LOC110507411 (tbcb)


Basic Information

Item Value
gene id LOC110507411
gene name tbcb
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6240480 ~ 6246883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471122.2
ACTTCCAGAACTGGGCGTAGCAGGATCTGTGACGTCGTTGAGGGAAACAAAACAACCACCCGGTTCACTGAGATAATACAGCACATGGTACCTGAATTGATTTAATCAAAAAACACCCAGTGAACTGATAGTagaaatttgtttacagagaTCGCCAAGAAAAGCGCAAAAgaacatgtaaatatttgtgaGGGACCAAGCTGGAACTGGAAGGACTCACGTTAGCTAAGTTTGTGTAACTTGCTGAGTGCGTGCTACTAACGTTGCTATTTCAAAACTTTAACTAGTTGTGTGCTatttaatcgggtaacaatgCTAACTAGCTGTTGTATTTGATGTGAAGTGGTCTTTGTTGCCTGAGTAAATTAAACGCCAGCGAAACTAAAGCTTGAAAATGGACAATGGCGTGACTGATCACCAATCCCACGGTATCGGTGCGTTTGACCTGTACCATCATTTCGTTCGAGGGGAATAAACGATACAATAGGGGAAACACCATCGCTAAATTCAAGGGTAAATTGGAGATGCTTGTGGGTACCCCGGCCTCCAGTATGGAACTGCAACTTTTCTTCACCACCACCGACAAATTCATGCAGAAGCTGGAAGACAACCAGGCCCTGCTAGGTTCCTACCCTGTGCATGATGACTGCAAAATTAATGTATAGTAGATTTCAAGCCAGGTCATTGGGTGGGAGTGAAGTATAATGAGCCTCTTGGGAAACATGCCGGGCAGTGTGAAGGAGAAGTGATACTTTGAACGTACGTTGCGTTTGTCAGGCCCCGCACAAAGACCGTGGGGCACTTCCTAGAGGAAGACTTTCATCTGGACGAGATGTAGGACTGTGATGCTGTCACCCTGTCAAAGGGTGTGGGCAGATGGGTTCAACATAGACCTCCAGTCTGATTACGAACCCGGGGCGAGGGACAGTGTCATTGCGATTAATaactttattttgttttgtgctgGTCAGGGAGGTATGGGTTGGACTATAGAGAGCTGCAACTGGGGAAGGATGCAGTATCACCTAGGACCGACTCTAGCGTATGACATCTCttgtggcacagcggtctaaggcactgcatctccgtgctAGAGACGTCGTGACAGACGTCCctagcaaaaaaaaataaaagtggaATTTACTGTATATTGAATGAGGAGAGATGAGAAAAGCACAATGTTTTTGCATTGTTACAAATACATTGTCGCTGTATTTAATGTAAATGTCCTTTTATTCGGTGGATGTAGAAAGCAAGCGTTTCTAAATTGATGTCCTCTGAATTTTGAGTTGAACCTGAATTGCCCATCACATCCTAGATTCTATATGAATAATAGGCAGTCATAAAAATCACAACAATGTTCATCAAATGTCAATTATCATCCCAAGCCAGGGTTCTATCGAACTTTCTCAAATAAATCCCATGCTTTTGAATGCAAGAATTCAAGCAACAACAACATATATATTTGTTCTTCTGACTAGTGGCAAAATGTTCAGTTTATTTGAATATGTTAGTTCATTGGTTATTGTACCATAGAagctgtttgtttttgtgtgtcgTGTCCCTGTTTTAGATTCTGGAAACTTACACTGCTTCTAACACCCtaccacaaccgcaaggctctccagaggatcgtgcggtctgtacaacgcatcactgggggcaaactacctgccctccaggacacctacagcacccaatgtcacaggaaggccaaaaagataatcaaggacaacaaccacccgagccactgcctgttcaccccgccaccatccagaaggcaaggtcagtacaggtgcatcagctGGGACCGACTGGGGAAAAAcagctatctcaaggccatcacagactgttaaacaaccaaCACAGctactgcctacatacagacttgaaatcattggccactttaataaatggatcactagttactttaataatgccactttaataatgtttatatcTTACAtactcttctcatatgtatatactgtattttatacaatGTATTGCATCTTGCCTGTGACGCgtggtcattgctcatccatatatttatacgtACATaatcttattccatccctttagatttgtgtgtattaggtcattattttgtatttgttatatattactgcactgtcggaactagaagcacaagcatttcgctacacttgcattaacatctgctaaccatgtgtatgtgaccaataagatttgattagAATGTCGAAACATCAGTTGTGCACATTGACAGCATACAGTTCAAACCGGCTGCCCAGGTGGTGACAATGCACTTTTCATGTAGATATCACGTCTTGTCTGAGCTTCATTGTACTAATCCTCATCGCCACTTCTAACAGTTTGACTCATGAACGCATGTGATCTGTCATTTGTTGTGTCACTCCTGATTCAGTGAGTTTCAGAAGAGAAAATGTGGATACAAAAGCAATTGATTAATTCGTTCCTTTTTTATTGAATTGTATTTTTCCCAAGATGTTGTCAGCAGCTAACATGCCCAGAGTTGGCAAATCTTGTACATCTGTTTTTATGAAATCTCAAAGGTGTTGATGTGCCAAAGTGTAATGGTATCTTATGCATAATAAAACAAAGTATTACCAGCAAA
>TU2339761
GGAAACAAAACAACCACCCGGTTCACTGAGATAATACAGCACATGGTACCTGAATTGATTTAATCAAAAAACACCCAGTGAACTGATAGTagaaatttgtttacagagaTCGCCAAGAAAAGCGCAAAAgaacatgtaaatatttgtgaGGGACCAAGCTGGAACTGGAAGGACTCACGTTAGCTAAGTTTGTGTAACTTGCTGAGTGCGTGCTACTAACGTTGCTATTTCAAAACTTTAACTAGTTGTGTGCTatttaatcgggtaacaatgCTAACTAGCTGTTGTATTTGATGTGAAGTGGTCTTTGTTGCCTGAGTAAATTAAACGCCAGCGAAACTAAAGCTTGAAAATGGACAATGGCGTGACTGATCACCAATCCCACGGTATCGGTGCGTTTGACCTGTACCATCATTTCGTTCGAGGGGAATAAACGATACAATAGGGGAAACACCATCGCTAAATTCAAGGGTAAATTGGAGATGCTTGTGGGTACCCCGGCCTCCAGTATGGAACTGCAACTTTTCTTCACCACCACCGACAAATTCATGCAGAAGCTGGAAGACAACCAGGCCCTGCTAGGTTCCTACCCTGTGCATGATGACTGCAAAATTAATGTATAGTAGATTTCAAGCCAGGTCATTGGGTGGGAGTGAAGTATAATGAGCCTCTTGGGAAACATGCCGGGCAGTGTGAAGGAGAAGTGATACTTTGAACGTACGTTGCGTTTGTCAGGCCCCGCACAAAGACCGTGGGGCACTTCCTAGAGGAAGACTTTCATCTGGACGAGATGTAGGACTGTGATGCTGTCACCCTGTCAAAGGGTGTGGGCAGATGGGTTCAACATAGACCTCCAGTCTGATTACGAACCCGGGGCGAGGGACAGTGTCATTGCGATTAATaactttattttgttttgtgctgGTCAGGGAGGTATGGGTTGGACTATAGAGAGCTGCAACTGGGGAAGGATGCAGTATCACCTAGGACCGACTCTAGCGTATGACATCTCttgtggcacagcggtctaaggcactgcatctccgtgctAGAGACGTCGTGACAGACGTCCctagcaaaaaaaaataaaagtggaATTTACTGTATATTGAATGAGGAGAGATGAGAAAAGCACAATGTTTTTGCATTGTTACAAATACATTGTCGCTGTATTTAATGTAAATGTCCTTTTATTCGGTGGATGTAGAAAGCAAGCGTTTCTAAATTGATGTCCTCTGAATTTTGAGTTGAACCTGAATTGCCCATCACATCCTAGATTCTATATGAATAATAGGCAGTCATAAAAATCACAACAATGTTCATCAAATGTCAATTATCATCCCAAGCCAGGGTTCTATCGAACTTTCTCAAATAAATCCCATGCTTTTGAATGCAAGAATTCAAGCAACAACAACATATATATTTGTTCTTCTGACTAGTGGCAAAATGTTCAGTTTATTTGAATATGTTAGTTCATTGGTTATTGTACCATAGAagctgtttgtttttgtgtgtcgTGTCCCTGTTTTAGATTCTGGAAACTTACACTGCTTCTAACACCCtaccacaaccgcaaggctctccagaggatcgtgcggtctgtacaacgcatcactgggggcaaactacctgccctccaggacacctacagcacccaatgtcacaggaaggccaaaaagataatcaaggacaacaaccacccgagccactgcctgttcaccccgccaccatccagaaggcaaggtcagtacaggtgcatcagctGGGACCGACTGGGGAAAAAcagctatctcaaggccatcacagactgttaaacaaccaaCACAGctactgcctacatacagacttgaaatcattggccactttaataaatggatcactagttactttaataatgccactttaataatgtttatatcTTACAtactcttctcatatgtatatactgtattttatacaatGTATTGCATCTTGCCTGTGACGCgtggtcattgctcatccatatatttatacgtACATaatcttattccatccctttagatttgtgtgtattaggtcattattttgtatttgttatatattactgcactgtcggaactagaagcacaagcatttcgctacacttgcattaacatctgctaaccatgtgtatgtgaccaataagatttgattagAATGTCGAAACATCAGTTGTGCACATTGACAGCATACAGTTCAAACCGGCTGCCCAGGTGGTGACAATGCACTTTTCATGTAGATATCACGTCTTGTCTGAGCTTCATTGTACTAATCCTCATCGCCACTTCTAACAGTTTGACTCATGAACGCATGTGATCTGTCATTTGTTGTGTCACTCCTGATTCAGTGAGTTTCAGAAGAGAAAATGTGGATACAAAAGCAATTGATTAATTCGTTCCTTTTTTATTGAATTGTATTTTTCCCAAGATGTTGTCAGCAGCTAACATGCCCAGAGTTGGCAAATCTTGTACATCTGTTTTTATGAAATCTCAAAGGTGTTGATGTGCCAAAGTGTAATGGTATCTTATGCATAATAAAACAAAGTATTACCAGC

Function

symbol description
tbcb Orthologous to human TBCB (tubulin folding cofactor B).

NR:

description
tubulin-folding cofactor B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471122.2 False 2617 mRNA 0.42 4 6240480 6246883
TU2339761 True 2572 lncRNA 0.42 4 6240522 6246880

Neighbor

gene id symbol gene type direction distance location
qpctla LOC105011981 coding upstream 17458 6217939 ~ 6223022 (+)
LOC110507407 sipa1l3 coding upstream 32913 6112520 ~ 6207567 (+)
LOC110507405 LOC106612492 coding upstream 175410 6028163 ~ 6065070 (+)
LOC110507404 cssa09h19orf47 coding upstream 219243 6012401 ~ 6021237 (+)
LOC110507403 fosb coding upstream 233096 6002715 ~ 6007384 (+)
LOC110507412 clptm1 coding downstream 732 6247615 ~ 6265219 (+)
LOC110507416 NA coding downstream 48955 6295838 ~ 6324480 (+)
LOC110507414 relb coding downstream 87449 6334332 ~ 6341809 (+)
LOC110507417 NA coding downstream 282872 6529755 ~ 6569243 (+)
calm3a LOC107670363 coding downstream 329546 6576429 ~ 6592527 (+)
G2045391 NA non-coding upstream 14390 6225188 ~ 6226090 (+)
G2045277 NA non-coding upstream 228588 6007974 ~ 6011892 (+)
LOC110507399 LOC106612489 non-coding upstream 285036 5930768 ~ 5957003 (+)
G2045273 NA non-coding upstream 287434 5951704 ~ 5953046 (+)
G2045272 NA non-coding upstream 289128 5951051 ~ 5951352 (+)
G2045453 NA non-coding downstream 102963 6349846 ~ 6350342 (+)
G2045506 NA non-coding downstream 205149 6452032 ~ 6452234 (+)
G2045520 NA non-coding downstream 245211 6492094 ~ 6492423 (+)
G2045525 NA non-coding downstream 251446 6498329 ~ 6498532 (+)
G2045540 NA non-coding downstream 273716 6520599 ~ 6520820 (+)
LOC110507398 znf296 other upstream 333241 5897208 ~ 5910058 (+)
LOC110507397 sfr16 other upstream 344367 5874691 ~ 5896127 (+)
LOC110507374 spa17 other upstream 1547608 4685868 ~ 4692872 (+)
G2043193 NA other upstream 1834354 4405458 ~ 4406126 (+)
G2040882 NA other upstream 3401553 2834096 ~ 2838927 (+)
G2045522 NA other downstream 247950 6494833 ~ 6495134 (+)
G2045655 NA other downstream 445661 6692544 ~ 6693044 (+)
G2045665 NA other downstream 472881 6719764 ~ 6720692 (+)
G2046345 NA other downstream 998923 7245806 ~ 7251575 (+)
G2046384 LOC106612398 other downstream 1009748 7256631 ~ 7258230 (+)

Expression


Co-expression Network