LOC110507420 (mrpl28)


Basic Information

Item Value
gene id LOC110507420
gene name mrpl28
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6349144 ~ 6351899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587406.2
CTTCAACGTATTTTTTCTTAACCAATCGATGTTCTTGTTAGGGTGAGTGGGCGGAACCATCTTTTACGGAAATGTGTGCATGTCCTTGATTATGAAGTAACGTGGAGAGGAATAAGCTTCATTTGATGGTGTAATTTGTCGCTTATCCAATTAAAAGGCGTGTGTCAACACCAGCTCAGTGACCATGCCTCTCCACAAGTACCCCCCAAAAATCTGGGAAGCCATGAAACTGAAGCAGGGGATCTATGCCCGCCTCCCCAAACACTACCTCCGCTCTCTGGAGGAGACCACGCAGCCCACCCCGGTCCACTGGAAGGCCCTGGGAATCAAGTACAGGGCCAACCCCAAAACAGGGCACAAGGAGCGGGTACAAGACGTCCCCATCCCCATCTACTACCCCCCAGAGTCCCAGGATGGCCTATGGGGAGGTGAGGGATGGATATCAGGCTTCAGATATGCCAACAATGACAAACTCTCCACCAGGCTGGAAAGAGTCTGGAAGCCACAGCTGTTCACCAGAGAGTTGTACAGTGAGATCCTCAACCACAAGTTCACCATCACCGTAACGGCTCGCGCACTAGACCTCATTGATGCTGCCTACGGCTTTGACTACTACATcctgaggACACCAAAGGAGGACCTGAACTCCAAGCTAGGAATGGACCTGAGGCGGGCCATGCTCCTGAGGCTGGCCTTTAAAGACACCCAGCTCTACCCAGAGGACCCTGCCAAGAGGGAGAACATCTACACCAAGTACAAACAGTTTGAGATCCCTGCAGAGGAGGCTGAGTGGGTTGGCCTGAGTGTGGATGAGGCTGTGGAGAAACAGAGACAACTGGAGCACAAGGAGCCGGAGCCTCTGTTCAAGAGCTgtgtggagaacctggtgaaggAGCTGGCCATCCAGAAACTCTCTGAACCACAGCTGGTGGAGAAGAAGTAAGGGTCATTTTCTGAGGAGCACTAAGGTCACTTCCTGTTGACAGTGACACTTCGTCCCATTGAAAGACACTTATTTATTCAGGTTCTATTTTTCAGCAGCACATTTGGACATATCTCCATCTGGGTTGTTACGATGTAAATATTCCCCATTCCTGTTTGATAGTGAGACTTTCCTTGATCAGTGATATCTCATTTGTCTGAGGAATAAAATATTCACATTTCTTGATTTGTTTTTATTGACAATATGATGCCTAATCTAGACTGTCATACTCCAGTTTATCCTCTAGATGGAAGTGTTTTTCAGTATCAGAATTTAAGAATGATAGAAGACAGCCAGGAGCCTCTTTTATCAAAGGTGCTTGCGCACGGAAAAATACTCTAAACCGTGCTTGTGGCAGTTTTCCCGTATTGATAAATGTTGAACTTAATGGGGAAGTGTGCGTATTGCAGGTACAGTTCATACCATATGCAGAAGATTCACATTTTCTAGTGGTTGACCAATTGTATTGCAagcaaatattgttatttttggaggaaGTGGAGGTGTTTGATTCATGTGTATTGTAATAATGGTAGGCTAATAAAAACATGTAGGTCTAATTGTAAAACGGATACATCAGGAGATCAGATAGCAGCAGGAATCCTAATATGTTTCTTTtgctttaaacatttttttttataggcCTAAATTATTGTCATGTTGCAGGACGTGTCTCTCCTTTTCAACCATGACTGGTTTATTCCTGCTACACAACAAATAGGTAGTTCCACGAAAAGGGTGCCtttttgcatccctttgatatttgaagtggaaattgtgcaccaatattgaattttaaaagcctgttattaaatgaagtgcccttttaATATAGACCGCATGGAGAAGTCAATACATCTGAATAAAAGCTTGCTAGTGTCC
>XM_021587405.2
ACTTCAACGTATTTTTTCTTAACCAATCGATGTTCTTGTTAGGGTGAGTGGGCGGAACCATCTTTTACGGAAATGTGTGCATGTCCTTGATTATGAAGTAACGTGGAGAGGAATAAGCTTCATTTGATGGTGTAATTTGTCGCTTATCCAATTAAAAGGCGTGTGTCAACACCAGCTCAGTGACCATGCCTCTCCACAAGTACCCCCCAAAAATCTGGGAAGCCATGAAACTGAAGCAGGGGATCTATGCCCGCCTCCCCAAACACTACCTCCGCTCTCTGGAGGAGACCACGCAGCCCACCCCGGTCCACTGGAAGGCCCTGGGAATCAAGTACAGGGCCAACCCCAAAACAGGGCACAAGGAGCGGGTACAAGACGTCCCCATCCCCATCTACTACCCCCCAGAGTCCCAGGATGGCCTATGGGGAGGTGAGGGATGGATATCAGGCTTCAGATATGCCAACAATGACAAACTCTCCACCAGGCTGGAAAGAGTCTGGAAGCCACAGCTGTTCACCAGAGAGTTGTACAGTGAGATCCTCAACCACAAGTTCACCATCACCGTAACGGCTCGCGCACTAGACCTCATTGATGCTGCCTACGGCTTTGACTACTACATcctgaggACACCAAAGGAGGACCTGAACTCCAAGCTAGGAATGGACCTGAGGCGGGCCATGCTCCTGAGGCTGGCCTTTAAAGACACCCAGCTCTACCCAGAGGACCCTGCCAAGAGGGAGAACATCTACACCAAGTACAAACAGCAGTTTGAGATCCCTGCAGAGGAGGCTGAGTGGGTTGGCCTGAGTGTGGATGAGGCTGTGGAGAAACAGAGACAACTGGAGCACAAGGAGCCGGAGCCTCTGTTCAAGAGCTgtgtggagaacctggtgaaggAGCTGGCCATCCAGAAACTCTCTGAACCACAGCTGGTGGAGAAGAAGTAAGGGTCATTTTCTGAGGAGCACTAAGGTCACTTCCTGTTGACAGTGACACTTCGTCCCATTGAAAGACACTTATTTATTCAGGTTCTATTTTTCAGCAGCACATTTGGACATATCTCCATCTGGGTTGTTACGATGTAAATATTCCCCATTCCTGTTTGATAGTGAGACTTTCCTTGATCAGTGATATCTCATTTGTCTGAGGAATAAAATATTCACATTTCTTGATTTGTTTTTATTGACAATATGATGCCTAATCTAGACTGTCATACTCCAGTTTATCCTCTAGATGGAAGTGTTTTTCAGTATCAGAATTTAAGAATGATAGAAGACAGCCAGGAGCCTCTTTTATCAAAGGTGCTTGCGCACGGAAAAATACTCTAAACCGTGCTTGTGGCAGTTTTCCCGTATTGATAAATGTTGAACTTAATGGGGAAGTGTGCGTATTGCAGGTACAGTTCATACCATATGCAGAAGATTCACATTTTCTAGTGGTTGACCAATTGTATTGCAagcaaatattgttatttttggaggaaGTGGAGGTGTTTGATTCATGTGTATTGTAATAATGGTAGGCTAATAAAAACATGTAGGTCTAATTGTAAAACGGATACATCAGGAGATCAGATAGCAGCAGGAATCCTAATATGTTTCTTTtgctttaaacatttttttttataggcCTAAATTATTGTCATGTTGCAGGACGTGTCTCTCCTTTTCAACCATGACTGGTTTATTCCTGCTACACAACAAATAGGTAGTTCCACGAAAAGGGTGCCtttttgcatccctttgatatttgaagtggaaattgtgcaccaatattgaattttaaaagcctgttattaaatgaagtgcccttttaATATAGACCGCATGGAGAAGTCAATACATCTGAATAAAAGCTTGCTAGTGTCC

Function

symbol description
mrpl28 Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in lens; myotome; and solid lens vesicle. Orthologous to human MRPL28 (mitochondrial ribosomal protein L28).

NR:

description
39S ribosomal protein L28, mitochondrial isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02902 RP-L28, MRPL28, rpmB; large subunit ribosomal protein L28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587406.2 False 1864 mRNA 0.45 6 6349144 6351898
XM_021587405.2 True 1868 mRNA 0.45 6 6349144 6351899

Neighbor

gene id symbol gene type direction distance location
LOC110507423 NA coding downstream 14867 6331277 ~ 6334277 (-)
LOC110507410 LOC106612495 coding downstream 113273 6228113 ~ 6235871 (-)
LOC110507409 LOC106612510 coding downstream 124620 6222927 ~ 6224524 (-)
LOC110507406 map3k10 coding downstream 244135 6068424 ~ 6105009 (-)
c27h19orf54 clg01h19orf54 coding downstream 550652 5795135 ~ 5798492 (-)
trnastop-uca-4 NA coding upstream 424 6352323 ~ 6352409 (-)
LOC110507422 LOC106612386 coding upstream 6274 6358173 ~ 6363321 (-)
LOC110507413 ppp1r37 coding upstream 15144 6367043 ~ 6419712 (-)
bmp16 LOC106612383 coding upstream 104499 6456398 ~ 6467347 (-)
LOC110507421 gemin7 coding upstream 137805 6489704 ~ 6491119 (-)
G2045878 NA non-coding downstream 83936 6263157 ~ 6265208 (-)
G2045879 NA non-coding downstream 102268 6245005 ~ 6246876 (-)
G2045869 NA non-coding downstream 123255 6225187 ~ 6225889 (-)
G2045715 NA non-coding downstream 282616 6062148 ~ 6066528 (-)
G2046000 NA non-coding upstream 144361 6496260 ~ 6496468 (-)
G2046009 NA non-coding upstream 166576 6518475 ~ 6518688 (-)
G2046014 NA non-coding upstream 173037 6524936 ~ 6525187 (-)
G2046021 NA non-coding upstream 183407 6535306 ~ 6535568 (-)
G2046022 NA non-coding upstream 183785 6535684 ~ 6536012 (-)
G2045223 LOC106612485 other downstream 479005 5868575 ~ 5870139 (-)
kmt2a kmt2a other downstream 807511 5531877 ~ 5586139 (-)
G2043518 NA other downstream 1934721 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1969715 4378934 ~ 4379429 (-)
LOC110507418 NA other upstream 150516 6501784 ~ 6512110 (-)
LOC110507058 egln2 other upstream 640484 6992367 ~ 7028249 (-)
LOC110507059 dscaml1 other upstream 830186 7182085 ~ 7411701 (-)
fxyd6 fxyd6 other upstream 1090774 7442657 ~ 7468560 (-)

Expression


Co-expression Network