LOC110507410 (LOC106612495)


Basic Information

Item Value
gene id LOC110507410
gene name LOC106612495
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6228113 ~ 6235871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587394.2
GACAGGCTGAAAAGTGTTTGCTGAAAAAAAAAGAAGGCTGTAGGCCTATTTAGTACAATCTGATAACAACATCAGATTGTCAACAAAATAATGTGAATGTTCAATCTTGAATTAAGCAATAACATTTATctaccagtagcctaataaaaAAGGTATTGAACAGGCAGTGCTATAATGAATCTTCGAATGGGAGATTGACGAGGTTAGGGGCGTGTGTGACGCGTGTAGCTGTGGCAGACACTCGTCCACggagaatagaagagagagagagagcgtgcaggggagggaggaggaactAAAAGAAAAAAGTTCAAACTAAAAATGGCTTCCTTGTCTTTGGAGTCTGCAGAACAATCCGAGAATAGCACGGAGGAGTCTACCCAAGAGGCCGCTCTGGTAAAAGAGGAGACGGATCCGGATGAAGTTTCAGAACAATTGCTAAAAACTTTCCAGAACTCGGCGCTCAGCTTTTCGACAGATCAAGTAGCATGTCTGTGCGAAGCCCTTCTACAGGCGGGCAATGTGGATCGCCTGTGGAGATTCCTATCAACCATCCCTCCTTCGGCCGAGCTGCTACGTGGCAACGAGACGCTGCTCAAGGCCCAGGCACTAGTCGCTTTCCACCGGGAAGAATTCAAGGAGCTGTACGCAATATTGGAAAGCCACGACTTCCACCCCAGCAACCATGGGTTCCTGCAGGACCTCTACTTGCAGGCGCGCTACAAGGAGGCGGAGAGGTCCCGAGGTCGTAGCCTGGGCGCCGTGGACAAGTATCGGCTTCGGAAGAAGTTTCCCCTGCCGAAAACAATCTGGGATGGAGAGGAGACTGTGTATTGTTTCAAAGAGAAGTCTCGCAATGCACTGAAAGAGTGTTACAAAGGCAACAGGTATCCCACTCCAGACGAGAAGAAAAACTTGGCCAAAGTGACTGGACTCTCCCTCACGCAAGTTAGCAATTGGTTCAAGAACCGACGGCAGAGAGACCGAACCCCGTCCGGTACCAACAGCAAAAGTGAGTCCGATGGTAACCACAGCACAGACGATGAGGGTGATGACATCTCAGACAAACCAGAGGACATTGTGGGCTCCAcagcctccatctccctctctggcACCCCCTGCAGCACTGGAGGCCAGCTCTTCCTCAACGGGGCAGGTGGGTTCCTCACCGCCTCCCACCCCTTACTCATCAACGGGGGCTCCCTGATCTCCGGGGCAGGGGGTGGCGTCATCATCAACGGGCTGACCCTGAGCGATGGTCACACGGTTACCCTCAGCCCCATATCGGCTAACTCACCTCTGCTCTTCAATGGAGCGCAGGTCATATCCAAGAGCAGTGAGGATATGGGTCTTGAGGGCCAGGGGGTTATGGCCATGGAGGCCCAGCCCAGCTctgccatctccctccctctgacAGAGGATCTTAAGACGGACAATGTAAGCCTGACGAACCCCTCAACCATCCCCACCCTGGACTTCATCAATGTCCCAGAGGGGATGGTTCTCAAAGCCGAGGACATCCAGAcagtctctccttcctccttgtCTTCCCCCTCAACATTCTCCCCCACCTCCCTTTCCTCCCTGGTTCTgactcaaaatggctgcctctccGACACCCTCACCCTTCCGGTCTCTATGTCCTCTCCGGGTGTGGTCATCTCCAGCCCTGTAGTGGGCCTCCCCAGCCAGCAGGGGGAGTATGTGGTGTTTGCCACGGCTGGTTCTCAGCTCACCCCCTCCAGCTCCATCTGCCAGGTGGTGTCCTCCTACAGCTACTCCACCCCACAGGTATTCTCCCTGCCTCAGGTGGTGCCCTCCATCCAGGGTGTCCCCGTATCCcaactggtccaacacacacctGGAGGCCAGGTGTCCCAGTGTCCCCAGTTAATCCCGGTGtcccccctcacctcctctctcccccagggCACCCTCTCCCAGTTCCAGGCCCACCAGACTCTGAACATTGCCCCCCGCCTCGCCCAACCCCTCCCCCAGCATCATACTAGTTCCTCTACGTTGGGAGAGGGAACCACCATCCTCTCCCTTTCCCAGCTCCCCAACGGACAGCTCCCCCAGGGACTCACACTCCAGCTGGGTGAACAGACCTCAGCTACCATCCCCACTCTGACCCAGATCCAGTCCCCACTAGGCCATCACCAGATCATCTCTCAGTCCAAAGAGACAATCCCAGGCCAGTTGGTTCCCCTCTCCCTGCCCCAGCTGGTGCCTGTCTCCTCCACGGGACAACTCTCCTTCCCTCAGGTGGGCCCGTCCACCCCTTCTCTATCTGGATCTGGTGGAGCCTTCCAGATCCTAACCTCGGCCCCTGGAGGTGGGATGACTCAGGGGCCCTTCAGGATAAACCAGCTGGGACCCCTCCAGACTGTAGTCCCCCCGACCAGCATGGCTCCTGGTGTCCAGCTCCTCAACTCCGGGGTCATTCAGCTCCCCTCCGCCTCGCCAGgGAATCTCCTCTATGGTGGAAGCCCCATCCTGAGTTACCAGAACggcaagctgatcctaactaTCCCAGCTGGCATCCAGTTCGGCAGCCTGCCCATGAAACCCGTCCCTGAGGCTTCTAACCACCACACCAACGGAGTAGGCCCTGGACTCACCCTCAACCCTGTAATCCAACCTACACCTACCCTCCTCCCAGTCTCCACCTCCGTCCCAACGTCCAACACCCTCCAGACATCCCCCCTCTGCTTCATCAACTCCTCTCCGCTCTACTGCAATCCTGAGATGGGTGTCCCCACCAACCAGCCCCACTCCACCACCTCCCCACACACCCTGGACCTCTCTGCCACCCACACCCCTCCCAATGCCCTCACCCCAGAGAGCATGCTCTCCCTCAGCCCCATGTGCAGTGGAGTGACCCCCACCACTCAGCTCTCCCACACCACCTGGagccctgtccccctctccacctctgccAGCCTGACTATGTTTGACGTCCGTGGGAAGGGAGATCTGCCCGAGGACCCGCCTCTGCTGGACCTACCTGGAGGCGAGGCCCTGCTACTAGGCAGCACCTCTCCAGAACAGGATGTGGACAGGGGGTCGCCGTTGGGGGACCCAGTGGAGATGGATGGAGACCCCAAGATCCTCACCCAGCTACAATCAGTCCCTGTGGATGATGGGTTGGGGCTGTAATCCAGTCCCCCAGCCCACACCACCACAAACTGTTATAGAACAATCTGGAAGGTTTTGTTTGTCTGACCTCAGTGCTCCCCTGGCTAGGTTTGCATTGAGGAGTGGACAGGCTTTGACTCGTAAGAGAAAGGTGCTTTGACTAAATAAATCCTCTGCCGATGATCCTTTGGATAAACCGTCATGGGATAGGCTGATTGTATGCAACGCGGAATGACCTGGAGGATGGCCTTTCATACAGGCTAGCCTATTCCCTGATTTGTGTTACTCAACTGTCCACTGCTTAGTCTCCACAATTTAAGCACTCATCTGCCTTCCATAAGCCCAGAGCCCTTCCTGTGTCCAGTCAGAGCACAACGTTTATTTGTAAGGACATTCTGCTACTTTTGTGCACAGACGTGCGTTTCAGCCAAGACTATTTGTACTACAAGGGAATGAATGCCTTGGGTTTTATATGTGGTGTTGGTTGAGCAGTATGCCACGGCCAGGCTCTGTCTTAAGTCTCTAAACACAGTCAAATGCAGACACAGACGAGCGTTCAGTCCTGTTGAGTTGGTGGTTCTGCATGGCTGGCTGCTCACTCTAGTGTTGGTGTAGTTTTGAGTGCTGCCGAGTATTGCACGGTTTGGCCTCGGTGAAGGCTACAGAGAGTGGACTGACAGTGGCACCAGAGACCCCGGACTTCTAGCTTTGAGATGGACTGTGTACCCCTCTCTGTCAAAACTGGTCACCAGTGTCACCGCATCAAGGGCGCCGGCTCATCATTTAACTACATGTTGGTATAAATGCTAAGCGCTATCGCATCTGAGGTATGTAGGAGGAAATGGGAGTCCCCTGagatttctttttttattttttatttttttactctaTGCAATCAATGCATGTTCCTCGTGTAAATATGACCATGTGACACAGATATGACATGTATTACAAGCAGTATGTAAGCAAGTCTAATTGGGATAGACCAAGCTTTTATTAACGACAAGCCTTTTTATACACTA
>TU2340276
AACAATCCGAGAATAGCACGGAGGAGTCTACCCAAGAGGCCGCTCTGGTAAAAGAGGAGACGGATCCGGATGAAGTTTCAGAACAATTGCTAAAAACTTTCCAGAACTCGGCGCTCAGCTTTTCGACAGATCAAGTAGCATGTCTGTGCGAAGCCCTTCTACAGGCGGGCAATGTGGATCGCCTGTGGAGATTCCTATCAACCATCCCTCCTTCGGCCGAGCTGCTACGTGGCAACGAGACGCTGCTCAAGGCCCAGGCACTAGTCGCTTTCCACCGGGAAGAATTCAAGGAGCTGTACGCAATATTGGAAAGCCACGACTTCCACCCCAGCAACCATGGGTTCCTGCAGGACCTCTACTTGCAGGCGCGCTACAAGGAGGCGGAGAGGTCCCGAGGTCGTAGCCTGGGCGCCGTGGACAAGTATCGGCTTCGGAAGAAGTTTCCCCTGCCGAAAACAATCTGGGATGGAGAGGAGACTGTGTATTGTTTCAAAGAGAAGTCTCGCAATGCACTGAAAGAGTGTTACAAAGGCAACAGGTATCCCACTCCAGACGAGAAGAAAAACTTGGCCAAAGTGACTGGACTCTCCCTCACGCAAGTTAGCAATTGGTTCAAGAACCGACGGCAGAGAGACCGAACCCCGTCCGGTACCAACAGCAAAAGTGAGTCCGATGGTAACCACAGCACAGACGATGAGGGTGATGACATCTCAGACAAACCAGAGGACATTGTGGGCTCCAcagcctccatctccctctctggcACCCCCTGCAGCACTGGAGGCCAGCTCTTCCTCAACGGGGCAGGTGGGTTCCTCACCGCCTCCCACCCCTTACTCATCAACGGGGGCTCCCTGATCTCCGGGGCAGGGGGTGGCGTCATCATCAACGGGCTGACCCTGAGCGATGGTCACACGGTTACCCTCAGCCCCATATCGGCTAACTCACCTCTGCTCTTCAATGGAGCGCAGGTCATATCCAAGAGCAGTGAGGATATGGGTCTTGAGGGCCAGGGGGTTATGGCCATGGAGGCCCAGCCCAGCTctgccatctccctccctctgacAGAGGATCTTAAGACGGACAATGTAAGCCTGACGAACCCCTCAACCATCCCCACCCTGGACTTCATCAATGTCCCAGAGGGGATGGTTCTCAAAGCCGAGGACATCCAGAcagtctctccttcctccttgtCTTCCCCCTCAACATTCTCCCCCACCTCCCTTTCCTCCCTGGTTCTgactcaaaatggctgcctctccGACACCCTCACCCTTCCGGTCTCTATGTCCTCTCCGGGTGTGGTCATCTCCAGCCCTGTAGTGGGCCTCCCCAGCCAGCAGGGGGAGTATGTGGTGTTTGCCACGGCTGGTTCTCAGCTCACCCCCTCCAGCTCCATCTGCCAGGTGGTGTCCTCCTACAGCTACTCCACCCCACAGGTATTCTCCCTGCCTCAGGTGGTGCCCTCCATCCAGGGTGTCCCCGTATCCcaactggtccaacacacacctGGAGGCCAGGTGTCCCAGTGTCCCCAGTTAATCCCGGTGtcccccctcac

Function

NR:

description
homeobox protein SIX5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587394.2 False 4163 mRNA 0.54 3 6228113 6235871
TU2340276 True 1564 TUCP 0.57 2 6232615 6235522

Neighbor

gene id symbol gene type direction distance location
LOC110507409 LOC106612510 coding downstream 3589 6222927 ~ 6224524 (-)
LOC110507406 map3k10 coding downstream 123104 6068424 ~ 6105009 (-)
c27h19orf54 clg01h19orf54 coding downstream 429621 5795135 ~ 5798492 (-)
LOC118944669 gfm1 coding downstream 461281 5759611 ~ 5766832 (-)
LOC110507390 LOC106612480 coding downstream 493748 5720390 ~ 5734365 (-)
LOC110507423 NA coding upstream 95406 6331277 ~ 6334277 (-)
LOC110507420 mrpl28 coding upstream 113273 6349144 ~ 6351899 (-)
trnastop-uca-4 NA coding upstream 116452 6352323 ~ 6352409 (-)
LOC110507422 LOC106612386 coding upstream 122302 6358173 ~ 6363321 (-)
LOC110507413 ppp1r37 coding upstream 131172 6367043 ~ 6419712 (-)
G2045869 NA non-coding downstream 2224 6225187 ~ 6225889 (-)
G2045715 NA non-coding downstream 161585 6062148 ~ 6066528 (-)
G2045725 NA non-coding downstream 266125 5961458 ~ 5961988 (-)
G2045723 NA non-coding downstream 274115 5953685 ~ 5953998 (-)
G2045719 NA non-coding downstream 278296 5949564 ~ 5949817 (-)
G2045879 NA non-coding upstream 9134 6245005 ~ 6246876 (-)
G2045878 NA non-coding upstream 27286 6263157 ~ 6265208 (-)
G2046000 NA non-coding upstream 260389 6496260 ~ 6496468 (-)
G2046009 NA non-coding upstream 282604 6518475 ~ 6518688 (-)
G2045223 LOC106612485 other downstream 357974 5868575 ~ 5870139 (-)
kmt2a kmt2a other downstream 686480 5531877 ~ 5586139 (-)
G2043518 NA other downstream 1813690 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1848684 4378934 ~ 4379429 (-)
G2043460 NA other downstream 1879704 4343599 ~ 4348409 (-)
LOC110507421 gemin7 other upstream 253851 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 266544 6501784 ~ 6512110 (-)
LOC110507058 egln2 other upstream 756512 6992367 ~ 7028249 (-)
LOC110507059 dscaml1 other upstream 946214 7182085 ~ 7411701 (-)
fxyd6 fxyd6 other upstream 1206802 7442657 ~ 7468560 (-)

Expression


Co-expression Network