LOC110507422 (LOC106612386)


Basic Information

Item Value
gene id LOC110507422
gene name LOC106612386
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6358173 ~ 6363321 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965611.1
gaggagaggagaggagaggagaggagagagcagaacagaacagaacacacaagGAAACATTTTAATTCGGCACGCAGAAGCGCGAATGTGGACGTATTACCTCGCCACCATTTACCAGGTGATTATTTGACGCTTGTGATCTACCGCGCGTCAAAGGTGAGATGGCAAGCAGGTTGGGGCTCCCCCACGGCAGTTCCCTGCACAGAGGTATGCTGGTCCTGACCTTCCTGCTCCTGCTGTGTGAGATTGTTGTCAGCCGCCTCTGTGACTCCCTAATCACCATGGTGGACGTCTTCCACACCCTCTTCATCCTCATGCACATGGCTCTTCCTCTTGGTCAACCCACCCTGGGCAGAGGCCCCCCAAAACCGccacctgcctctcctctctccacctccatcacctccaccaccactcagtCACCTGTCAAATCTCCCCCATATGCCTTAACCATCTCCTGTGTCTCCCCCATCCCTTCCAGCTCAgcttcctgtccctctcctcccctctcaaccCCTGTCCTCACCACCACCTCCCAGTTTCCCTCCAAACCTCTCACCCCTACAACGACCCATTGTTTCTCCCCTGACCACTCTGAGTCCAACCAGCTAACCTCTTATCCCCATCCCACCCTGTCTGTTCCAGCCAACCCTTTTCCCCGACGCCTCCCCCCTCAGGCCTCCCTGTGTGGCCTGTCCTACAGCGAAGCGAGGGTCCAGCCCCTGGGGGCTCTAATCTCAGCTCTCCTGCTGGCTGCCCtgtgtgtcactgtctctctGGATATCCTCAGCCACACCCTGCAGCCCCACCCTATACAGCGCCCTCTTTTGGCCACGGTGATGGGGGCTGTCAGCCTGCTCTACAACCTCCTGTTGCTGGGGCTCAGCTGGGGCAACTGGCTTGGGACCAAGACTAGAGCTGcctgggagggggaggagagatctGTCCTTGGTGTGAATGCAAAAGTCAAGGCTGAGGTCCAGACCAAAGACAGCACTGGAGTGGGTGGAGAGAATGACCTCAGTAACCTCACTACATCTCTGGATGGTGCCTTCCAAGATGGAACACTTGTACTCTGTAACCCTGGAACCTCCAGTGTCCTGAACCCTGACAGTGACTCTCAGCACCCACCCCAGACATCCCTACTCCATACCGTGGCCCCTCAAGGTCCCCTTTCAGACCACTGCcatggagcacacacacaccctgcatactcacacacactccctgcaGGCTGCAGAACTGCAGAGACACCAAACAACTTCCCAAATCCATTGGCCAGTGGCTGTCATCCAAGGTACCCCAAATCTGAGGTGTCTAAGTGTGTGGGACACAGAGATAATCAGACAGACCCCACCACAGTCTCAGCCCTAAAGTCAGAAAGCCCCACAAGGCTCAGGGTTCAACTTCCCGCCTTTCTCCCATCCCTCATCACCCTCACCCAGGCACTGCTGGGCTCCATCCTGGCCCTCACCAATGGGCTTACCCTGCTACTCCTGGGCCCAGACTGTCTGCATGGCTCTGGGGCCTGTGGCCCCTTCATCTACCTGGACCCTGGCTTCTCCATGGTGGCTGTGGTGGTGCTGCTGGCCACCGCTCTGTCCCAGGTGTGCCGTTACGGTTGGCTGCTGCTCCAGGCCGTCCCgccccaggtgtgtgtgtctgatctgGTCCGGCGAATCGCCAGTGTGCCAGGGGTGCAGGCGGTGCACGACCTCCACGTGTGGCAGCTGACAGAGAGCTGCCTGGTGGCATCTGTACATGTCCACTGCCACGCTGGGTTCCAGATACACAGGTGTGGTGATCTGATGTCGGGGGTCACCAAGGTGTTACAGAGTGTAGGTGTGAGCTGCTGTACCGTACAACCAGagttcctcctctccactccctcagcCAACGGCAACatggacaacaacaacaccaaccgCACCATCATCCATAGGGAGATTCCCCCACTGCCCTCACACCTGGCCTGTAGCCTGGCCTGTGGGAAGGGCTGTGTTGGGAGGATGTGCTGTGCTCCTCTGGAGGAAGGGTCTACAGAGCCACTGGCACCCCCTGCTGGGGAAACTGAGGAGCCTCACGTGCTGATCATAGAGAACGCCTTTCTTTGAGGGAAGGACCTTTGCCCTAGGATGTATCTCAGTAATGAAGAGTGGGCTCCTTGCCTTCTTTCCTTCATATTCATGTGATGTGAGATGTAGAGGACTGAAGGGGAGTAAACCACTTTGGGAAATTAAGATGCAGCCTGGGGAATTAATATAATAGATTATTATTGTCAGAATATTCTGAAAGACTTCATCCCCATGTCATTGAGGTAATTTTAGAGAGCTAGATAGCCTAATGTAAGAATTAGGCTCTCAGGTAAAGAGTAGAAATCACAGTAGTCattatgcttgtgtgtgtgtcttgttttgGGATGGGATATTTAACATCATTCCTATGGGTGCTCAGAAAGTGCCTGTATgtttactgtatataatgtataatCTATCCATGTAGTACATCATTATGCcggtattgtattttattgtattaacACGGTGCCATACCAAAGACACAGTGGGTTGTAAA
>XM_036965613.1
gaggagaggagaggagaggagaggagagagcagaacagaacagaacacacaagGAAACATTTTAATTCGGCACGCAGAAGCGCGAATGTGGACGTATTACCTCGCCACCATTTACCAGGTGATTATTTGACGCTTGTGATCTACCGCGCGTCAAAGGTGAGATGGCAAGCAGGTTGGGGCTCCCCCACGGCAGTTCCCTGCACAGAGCCAACCCTTTTCCCCGACGCCTCCCCCCTCAGGCCTCCCTGTGTGGCCTGTCCTACAGCGAAGCGAGGGTCCAGCCCCTGGGGGCTCTAATCTCAGCTCTCCTGCTGGCTGCCCtgtgtgtcactgtctctctGGATATCCTCAGCCACACCCTGCAGCCCCACCCTATACAGCGCCCTCTTTTGGCCACGGTGATGGGGGCTGTCAGCCTGCTCTACAACCTCCTGTTGCTGGGGCTCAGCTGGGGCAACTGGCTTGGGACCAAGACTAGAGCTGcctgggagggggaggagagatctGTCCTTGGTGTGAATGCAAAAGTCAAGGCTGAGGTCCAGACCAAAGACAGCACTGGAGTGGGTGGAGAGAATGACCTCAGTAACCTCACTACATCTCTGGATGGTGCCTTCCAAGATGGAACACTTGTACTCTGTAACCCTGGAACCTCCAGTGTCCTGAACCCTGACAGTGACTCTCAGCACCCACCCCAGACATCCCTACTCCATACCGTGGCCCCTCAAGGTCCCCTTTCAGACCACTGCcatggagcacacacacaccctgcatactcacacacactccctgcaGGCTGCAGAACTGCAGAGACACCAAACAACTTCCCAAATCCATTGGCCAGTGGCTGTCATCCAAGGTACCCCAAATCTGAGGTGTCTAAGTGTGTGGGACACAGAGATAATCAGACAGACCCCACCACAGTCTCAGCCCTAAAGTCAGAAAGCCCCACAAGGCTCAGGGTTCAACTTCCCGCCTTTCTCCCATCCCTCATCACCCTCACCCAGGCACTGCTGGGCTCCATCCTGGCCCTCACCAATGGGCTTACCCTGCTACTCCTGGGCCCAGACTGTCTGCATGGCTCTGGGGCCTGTGGCCCCTTCATCTACCTGGACCCTGGCTTCTCCATGGTGGCTGTGGTGGTGCTGCTGGCCACCGCTCTGTCCCAGGTGTGCCGTTACGGTTGGCTGCTGCTCCAGGCCGTCCCgccccaggtgtgtgtgtctgatctgGTCCGGCGAATCGCCAGTGTGCCAGGGGTGCAGGCGGTGCACGACCTCCACGTGTGGCAGCTGACAGAGAGCTGCCTGGTGGCATCTGTACATGTCCACTGCCACGCTGGGTTCCAGATACACAGGTGTGGTGATCTGATGTCGGGGGTCACCAAGGTGTTACAGAGTGTAGGTGTGAGCTGCTGTACCGTACAACCAGagttcctcctctccactccctcagcCAACGGCAACatggacaacaacaacaccaaccgCACCATCATCCATAGGGAGATTCCCCCACTGCCCTCACACCTGGCCTGTAGCCTGGCCTGTGGGAAGGGCTGTGTTGGGAGGATGTGCTGTGCTCCTCTGGAGGAAGGGTCTACAGAGCCACTGGCACCCCCTGCTGGGGAAACTGAGGAGCCTCACGTGCTGATCATAGAGAACGCCTTTCTTTGAGGGAAGGACCTTTGCCCTAGGATGTATCTCAGTAATGAAGAGTGGGCTCCTTGCCTTCTTTCCTTCATATTCATGTGATGTGAGATGTAGAGGACTGAAGGGGAGTAAACCACTTTGGGAAATTAAGATGCAGCCTGGGGAATTAATATAATAGATTATTATTGTCAGAATATTCTGAAAGACTTCATCCCCATGTCATTGAGGTAATTTTAGAGAGCTAGATAGCCTAATGTAAGAATTAGGCTCTCAGGTAAAGAGTAGAAATCACAGTAGTCattatgcttgtgtgtgtgtcttgttttgGGATGGGATATTTAACATCATTCCTATGGGTGCTCAGAAAGTGCCTGTATgtttactgtatataatgtataatCTATCCATGTAGTACATCATTATGCcggtattgtattttattgtattaacACGGTGCCATACCAAAGACACAGTGGGTTGTAAA
>XM_036965612.1
TAACCTGGGAGTTTGGTGggcgtgggagagaggagagagagagaggagagagagagagaaagaggagagagagagatgagagatgagagaggagaggagaggagaggagaggagagagcagaacagaacagaacacacaagGAAACATTTTAATTCGGCACGCAGAAGCGCGAATGTGGACGTATTACCTCGCCACCATTTACCAGGTGAGATGGCAAGCAGGTTGGGGCTCCCCCACGGCAGTTCCCTGCACAGAGCCAACCCTTTTCCCCGACGCCTCCCCCCTCAGGCCTCCCTGTGTGGCCTGTCCTACAGCGAAGCGAGGGTCCAGCCCCTGGGGGCTCTAATCTCAGCTCTCCTGCTGGCTGCCCtgtgtgtcactgtctctctGGATATCCTCAGCCACACCCTGCAGCCCCACCCTATACAGCGCCCTCTTTTGGCCACGGTGATGGGGGCTGTCAGCCTGCTCTACAACCTCCTGTTGCTGGGGCTCAGCTGGGGCAACTGGCTTGGGACCAAGACTAGAGCTGcctgggagggggaggagagatctGTCCTTGGTGTGAATGCAAAAGTCAAGGCTGAGGTCCAGACCAAAGACAGCACTGGAGTGGGTGGAGAGAATGACCTCAGTAACCTCACTACATCTCTGGATGGTGCCTTCCAAGATGGAACACTTGTACTCTGTAACCCTGGAACCTCCAGTGTCCTGAACCCTGACAGTGACTCTCAGCACCCACCCCAGACATCCCTACTCCATACCGTGGCCCCTCAAGGTCCCCTTTCAGACCACTGCcatggagcacacacacaccctgcatactcacacacactccctgcaGGCTGCAGAACTGCAGAGACACCAAACAACTTCCCAAATCCATTGGCCAGTGGCTGTCATCCAAGGTACCCCAAATCTGAGGTGTCTAAGTGTGTGGGACACAGAGATAATCAGACAGACCCCACCACAGTCTCAGCCCTAAAGTCAGAAAGCCCCACAAGGCTCAGGGTTCAACTTCCCGCCTTTCTCCCATCCCTCATCACCCTCACCCAGGCACTGCTGGGCTCCATCCTGGCCCTCACCAATGGGCTTACCCTGCTACTCCTGGGCCCAGACTGTCTGCATGGCTCTGGGGCCTGTGGCCCCTTCATCTACCTGGACCCTGGCTTCTCCATGGTGGCTGTGGTGGTGCTGCTGGCCACCGCTCTGTCCCAGGTGTGCCGTTACGGTTGGCTGCTGCTCCAGGCCGTCCCgccccaggtgtgtgtgtctgatctgGTCCGGCGAATCGCCAGTGTGCCAGGGGTGCAGGCGGTGCACGACCTCCACGTGTGGCAGCTGACAGAGAGCTGCCTGGTGGCATCTGTACATGTCCACTGCCACGCTGGGTTCCAGATACACAGGTGTGGTGATCTGATGTCGGGGGTCACCAAGGTGTTACAGAGTGTAGGTGTGAGCTGCTGTACCGTACAACCAGagttcctcctctccactccctcagcCAACGGCAACatggacaacaacaacaccaaccgCACCATCATCCATAGGGAGATTCCCCCACTGCCCTCACACCTGGCCTGTAGCCTGGCCTGTGGGAAGGGCTGTGTTGGGAGGATGTGCTGTGCTCCTCTGGAGGAAGGGTCTACAGAGCCACTGGCACCCCCTGCTGGGGAAACTGAGGAGCCTCACGTGCTGATCATAGAGAACGCCTTTCTTTGAGGGAAGGACCTTTGCCCTAGGATGTATCTCAGTAATGAAGAGTGGGCTCCTTGCCTTCTTTCCTTCATATTCATGTGATGTGAGATGTAGAGGACTGAAGGGGAGTAAACCACTTTGGGAAATTAAGATGCAGCCTGGGGAATTAATATAATAGATTATTATTGTCAGAATATTCTGAAAGACTTCATCCCCATGTCATTGAGGTAATTTTAGAGAGCTAGATAGCCTAATGTAAGAATTAGGCTCTCAGGTAAAGAGTAGAAATCACAGTAGTCattatgcttgtgtgtgtgtcttgttttgGGATGGGATATTTAACATCATTCCTATGGGTGCTCAGAAAGTGCCTGTATgtttactgtatataatgtataatCTATCCATGTAGTACATCATTATGCcggtattgtattttattgtattaacACGGTGCCATACCAAAGACACAGTGGGTTGTAAA
>XM_036965610.1
CAGCGATTATAACCTGGGAGTTTGGTGggcgtgggagagaggagagagagagaggagagagagagagaaagaggagagagagagatgagagatgagagaggagaggagaggagaggagaggagagagcagaacagaacagaacacacaagGAAACATTTTAATTCGGCACGCAGAAGCGCGAATGTGGACGTATTACCTCGCCACCATTTACCAGGTGAGATGGCAAGCAGGTTGGGGCTCCCCCACGGCAGTTCCCTGCACAGAGGTATGCTGGTCCTGACCTTCCTGCTCCTGCTGTGTGAGATTGTTGTCAGCCGCCTCTGTGACTCCCTAATCACCATGGTGGACGTCTTCCACACCCTCTTCATCCTCATGCACATGGCTCTTCCTCTTGGTCAACCCACCCTGGGCAGAGGCCCCCCAAAACCGccacctgcctctcctctctccacctccatcacctccaccaccactcagtCACCTGTCAAATCTCCCCCATATGCCTTAACCATCTCCTGTGTCTCCCCCATCCCTTCCAGCTCAgcttcctgtccctctcctcccctctcaaccCCTGTCCTCACCACCACCTCCCAGTTTCCCTCCAAACCTCTCACCCCTACAACGACCCATTGTTTCTCCCCTGACCACTCTGAGTCCAACCAGCTAACCTCTTATCCCCATCCCACCCTGTCTGTTCCAGCCAACCCTTTTCCCCGACGCCTCCCCCCTCAGGCCTCCCTGTGTGGCCTGTCCTACAGCGAAGCGAGGGTCCAGCCCCTGGGGGCTCTAATCTCAGCTCTCCTGCTGGCTGCCCtgtgtgtcactgtctctctGGATATCCTCAGCCACACCCTGCAGCCCCACCCTATACAGCGCCCTCTTTTGGCCACGGTGATGGGGGCTGTCAGCCTGCTCTACAACCTCCTGTTGCTGGGGCTCAGCTGGGGCAACTGGCTTGGGACCAAGACTAGAGCTGcctgggagggggaggagagatctGTCCTTGGTGTGAATGCAAAAGTCAAGGCTGAGGTCCAGACCAAAGACAGCACTGGAGTGGGTGGAGAGAATGACCTCAGTAACCTCACTACATCTCTGGATGGTGCCTTCCAAGATGGAACACTTGTACTCTGTAACCCTGGAACCTCCAGTGTCCTGAACCCTGACAGTGACTCTCAGCACCCACCCCAGACATCCCTACTCCATACCGTGGCCCCTCAAGGTCCCCTTTCAGACCACTGCcatggagcacacacacaccctgcatactcacacacactccctgcaGGCTGCAGAACTGCAGAGACACCAAACAACTTCCCAAATCCATTGGCCAGTGGCTGTCATCCAAGGTACCCCAAATCTGAGGTGTCTAAGTGTGTGGGACACAGAGATAATCAGACAGACCCCACCACAGTCTCAGCCCTAAAGTCAGAAAGCCCCACAAGGCTCAGGGTTCAACTTCCCGCCTTTCTCCCATCCCTCATCACCCTCACCCAGGCACTGCTGGGCTCCATCCTGGCCCTCACCAATGGGCTTACCCTGCTACTCCTGGGCCCAGACTGTCTGCATGGCTCTGGGGCCTGTGGCCCCTTCATCTACCTGGACCCTGGCTTCTCCATGGTGGCTGTGGTGGTGCTGCTGGCCACCGCTCTGTCCCAGGTGTGCCGTTACGGTTGGCTGCTGCTCCAGGCCGTCCCgccccaggtgtgtgtgtctgatctgGTCCGGCGAATCGCCAGTGTGCCAGGGGTGCAGGCGGTGCACGACCTCCACGTGTGGCAGCTGACAGAGAGCTGCCTGGTGGCATCTGTACATGTCCACTGCCACGCTGGGTTCCAGATACACAGGTGTGGTGATCTGATGTCGGGGGTCACCAAGGTGTTACAGAGTGTAGGTGTGAGCTGCTGTACCGTACAACCAGagttcctcctctccactccctcagcCAACGGCAACatggacaacaacaacaccaaccgCACCATCATCCATAGGGAGATTCCCCCACTGCCCTCACACCTGGCCTGTAGCCTGGCCTGTGGGAAGGGCTGTGTTGGGAGGATGTGCTGTGCTCCTCTGGAGGAAGGGTCTACAGAGCCACTGGCACCCCCTGCTGGGGAAACTGAGGAGCCTCACGTGCTGATCATAGAGAACGCCTTTCTTTGAGGGAAGGACCTTTGCCCTAGGATGTATCTCAGTAATGAAGAGTGGGCTCCTTGCCTTCTTTCCTTCATATTCATGTGATGTGAGATGTAGAGGACTGAAGGGGAGTAAACCACTTTGGGAAATTAAGATGCAGCCTGGGGAATTAATATAATAGATTATTATTGTCAGAATATTCTGAAAGACTTCATCCCCATGTCATTGAGGTAATTTTAGAGAGCTAGATAGCCTAATGTAAGAATTAGGCTCTCAGGTAAAGAGTAGAAATCACAGTAGTCattatgcttgtgtgtgtgtcttgttttgGGATGGGATATTTAACATCATTCCTATGGGTGCTCAGAAAGTGCCTGTATgtttactgtatataatgtataatCTATCCATGTAGTACATCATTATGCcggtattgtattttattgtattaacACGGTGCCATACCAAAGACACAGTGGGTTGTAAA

Function

NR:

description
LOW QUALITY PROTEIN: uncharacterized protein LOC110507422

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965611.1 False 2574 mRNA 0.54 5 6358173 6363224
XM_036965613.1 False 2136 mRNA 0.54 6 6358173 6363224
XM_036965612.1 False 2186 mRNA 0.54 6 6358173 6363312
XM_036965610.1 True 2633 mRNA 0.54 5 6358173 6363321

Neighbor

gene id symbol gene type direction distance location
trnastop-uca-4 NA coding downstream 5764 6352323 ~ 6352409 (-)
LOC110507420 mrpl28 coding downstream 6274 6349144 ~ 6351899 (-)
LOC110507423 NA coding downstream 23896 6331277 ~ 6334277 (-)
LOC110507410 LOC106612495 coding downstream 122302 6228113 ~ 6235871 (-)
LOC110507409 LOC106612510 coding downstream 133649 6222927 ~ 6224524 (-)
LOC110507413 ppp1r37 coding upstream 3722 6367043 ~ 6419712 (-)
bmp16 LOC106612383 coding upstream 93077 6456398 ~ 6467347 (-)
LOC110507421 gemin7 coding upstream 126383 6489704 ~ 6491119 (-)
LOC110507418 NA coding upstream 138463 6501784 ~ 6512110 (-)
ptgir ptgir coding upstream 247125 6610446 ~ 6672160 (-)
G2045878 NA non-coding downstream 92965 6263157 ~ 6265208 (-)
G2045879 NA non-coding downstream 111297 6245005 ~ 6246876 (-)
G2045869 NA non-coding downstream 132284 6225187 ~ 6225889 (-)
G2045715 NA non-coding downstream 291645 6062148 ~ 6066528 (-)
G2046000 NA non-coding upstream 132939 6496260 ~ 6496468 (-)
G2046009 NA non-coding upstream 155154 6518475 ~ 6518688 (-)
G2046014 NA non-coding upstream 161615 6524936 ~ 6525187 (-)
G2046021 NA non-coding upstream 171985 6535306 ~ 6535568 (-)
G2046022 NA non-coding upstream 172363 6535684 ~ 6536012 (-)
G2045223 LOC106612485 other downstream 488034 5868575 ~ 5870139 (-)
kmt2a kmt2a other downstream 816540 5531877 ~ 5586139 (-)
G2043518 NA other downstream 1943750 4414065 ~ 4414423 (-)
G2043483 NA other downstream 1978744 4378934 ~ 4379429 (-)
LOC110507058 egln2 other upstream 629062 6992367 ~ 7028249 (-)
LOC110507059 dscaml1 other upstream 818764 7182085 ~ 7411701 (-)
fxyd6 fxyd6 other upstream 1079352 7442657 ~ 7468560 (-)

Expression


Co-expression Network