trnastop-uca-4


Basic Information

Item Value
gene id trnastop-uca-4
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6352323 ~ 6352409 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnastop-uca-4
GCCCGGATGAGCCTCGGTGGTCCGAGGTGCAGGCTTCAAACCTGTAGCTGCTTAGCGGCAGAGTGGTTCAATTCCACCTTTCGGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnastop-uca-4 True 87 mRNA 0.61 1 6352323 6352409

Neighbor

gene id symbol gene type direction distance location
LOC110507420 mrpl28 coding downstream 424 6349144 ~ 6351899 (-)
LOC110507423 NA coding downstream 18046 6331277 ~ 6334277 (-)
LOC110507410 LOC106612495 coding downstream 116452 6228113 ~ 6235871 (-)
LOC110507409 LOC106612510 coding downstream 127799 6222927 ~ 6224524 (-)
LOC110507406 map3k10 coding downstream 247314 6068424 ~ 6105009 (-)
LOC110507422 LOC106612386 coding upstream 5764 6358173 ~ 6363321 (-)
LOC110507413 ppp1r37 coding upstream 14634 6367043 ~ 6419712 (-)
bmp16 LOC106612383 coding upstream 103989 6456398 ~ 6467347 (-)
LOC110507421 gemin7 coding upstream 137295 6489704 ~ 6491119 (-)
LOC110507418 NA coding upstream 149375 6501784 ~ 6512110 (-)
G2045878 NA non-coding downstream 87115 6263157 ~ 6265208 (-)
G2045879 NA non-coding downstream 105447 6245005 ~ 6246876 (-)
G2045869 NA non-coding downstream 126434 6225187 ~ 6225889 (-)
G2045715 NA non-coding downstream 285795 6062148 ~ 6066528 (-)
G2046000 NA non-coding upstream 143851 6496260 ~ 6496468 (-)
G2046009 NA non-coding upstream 166066 6518475 ~ 6518688 (-)
G2046014 NA non-coding upstream 172527 6524936 ~ 6525187 (-)
G2046021 NA non-coding upstream 182897 6535306 ~ 6535568 (-)
G2046022 NA non-coding upstream 183275 6535684 ~ 6536012 (-)
G2045223 LOC106612485 other downstream 482184 5868575 ~ 5870139 (-)
kmt2a kmt2a other downstream 810690 5531877 ~ 5586139 (-)
G2043518 NA other downstream 1937900 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1972894 4378934 ~ 4379429 (-)
LOC110507058 egln2 other upstream 639974 6992367 ~ 7028249 (-)
LOC110507059 dscaml1 other upstream 829676 7182085 ~ 7411701 (-)
fxyd6 fxyd6 other upstream 1090264 7442657 ~ 7468560 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009115 mrpl28 coding NC_007126.7 CM002899.2 17128282 ~ 17138640 (-)