA non-coding downstream 14791 6007974 ~ 6011892 (+)
G2045391 NA non-coding downstream 232005 6225188 ~ 6226090 (+)
LOC110507411 tbcb non-coding downstream 247339 6240480 ~ 6246883 (+)
G2045453 NA non-coding downstream 356663 6349846 ~ 6350342 (+)
G2045506 NA non-coding downstream 458849 6452032 ~ 6452234 (+)
LOC110507374 spa17 other upstream 1267125 4685868 ~ 4692872 (+)
G2043193 NA other upstream 1553871 4405458 ~ 4406126 (+)
G2040882 NA other upstream 3121070 2834096 ~ 2838927 (+)
G2045522 NA other downstream 501650 6494833 ~ 6495134 (+)
G2045655 NA other downstream 699361 6692544 ~ 6693044 (+)
G2045665 NA other downstream 726581 6719764 ~ 6720692 (+)
G2046345 NA other downstream 1252623 7245806 ~ 7251575 (+)
G2046384 LOC106612398 other downstream 1263448 7256631 ~ 7258230 (+)

Expression


Co-expression Network