LOC110507423


Basic Information

Item Value
gene id LOC110507423
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6331277 ~ 6334277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471123.2
AGTTGGGGAAACCCCCCAGGGGCAGTGTTGTGCTGGCTGTAGCCATGTACAAACGTCAAATAACGGCTCATTCCATCACCTATATTTAGCAAACTACTGTAGCACAATAGCCGCCAGTGCAATGTCTCGAGTGGGATTATTGTTTTTatctaatacatttgcaaacatttctaaaaacctgttttaaacTTTGACATATGGCTGCTACTAAAGGGGTAGATAGTTCAATAGTAATATCCTCTAAAACGCTCCGGTGACAAACAAACTCTGCTGCCCTGTTTCCAATCGTCCACATGgctgggagaacctattcaaATACCTTGTAACTGGAGATTCCTTCAAAACGATTGCCTACAGTTAATGTGTAGGGCACAGCAAGGTTGGGTGACTAGGGCCATCTGGGACTGCCTGCTGGAGGAATTCAGGTGTGTGAAGGAGCAATTCAGGTGTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGAGGATATACACAAGGACCAGGAGGGGATCTGCAGCTCCCCGCCGTGTGCCAGAGGAAAAGTCTGCTGCTCTGCAGGATGTTTTAAGGATGGGGTCCAACAATACAGCAAGAGAGGCAATCTGTGTGCGGGAGATCTTCACCTCCTACTTCTTTCGAAGagggtgctgttccctggcaacaccatagactacactatgcacaaccaaaggctcttttaagagccattcacattgcaataagagtattcttccatttacttagctatgtcaactgcagttattcaattcccagtttctctccctttgatttctacttctcaggtgaggatgctgtttaggtaagggtgtgatgtttgtacaaaaacaaaacaggctaTTTTAAATCACCCATATTGAAAAAATGTAGAACAATTAGACACCCTATaacccacacctacacactcatgtatcaatctgattgatggattATGTTGTGCAGTAAGAAGGCTCAGGTGTATAACTGtggctccttccaccttcaaagAATAGGCAAGAGTGCCAACTATGGAGAATAATAAGACACTTAATTATTTCTATAACTACGCTATATTGTTTGTTCTTGTGTTTCCGTTCATGtgtttcagcataaagtactctccagccacttagtgtggtgtggacaccaggttatatcagctgtgtcggtgaacacctcccgcatctgaactggctacatagagggcacttggtcaggtcaacaagaagtattattaaagagatgtttTACATTgagatacagatagagatgtagttgtcccagagttaatgatccaagatatgttttgatgtgagagaggatgccaacTCCCAGTCCCATCATCACCACCTCAtccgctcttaagataaccttcgggccgACTAGAGACACTTAtgcaattgtgatgaactgagagaatatttggGTAGCAATGATTCATTaatcttacctctttccctttgtcttttacacctctcaccacctctttcttcctctgttttaTAATGTACAACAGATGtacattgaagtacagattgaacttgcatttataatattacaaatatatttatgcatgtatttataacacttggATAATTAACTTCTTTCAATATAGTGtcacattctctactggttgaaattaaatctctcatttgatgaaatactacacctatcctgtgttcatcagatcaatgcagatgaagggcATTAGATATCGAGATGAACCGGTTTTAGAGTATTTACATGATGCCTaggaagtgtagtgtactgtttcttaaattatatttctgtatgaattatatatgaattacaaatcagcatttaactagttaaatcctgtttctagtctattagttacaatgtgtaaccatTGATGCCACAGGACCAAGATTGGTAAACACTGtagaagtgtataattgtaatacatacatgcagacacagtgtcattcaaagactggaatttgatactcctggtattggatatgactg
>XR_002471124.2
AGTTGGGGAAACCCCCCAGGGGCAGTGTTGTGCTGGCTGTAGCCATGTACAAACGTCAAATAACGGCTCATTCCATCACCTATATTTAGCAAACTACTGTAGCACAATAGCCGCCAGTGCAATGTCTCGAGTGGGATTATTGTTTTTatctaatacatttgcaaacatttctaaaaacctgttttaaacTTTGACATATGGCTGCTACTAAAGGGGTAGATAGTTCAATAGTAATATCCTCTAAAACGCTCCGGTGACAAACAAACTCTGCTGCCCTGTTTCCAATCGTCCACATGgctgggagaacctattcaaATACCTTGTAACTGGAGATTCCTTCAAAACGATTGCCTACAGTTAATGTGTAGGGCACAGCAAGGTTGGGTGACTAGGGCCATCTGGGACTGCCTGCTGGAGGAATTCAGGTGTGTGAAGGAGCAATTCAGGTGTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGAGGATATACACAAGGACCAGGAGGGGATCTGCAGCTCCCCGCCGTGTGCCAGAGGAAAAGTCTGCTGCTCTGCAGGATGTTTTAAGGATGGGGTCCAACAATACAGCAAGAGAGGCAATCTGTGTGCGGGAGATCTTCACCTCCTACTTCTTTCGAAGagggtgctgttccctggcaacaccatagactacactatgcacaaccaaaggctcttttaagagccattcacattgcaataagagtattcttccatttacttagctatgtcaactgcagttattcaattcccagtttctctccctttgatttctacttctcaggtgaggatgctgtttaggtaagggtgtgatgtttgtacaaaaacaaaacaggctaTTTTAAATCACCCATATTGAAAAAATGTAGAACAATTAGACACCCTATaacccacacctacacactcatgtatcaatctgattgatggattATGTTGTGCAGTAAGAAGGCTCAGGTGTATAACTGtggctccttccaccttcaaagAATAGGCAAGAGTGCCAACTATGGAGAATAATAAGACACTTAATTATTTCTATAACTACGCTATATTGTTTGTTCTTGTGTTTCCGTTCATGtgtttcagcataaagtactctccagccacttagtgtggtgtggacaccaggttatatcagctgtgtcggtgaacacctcccgcatctgaactggctacatagagggcacttggtcagatatgttttgatgtgagagaggatgccaacTCCCAGTCCCATCATCACCACCTCAtccgctcttaagataaccttcgggccgACTAGAGACACTTAtgcaattgtgatgaactgagagaatatttggGTAGCAATGATTCATTaatcttacctctttccctttgtcttttacacctctcaccacctctttcttcctctgttttaTAATGTACAACAGATGtacattgaagtacagattgaacttgcatttataatattacaaatatatttatgcatgtatttataacacttggATAATTAACTTCTTTCAATATAGTGtcacattctctactggttgaaattaaatctctcatttgatgaaatactacacctatcctgtgttcatcagatcaatgcagatgaagggcATTAGATATCGAGATGAACCGGTTTTAGAGTATTTACATGATGCCTaggaagtgtagtgtactgtttcttaaattatatttctgtatgaattatatatgaattacaaatcagcatttaactagttaaatcctgtttctagtctattagttacaatgtgtaaccatTGATGCCACAGGACCAAGATTGGTAAACACTGtagaagtgtataattgtaatacatacatgcagacacagtgtcattcaaagactggaatttgatactcctggtattggatatgactg
>XR_005039967.1
CATCACCAGTTGGGGAAACCCCCCAGGGGCAGTGTTGTGCTGGCTGTAGCCATGTACAAACGTCAAATAACGGCTCATTCCATCACCTATATTTAGCAAACTACTGTAGCACAATAGCCGCCAGTGCAATGTCTCGAGTGGGATTATTGTTTTTatctaatacatttgcaaacatttctaaaaacctgttttaaacTTTGACATATGGCTGCTACTAAAGGGGTAGATAGTTCAATAGTAATATCCTCTAAAACGCTCCGGTGACAAACAAACTCTGCTGCCCTGTTTCCAATCGTCCACATGgctgggagaacctattcaagtaaATACCTTGTAACTGGAGATTCCTTCAAAACGATTGCCTACAGTTAATGTGTAGGGCACAGCAAGGTTGGGTGACTAGGGCCATCTGGGACTGCCTGCTGGAGGAATTCAGGTGTGTGAAGGAGCAATTCAGGTGTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGAGGATATACACAAGGACCAGGAGGGGATCTGCAGCTCCCCGCCGTGTGCCAGAGGAAAAGTCTGCTGCTCTGCAGGATGTTTTAAGGATGGGGTCCAACAATACAGCAAGAGAGGCAATCTGTGTGCGGGAGATCTTCACCTCCTACTTCTTTCGAAGagggtgctgttccctggcaacaccatagactacactatgcacaaccaaaggctcttttaagagccattcacattgcaataagagtattcttccatttacttagctatgtcaactgcagttattcaattcccagtttctctccctttgatttctacttctcaggtgaggatgctgtttaggtaagggtgtgatgtttgtacaaaaacaaaacaggctaTTTTAAATCACCCATATTGAAAAAATGTAGAACAATTAGACACCCTATaacccacacctacacactcatgtatcaatctgattgatggattATGTTGTGCAGTAAGAAGGCTCAGGTGTATAACTGtggctccttccaccttcaaagAATAGGCAAGAGTGCCAACTATGGAGAATAATAAGACACTTAATTATTTCTATAACTACGCTATATTGTTTGTTCTTGTGTTTCCGTTCATGtgtttcagcataaagtactctccagccacttagtgtggtgtggacaccaggttatatcagctgtgtcggtgaacacctcccgcatctgaactggctacatagagggcacttggtcaggtcaacaagaagtattattaaagagatgtttTACATTgagatacagatagagatgtagttgtcccagagttaatgatccaagatatgttttgatgtgagagaggatgccaacTCCCAGTCCCATCATCACCACCTCAtccgctcttaagataaccttcgggccgACTAGAGACACTTAtgcaattgtgatgaactgagagaatatttggGTAGCAATGATTCATTaatcttacctctttccctttgtcttttacacctctcaccacctctttcttcctctgttttaTAATGTACAACAGATGtacattgaagtacagattgaacttgcatttataatattacaaatatatttatgcatgtatttataacacttggATAATTAACTTCTTTCAATATAGTGtcacattctctactggttgaaattaaatctctcatttgatgaaatactacacctatcctgtgttcatcagatcaatgcagatgaagggcATTAGATATCGAGATGAACCGGTTTTAGAGTATTTACATGATGCCTaggaagtgtagtgtactgtttcttaaattatatttctgtatgaattatatatgaattacaaatcagcatttaactagttaaatcctgtttctagtctattagttacaatgtgtaaccatTGATGCCACAGGACCAAGATTGGTAAACACTGtagaagtgtataattgtaatacatacatgcagacacagtgtcattcaaagactggaatttgatactcctggtattggatatgactg
>TU2340311
ATGTACAAACGTCAAATAACGGCTCATTCCATCACCTATATTTAGCAAACTACTGTAGCACAATAGCCGCCAGTGCAATGTCTCGAGTGGGATTATTGTTTTTatctaatacatttgcaaacatttctaaaaacctgttttaaacTTTGACATATGGCTGCTACTAAAGGGGTAGATAGTTCAATAGTAATATCCTCTAAAACGCTCCGGTGACAAACAAACTCTGCTGCCCTGTTTCCAATCGTCCACATGgctgggagaacctattcaaATACCTTGTAACTGGAGATTCCTTCAAAACGATTGCCTACAGTTAATGTGTAGGGCACAGCAAGGTTGGGTGACTAGGGCCATCTGGGACTGCCTGCTGGAGGAATTCAGGTGTGTGAAGGAGCAATTCAGGTGTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGAGGATATACACAAGGACCAGGAGGGGATCTGCAGCTCCCCGCCGTGTGCCAGAGGAAAAGTCTGCTGCTCTGCAGGATGTTTTAAGGATGGGGTCCAACAATACAGCAAGAGAGGCAATCTGTGTGCGGGAGATCTTCACCTCCTACTTCTTTCGAAGagggtgctgttccctggcaacaccatagactacactatgcacaaccaaaggctcttttaagagccattcacattgcaataagagtattcttccatttacttagctatgtcaactgcagttattcaattcccagtttctctccctttgatttctacttctcaggtgaggatgctgtttaggtaagggtgtgatgtttgtacaaaaacaaaacaggctaTTTTAAATCACCCATATTGAAAAAATGTAGAACAATTAGACACCCTATaacccacacctacacactcatgtatcaatctgattgatggattATGTTGTGCAGTAAGAAGGCTCAGGTGTATAACTGtggctccttccaccttcaaagAATAGGCAAGAGTGCCAACTATGGAGAATAATAAGACACTTAATTATTTCTATAACTACGCTATATTGTTTGTTCTTGTGTTTCCGTTCATGtgtttcagcataaagtactctccagccacttagtgtggtgtggacaccaggtgaggccacacacacagattcctgttgaaGACTGTCACTTTAACtaccttattttctcaataaatagtctctctccttcacttcatcgctctctcctcttctccctaaatcctctaggttatatcagctgtgtcggtgaacacctcccgcatctgaactggctacatagagggcacttggtcagatatgttttgatgtgagagaggatgccaacTCCCAGTCCCATCATCACCACCTCAtccgctcttaagataaccttcgggccgACTAGAGACACTTAtgcaattgtgatgaactgagagaatatttggGTAGCAATGATTCATTaatcttacctctttccctttgtcttttacacctctcaccacctctttcttcctctgttttaTAATGTACAACAGATGtacattgaagtacagattgaacttgcatttataatattacaaatatatttatgcatgtatttataacacttggATAATTAACTTCTTTCAATATAGTGtcacattctctactggttgaaattaaatc

Function

NR:

description
uncharacterized protein LOC100191015

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471123.2 False 1986 mRNA 0.40 4 6331277 6334270
XR_002471124.2 False 1904 mRNA 0.40 4 6331277 6334270
XR_005039967.1 False 1997 mRNA 0.40 4 6331277 6334277
TU2340311 True 1635 lncRNA 0.41 3 6331620 6334226

Neighbor

gene id symbol gene type direction distance location
LOC110507410 LOC106612495 coding downstream 95406 6228113 ~ 6235871 (-)
LOC110507409 LOC106612510 coding downstream 106753 6222927 ~ 6224524 (-)
LOC110507406 map3k10 coding downstream 226268 6068424 ~ 6105009 (-)
c27h19orf54 clg01h19orf54 coding downstream 532785 5795135 ~ 5798492 (-)
LOC118944669 gfm1 coding downstream 564445 5759611 ~ 5766832 (-)
LOC110507420 mrpl28 coding upstream 14867 6349144 ~ 6351899 (-)
trnastop-uca-4 NA coding upstream 18046 6352323 ~ 6352409 (-)
LOC110507422 LOC106612386 coding upstream 23896 6358173 ~ 6363321 (-)
LOC110507413 ppp1r37 coding upstream 32766 6367043 ~ 6419712 (-)
bmp16 LOC106612383 coding upstream 122121 6456398 ~ 6467347 (-)
G2045878 NA non-coding downstream 66069 6263157 ~ 6265208 (-)
G2045879 NA non-coding downstream 84401 6245005 ~ 6246876 (-)
G2045869 NA non-coding downstream 105388 6225187 ~ 6225889 (-)
G2045715 NA non-coding downstream 264749 6062148 ~ 6066528 (-)
G2045725 NA non-coding downstream 369289 5961458 ~ 5961988 (-)
G2046000 NA non-coding upstream 161983 6496260 ~ 6496468 (-)
G2046009 NA non-coding upstream 184198 6518475 ~ 6518688 (-)
G2046014 NA non-coding upstream 190659 6524936 ~ 6525187 (-)
G2046021 NA non-coding upstream 201029 6535306 ~ 6535568 (-)
G2046022 NA non-coding upstream 201407 6535684 ~ 6536012 (-)
G2045223 LOC106612485 other downstream 461138 5868575 ~ 5870139 (-)
kmt2a kmt2a other downstream 789644 5531877 ~ 5586139 (-)
G2043518 NA other downstream 1916854 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1951848 4378934 ~ 4379429 (-)
LOC110507421 gemin7 other upstream 155445 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 168138 6501784 ~ 6512110 (-)
LOC110507058 egln2 other upstream 658106 6992367 ~ 7028249 (-)
LOC110507059 dscaml1 other upstream 847808 7182085 ~ 7411701 (-)
fxyd6 fxyd6 other upstream 1108396 7442657 ~ 7468560 (-)

Expression


Co-expression Network