LOC110507409 (LOC106612510)


Basic Information

Item Value
gene id LOC110507409
gene name LOC106612510
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6222927 ~ 6224524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110507409
ATGGCGATGGTCTTCTCGGTAGAACAGGTGGCGTATGTGCGAGGTCCTTCTGCAGAGCGGACGCATGGAGCGCTTGACTGACTTCCTCTACACTCttcccccctctacctcctcttgcCTGGGGGGTCTGGAGAGCATCCTGAAGGCGCGGGCTGCCATGGCCTTCCATCTGGGGCGCTTCTCGGACCTCTACGCCCTCCTGGAGGGCTTCCACTTCTCCAATCGCAGCCACCCCCTGCTGCAGCAGCTCTGGCTGAGGGCACACTACCTGGAGGCCGAGTGTCAGAGAGGGCGCCCCCTTGGGGCTGTGGGGAAGTACCGCATACGCCGTAAGTTTCCCCTGCCAAGAACCATCTGGGATGGAGAGGAGACCAGCTACTGCTTCAAGGAGAAATCCCGGAGTGTGCTGTGGGAGTGGTATTACTGTAAACCCTACCCTTCACCACGTGAGAAACGAGCGCTTGCGGCCGCCACCGGTCTCACCGCCACCCCGGTGAGCAACTGGTTCAAGAACAGACGGCAACGAGACCGAGCAGCTCACGGTACTACCGGggAACAGAAAGGTTGTGGACCACCTCTTGGCTCCAACAGAACCCCAGGAGCAGCATATCCAAAGGCCTACCCCTTCTCTGACAATGGACGTTCACCTCCAGGCAGCCCCAGTCCCCTCTTCTCCTGTTCACAGCCCCCACTTCTGAGCCATATGGGTGGGGGACAACTCTGAATCTCTTCACTACCTGAGCCATCATGTATAGTCGGCTCACTTCATAGGCACGATTCACTTGTCCTGCCAGAAATGTATGTAAGACCATTCAATCTTTTGAGTAGCGTAGTTTCATGATACCCTGTACCGAAAACTGTAGGTTGTGTTAAATCAAAGTcaaaagcaaaacattttttaaatagtttAATTGAAAACACAAATGTGTCATCAGACCTAATCATTGACAAGCACTTGAAGCATTTGGGAATAAACAATATGGTTTGA

Function

NR:

description
homeobox protein six1a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110507409 True 988 mRNA 0.54 3 6222927 6224524

Neighbor

gene id symbol gene type direction distance location
LOC110507406 map3k10 coding downstream 117918 6068424 ~ 6105009 (-)
c27h19orf54 clg01h19orf54 coding downstream 424435 5795135 ~ 5798492 (-)
LOC118944669 gfm1 coding downstream 456095 5759611 ~ 5766832 (-)
LOC110507390 LOC106612480 coding downstream 488562 5720390 ~ 5734365 (-)
LOC110507389 LOC105011778 coding downstream 512838 5679726 ~ 5710089 (-)
LOC110507410 LOC106612495 coding upstream 3589 6228113 ~ 6235871 (-)
LOC110507423 NA coding upstream 106753 6331277 ~ 6334277 (-)
LOC110507420 mrpl28 coding upstream 124620 6349144 ~ 6351899 (-)
trnastop-uca-4 NA coding upstream 127799 6352323 ~ 6352409 (-)
LOC110507422 LOC106612386 coding upstream 133649 6358173 ~ 6363321 (-)
G2045715 NA non-coding downstream 156399 6062148 ~ 6066528 (-)
G2045725 NA non-coding downstream 260939 5961458 ~ 5961988 (-)
G2045723 NA non-coding downstream 268929 5953685 ~ 5953998 (-)
G2045719 NA non-coding downstream 273110 5949564 ~ 5949817 (-)
G2045718 NA non-coding downstream 273681 5949012 ~ 5949246 (-)
G2045869 NA non-coding upstream 663 6225187 ~ 6225889 (-)
G2045879 NA non-coding upstream 20481 6245005 ~ 6246876 (-)
G2045878 NA non-coding upstream 38633 6263157 ~ 6265208 (-)
G2046000 NA non-coding upstream 271736 6496260 ~ 6496468 (-)
G2045223 LOC106612485 other downstream 352788 5868575 ~ 5870139 (-)
kmt2a kmt2a other downstream 681294 5531877 ~ 5586139 (-)
G2043518 NA other downstream 1808504 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1843498 4378934 ~ 4379429 (-)
G2043460 NA other downstream 1874518 4343599 ~ 4348409 (-)
LOC110507421 gemin7 other upstream 265198 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 277891 6501784 ~ 6512110 (-)
LOC110507058 egln2 other upstream 767859 6992367 ~ 7028249 (-)
LOC110507059 dscaml1 other upstream 957561 7182085 ~ 7411701 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013546 six9 coding NC_007129.7 CM002902.2 37237714 ~ 37241115 (-)
grasscarp (Ctenopharyngodon idella) CI01000013_00151644_00152374 SIX9 coding CI01000013 null 151135 ~ 153096 (+)
bowfin (Amia calva) AMCG00000574 six1,six1b,LOC107589069,LOC107697302,LOC107563694 coding CM030141.1 CM030141.1 18512046 ~ 18515368 (-)