LOC110507405 (LOC106612492)


Basic Information

Item Value
gene id LOC110507405
gene name LOC106612492
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6028163 ~ 6065070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965264.1
TGGCTGTGGTGCTGAAGCGGCGCATGCCGGGGGCTCGAGCGCAGACACACAATCGAAGACATCCTCTCGCGCGATGGTCAAAAATAGATAGAAGAGGGCTTGTAATTCAGGAATCAGTTCATTTCAGCATTGTCATGTCTGGCcaattatttgtgatttttataTAAAATACAATTTACGGTAATCTGAATTTGTGTAAGCTGTTTTGATAGCTTATTGCCTATTTGCGCGGTGCGTGCTAGGTTTTTATTCTCTCGCTCTCATCTGTATTGTTGTTGCCTGCCTGTCTCGCGCGTTCTTTATGCACAGCACGCCGCTCCAGTCCTCGGAGTAAATAGACCTTCGTCGGAACAGCATGGCCCGGTCCAGTCGCGCCCACTGAGAGAGATGGAAGCAAAACAGCACTCCATAAAGAGCCTGAAGAGCTACCCAGAGGCGGGGGGCCGGAGCCTGGCGGCGGCCGCGGGGGACGTCGGCGTTGGAGGAGGGTGTCTTGCAGGCTCGGCACAGATGGAGATGGAGGCAAACATACAGAAAGCCATTGACTTCAAGGTGGAGGGCCACCGCTGCTACAAGGAGAAGAAATTCCGGGAAGCGATAGGGAAGTACCACCGGGCTCTGCTGCAGCTGAAAGGGGTGCATTTAGTGGATGAAAGCACGGACTCCGAGGTCAACCTCCTGAGCCAAGCCGCCGTCAAGCTGACGGAAGAGCAGCGGAGAACCGTGGAGATCACGGAGATCGAGTGTTACGACAGCCTGACAGCGTGCCTGTTGCAGTCCGAGCTGGTGAACTATGAGCGTGTGAAGGAGTACTGCCTGAAGGTGCTGGGTCACCAGAGGGACCACTTCAAGGCCATGTATCGCGCTGGCATCGCCTGCTACCACCTGGGAGACTACGACTGTGCCCTGCGCTACCTGCGTGACGCTAAGCACCGCGAGCCCTCAGACACAAACGTGCTGCGGTACATCCAGTTGACGGAAATGAAGATGAATAGGGAGGGTCAGCGGGAGCGGGAGAGCGGCAAAGAGGCCCTTGGCTAACCTTTGACCTTTTGGCCTCTCTATCACTATGGCCTATGCTACGACCCATCCTACgtcacctctcctctctgacctcttctcctcctttatgGAGCCCAGTCCCAATGATGACTGGCCCGAGCGATGCGCCTCAACCATGTAAAAGAACAGGGCAGAAAaagccctgtctctctccctctcttctcctcccccccccccccccccccccccccccccccaggcgcTGTTGTTCTGTACCCCAGATGCAGACTGACAAACCAAGAAAAAAACGAAGCAGAGGgaaatactatactatactcaTACAAAACAGTCATGGTTGTCCGAATGAAAAAAAAACTGCTTCAAAAAATATATGATCAAAGAAAACTGCGTACTTTAGAGAAggtgtaaaaaaatgtaaaatagagTAGAATTTCTTATTTATTCTTTCGATGTGAGGACTGAGGAGAGGTCCAGGGTTGGGAAAGGGACCAGGGGAGGGCAGGGGAAGGAGTTTAGGAGAAAGGAAATGGTGTAACACATATCAAGACCTTAGGCCAATTCAACTGTACTCCCTGACCCCTGCCCTGACACAATGGAGGGAGGTCTGAAAGCCACTGACCCAGACTTGTCCCGGAGAGAGATTGTCCCCCCAGTACAGTACTGATCAGGCTAGCTAGCAGGCTACATCTCTGTCTTTTTAATACGAAATAGTCTTCAGACAAGCCGACCTTTGCGCTCATGTTCAATCAATCTTCTTTTTCGTTTTCAGCTTGTTGTACCTTGTCTCTATTTCTGGACGGTTTTTAAATTCAAGGGCTAATTCAAGTGTTTGTAATTTGTCCTTTGATCATTTTTTTGTCTCCTGTTTGATTTTCATTGCACTTACGACTATCGGTTGTTATGAAGCAAAATGTGTGTCCTTCCTCTTTCTAAGGAACAAACTAACTCCCACCGGACTCGCTGTTCCTctgtttaacaggtgtgtttttGTGAACCGGTGTCTTGAATCTGTTGTCCAATCCCCCctggaatgtgttgtgttgtcagaCTGTTAACCCCCCCCcgccaccccccacccctctccgctTTCTagctaatgatgtcacaatggaaaATAGCCAGTGGAACTGAGGTTCCATCAAGCACCCTTGGCTGCACAGAGTTCTCTGATTTTTTTACTCTGAGATCTACTTCCAGGCCCTTGATCACTCATGCTGAACCTTCCCAGGCGTCAGTGACATCACAAGACACTCTTGGCAGTGTTCGTGCAGGGAATCCGATCCCACATGCTGTATCCGTCTGAGGTGTATCAGCCATCTCAACCCAGTCAGTTAAAAACATCAACCCGAGTGTGCCATTTGAGATTCCGAATTTTGTTGTGCATATTCTAATAGATATCAGTGTTGCGACAAACAAAGAAATCGGTTCAGAAAATAAATGAGTACAAAAATGGCTGTCTCCATAGGCAGATTACACAACAGTAGTGGTAGACCAAGACAAGGGAGGATTGTGATTGGGGCAAGGCCAGAtaatgacatattacacatacaGACCATCATACCACTGCATACTTTCTAAATACCAATCCCAGTGATGCTGATAAAGCCTGAAGGGTTTCTAGGATTTATAGAAATACGTAGACTTACCTGCCCTGTTCTAAAGGAGAGGTTTGAGTTGACCTTAATTCCGCCATCTAATACCGTGTAACCCAGTTTCCTTCACCCTATGTGCAAGCCAAGCCCCTGCATGGTAATGTGTGGCTCAAAGGGGAAGCCATTTTGGATGTCGGGGATAATGTCTGGTTCATTGCTTTCTATAACAGGGCAGGTTGCTCCCCCTATTCAATGTATCCCGCTAATACCCTCTATGCTCCCTGCAAACGTAGAATGGGTTAATGGAGTAGTCAGCGGCATAGCCTGAAAAGGACCTCGGTATCTTGTGTCTCGCATCGGGTAATTTTCTGAGACTTATATGGTCCCATGCAGAAAGAAATGAAGGTCAGCAGCAGTGGTCTGCCTTGGCCAAGGCGAGGAGAATAATCCCAAAAGGACTTCAGAGGAGTGGATAATACAAGATCAAAACGATAACAGATCTCATCATTTGCCTGTGGCCTAATATGAGGGACATTGGGACCAAAGTGCATCAATaagaggaggctgttgaggggaggacggctgatAATGATGTCCGGAAcggtggaaaccatgtgttttgacgtatttgatacctttccactattctgctccagccattaccacgagcccgtcctccccaactcaggtgccaccaacctcctgtggtgtcaaTGGGACTCTGGAGAGGCAGCAGCGCGATGCCCGGAGCAAATTTGTGGGATCCAGAGACGCGCTCCACTGTAGAGGGAAATGGGCCAGCAGCACCAGTAACACAGCAGGAGTGCAGTGTCACTCTGACACTGTGGAGATGGGATTATGTTAAAGCAGCGTTGTGAAGAGGTTCGGGGGAGGTTTACACCTTGGTACAGAGACACGGCGTGGAAAAACCCAGAGGCACCAagaactctctttctttctcgcgctctctatttctctctctctggttctcattctcttcccctctctccagatTTCTCTCCATATCTCAATTTAAATTCaaattgctttattggcatgacgtttCAATGTCCATATTGCCACGCCTACTTTGCAAATGGATATATATTTAACAATATTAACATCATCAacaaaatgtaataataataattgggaTTGTCAatgaaatatacactgagtataccaaacatcggggaatggactctacaaggtgtcgaaagcgttccacagggatgctggcccgtgttgactccaa

Function

NR:

description
tetratricopeptide repeat protein 9B-like

GO: NA

KEGG:

id description
K24930 TTC9; tetratricopeptide repeat protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965264.1 True 3870 mRNA 0.49 3 6028163 6065070

Neighbor

gene id symbol gene type direction distance location
LOC110507404 cssa09h19orf47 coding upstream 6926 6012401 ~ 6021237 (+)
LOC110507403 fosb coding upstream 20779 6002715 ~ 6007384 (+)
LOC110507400 LOC106612489 coding upstream 34980 5959997 ~ 5993183 (+)
LOC110507399 LOC106612489 coding upstream 71160 5930768 ~ 5957003 (+)
LOC110507398 znf296 coding upstream 118105 5897208 ~ 5910058 (+)
LOC110507407 sipa1l3 coding downstream 47450 6112520 ~ 6207567 (+)
qpctla LOC105011981 coding downstream 152869 6217939 ~ 6223022 (+)
LOC110507411 tbcb coding downstream 175410 6240480 ~ 6246883 (+)
LOC110507412 clptm1 coding downstream 182545 6247615 ~ 6265219 (+)
LOC110507416 NA coding downstream 230768 6295838 ~ 6324480 (+)
G2045277 NA non-coding upstream 16271 6007974 ~ 6011892 (+)
G2045273 NA non-coding upstream 75117 5951704 ~ 5953046 (+)
G2045272 NA non-coding upstream 76811 5951051 ~ 5951352 (+)
G2045268 NA non-coding upstream 91523 5936339 ~ 5936640 (+)
G2045391 NA non-coding downstream 160118 6225188 ~ 6226090 (+)
G2045453 NA non-coding downstream 284776 6349846 ~ 6350342 (+)
G2045506 NA non-coding downstream 386962 6452032 ~ 6452234 (+)
G2045520 NA non-coding downstream 427024 6492094 ~ 6492423 (+)
LOC110507397 sfr16 other upstream 132050 5874691 ~ 5896127 (+)
LOC110507374 spa17 other upstream 1335291 4685868 ~ 4692872 (+)
G2043193 NA other upstream 1622037 4405458 ~ 4406126 (+)
G2040882 NA other upstream 3189236 2834096 ~ 2838927 (+)
G2045522 NA other downstream 429763 6494833 ~ 6495134 (+)
G2045655 NA other downstream 627474 6692544 ~ 6693044 (+)
G2045665 NA other downstream 654694 6719764 ~ 6720692 (+)
G2046345 NA other downstream 1180736 7245806 ~ 7251575 (+)
G2046384 LOC106612398 other downstream 1191561 7256631 ~ 7258230 (+)

Expression


Co-expression Network