LOC110507418


Basic Information

Item Value
gene id LOC110507418
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6501784 ~ 6512110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587403.2
TCTGGCTCTACCCTGCTACAGCGCACCTGGGCAAGTCAATCCTTTAGGAGTTCCAGTCTCTGCCCATGCTGGGAAGTTCTACGACACGTCTCCCAGAGATCACGTCTGCGGTGGGCTGAATTATGACGTTCTAGATTACACTTGCTGTGAAAGAGTACTGCATAAAGAGGCGCGGCTGTCTTGCTGTGGAAACAGGGTCTTTAACCTCACCCAGGCTTCCTGTTGTGAAGGTCAGGTGACTCTTAATGTGAGCCAGCTGGTGTCAGATTGCTGTGGGTGTCAGGCCTATGACCCACTCAACCAGCTGTGCTGTGACTCTCAGATCCTAACCAGGACCCAACCCCATTCCAAGTGTTGCGGAAAAGAGCTTTACGATGAAGACCACCAGCTCTGCTGTGGAAATGTCATTAAAGGAAAGAAGGTCCTGACCAAAATGTCCGTTCACCACCAGTGCTGTGGAGACCACCAGTTTGACCAGCGAAGCCACTGCTGCTGCTTCGATTCTGAACCACTCTCTCCAGAGCCTCTCAATGCAAGCTGCTGTGCATCATCAGGGTCGAATcaCTTGGGAATTGCTCCGACTTCTCCGAAATGTATGTCAGGGAAACAGCCCTGTGGTCTAGGTGCCTGTTTCAACCCAACAACAGAACGTTGCTGTGTGAACCCTACATCTCTCCAGGGACAAAGTTACTCCCACGACCAGACCTGCTGTGAGGGAACACTACGCCACACCCCATATCTCTACAATGGTGCTAGCTGTGGCTCTCAGGTTTACAATCCAGACAGTAAAATCTGCTGTGCCGGGAAGCTGTCCAATAGGGTGCTTGGAAAAAACCTGtgCTGTGGTACAACGCCGTATGGTGTAGAGGACCGAGGGGTGTTGTGCTGTAACCAGACCTTGCACTGTGAGGTGGAGGATGGGTACCAGTGCTCCCCAGGTGGCCACTTGTATCTGCCATCCCGTGACATGGTGTGTGGCACACGAGTTCATCTGAACGATCCAGACAAACACTGCTGTGGGGAGGAGACATACTACCCTTGGAATGAAATCTGCTGCAACGGACACAAACACAGGGGGAACAAGTCCTGCTGCGGAGTCAAGGCTTATGACCCCAGCTGTGACCAGATGAAGTGCTGTGCAGGGACTCTGTACGACCTGCAGTTTCAGGACAGACTCTCAGAGGAAGCCCAGTGCTGTGGGAGTGTCCTGATGGAGGCCGGCTCCACCCAGACCTGCTGCTCTGCCCCAGGGCTAGACCTGCTCTATCCTACCCAGCCAGGGTTCACCTGCTGTGGGCACCGCTACCCCAACTCATCCCTGTGGTCCTGCTGCGCCGGGGTCCTGCACCCAAGGCCTGAACCACACAACACCACCAAGAACGTGATTCCAGGACCCAGGCTTCTACCACTGGGGGATCTGAAGACTGAAGTCCTGTGTCAGAGCAAAGttcTGGTAGGGACAGTGGAGAGTGTGTCTGTGAAGATGAATGAGCGGTCCATCGTGATGGTGAACACCATGTACATGCAGGCCTCGCGTGGCCATGTCAGCGCCATGGCTTCCCCTCACTACCTCACATTACCCGACCACTGCAGCTCCCCTGAACTGGTGCTGGGCAACACTTACATCTGGGTGAAAAATAATTACTCAGACACCATAAGTTTCATCTCTGATCTCAGCGATCATTCCTCCCCTCTTCATTCCATCCTCTCCAGGTGCTCAAAATGATACTTTTAGCCTTGTTTTGAGGCAATACAGTGTTTTGTTCACAATTACATTGCTTACAAAAAATGTCTTTAAAACAAAACCCGtccattttgggttctgatggggtaggacagatgaactaagctcatgaggcatacgttatattcttcaagagtcCATTTGTATATAATTCATTTAAAACTCAAACAAAAATGTATGTGGATGATGACCCATTTAAGATATCAGTATATCTAAGTATATTTTTATTTGCTTACAAAAAACCCAACCATGTTTGTCTGGGTAGTGGTTTTCTGTTATATTATTGCAAATGGTCCTTTAATGTTAATGCAATATTTTCTTAATAATGTCTATTCCATACTGAAGCTATTTACTCACTGAAACCCTTTGTTCAATGTGACACTAACATCATTGGCGTGAATCTGTCTGTGAAGTGATTGCACCACATTGTGAAACGGCAGGAAATAAGCCTATTTTCTAACCAAGCaattgtgtgtaggtgtgtgactTCACCATGACCtcgtgactttttccacattgtgttacgttacagccttattctaaaatgcattcaattgtccccccccccccccccc
>TU2340423
ACGGATAACTAGAGGTCTCTTTTCTAACGCTTAGCACTGTTGGTAGAGGATGAGTGCACAGGTCCCCTGtgCTGTGGTACAACGCCGTATGGTGTAGAGGACCGAGGGGTGTTGTGCTGTAACCAGACCTTGCACTGTGAGGTGGAGGATGGGTACCAGTGCTCCCCAGGTGGCCACTTGTATCTGCCATCCCGTGACATGGTGTGTGGCACACGAGTTCATCTGAACGATCCAGACAAACACTGCTGTGGGGAGGAGACATACTACCCTTGGAATGAAATCTGCTGCAACGGACACAAACACAGGGGGAACAAGTCCTGCTGCGGAGTCAAGGCTTATGACCCCAGCTGTGACCAGATGAAGTGCTGTGCAGGGACTCTGTACGACCTGCAGTTTCAGGACAGACTCTCAGAGGAAGCCCAGTGCTGTGGGAGTGTCCTGATGGAGGCCGGCTCCACCCAGACCTGCTGCTCTGCCCCAGGGCTAGACCTGCTCTATCCTACCCAGCCAGGGTTCACCTGCTGTGGGCACCGCTACCCCAACTCATCCCTGTGGTCCTGCTGCGCCGGGGTCCTGCACCCAAGGCCTGAACCACACAACACCACCAAGAACGTGATTCCAGGACCCAGGCTTCTACCACTGGGGGATCTGAAGACTGAAGTCCTGTGTCAGAGCAAAGttcTGGTAGGGACAGTGGAGAGTGTGTCTGTGAAGATGAATGAGCGGTCCATCGTGATGGTGAACACCATGTACATGCAGGCCTCGCGTGGCCATGTCAGCGCCATGGCTTCCCCTCACTACCTCACATTACCCGACCACTGCAGCTCCCCTGAACTGGTGCTGGGCAACACTTACATCTGGGTGAAAAATAATTACTCAGACACCATAAGTTTCATCTCTGATCTCAGCGATCATTCCT
>TU2340424
GGTTATGGTCTGTTAATGTATTTTATGTGCATGTGTTGTTGTATGGCATCtaattgtgggtgtgtgtgggtgtgcactGTGCATGTGGATCCTTTGAAATTAATGTCTTCCCCTGGTAAACTGTGGAGGCAGATGCAATGACAAACAAATAGTTTAACTTTCCCAGTTTATAGACTTCCTGTATATTACCTTgctctgagctgcacttcctgcaGAGGTCCTCCCCACTCTGTCTTTTTCTCCATCTGCCTCCAGTATGTCAGGGAAACAGCCCTGTGGTCTAGGTGCCTGTTTCAACCCAACAACAGAACGTTGCTGTGTGAACCCTACATCTCTCCAGGGACAAAGTTACTCCCACGACCAGACCTGCTGTGAGGGAACACTACGCCACACCCCATATCTCTACAATGGTGCTAGCTGTGGCTCTCAGGTTTACAATCCAGACAGTAAAATCTGCTGTGCCGGGAAGCTGTCCAATAGGGTGCTTGGAAAAAACCTGtgCTGTGGTACAACGCCGTATGGTGTAGAGGACCGAGGGGTGTTGTGCTGTAACCAGACCTTGCACTGTGAGGTGGAGGATGGGTACCAGTGCTCCCCAGGTGGCCACTTGTATCTGCCATCCCGTGACATGGTGTGTGGCACACGAGTTCATCTGAACGATCCAGACAAACACTGCTGTGGGGAGGAGACATACTACCCTTGGAATGAAATCTGCTGCAACGGACACAAACACAGGGGGAACAAGTCCTGCTGCGGAGTCAAGGCTTATGACCCCAGCTGTGACCAGATGAAGTGCTGTGCAGGGACTCTGTACGACCTGCAGTTTCAGGACAGACTCTCAGAGGAAGCCCAGTGCTGTGGGAGTGTCCTGATGGAGGCCGGCTCCACCCAGACCTGCTGCTCTGCCCCAGGGCTAGACCTGCTCTATCCTACCCAGCCAGGGTTCACCTGCTGTGGGCACCGCTACCCCAACTCATCCCTGTGGTCCTGCTGCGCCGGGGTCCTGCACCCAAGGCCTGAACCACACAACACCACCAAGAACGTGATTCCAGGACCCAGGCTTCTACCACTGGGGGATCTGAAGACTGAAGTCCTGTGTCAGAGCAAAGttcTGGTAGGGACAGTGGAGAGTGTGTCTGTGAAGATGAATGAGCGGTCCATCGTGATGGTGAACACCATGTACATGCAGGCCTCGCGTGGCCATGTCAGCGCCATGGCTTCCCCTCACTACCTCACATTACCCGACCACTGCAGCTCCCCTGAACTGGTGCTGGGCAACACTTACATCTGGGTGAAAAATAATTACTCAGACACCATAAGTTTCATCTCTGATCTCAGCGATCATTCCT

Function

NR:

description
uncharacterized protein LOC110507418

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587403.2 False 2319 mRNA 0.49 12 6501784 6512110
TU2340423 False 919 TUCP 0.55 5 6502415 6505948
TU2340424 True 1349 TUCP 0.53 6 6502415 6507581

Neighbor

gene id symbol gene type direction distance location
LOC110507421 gemin7 coding downstream 10996 6489704 ~ 6491119 (-)
bmp16 LOC106612383 coding downstream 34437 6456398 ~ 6467347 (-)
LOC110507413 ppp1r37 coding downstream 82072 6367043 ~ 6419712 (-)
LOC110507422 LOC106612386 coding downstream 138463 6358173 ~ 6363321 (-)
trnastop-uca-4 NA coding downstream 149375 6352323 ~ 6352409 (-)
ptgir ptgir coding upstream 98336 6610446 ~ 6672160 (-)
LOC110507427 NA coding upstream 176411 6688521 ~ 6694030 (-)
LOC110507428 LOC106612376 coding upstream 182055 6694165 ~ 6704533 (-)
LOC118944637 NA coding upstream 245525 6757635 ~ 6760305 (-)
ap2s1 AP2S1 coding upstream 299296 6811406 ~ 6816589 (-)
G2046000 NA non-coding downstream 5316 6496260 ~ 6496468 (-)
LOC110507423 NA non-coding downstream 167558 6331277 ~ 6334277 (-)
G2045878 NA non-coding downstream 236576 6263157 ~ 6265208 (-)
G2045879 NA non-coding downstream 254908 6245005 ~ 6246876 (-)
G2045869 NA non-coding downstream 275895 6225187 ~ 6225889 (-)
G2046009 NA non-coding upstream 6365 6518475 ~ 6518688 (-)
G2046014 NA non-coding upstream 12826 6524936 ~ 6525187 (-)
G2046021 NA non-coding upstream 23196 6535306 ~ 6535568 (-)
G2046022 NA non-coding upstream 23574 6535684 ~ 6536012 (-)
G2046023 NA non-coding upstream 24727 6536837 ~ 6537093 (-)
LOC110507410 LOC106612495 other downstream 266262 6228113 ~ 6235871 (-)
G2045223 LOC106612485 other downstream 631645 5868575 ~ 5870139 (-)
kmt2a kmt2a other downstream 960151 5531877 ~ 5586139 (-)
G2043518 NA other downstream 2087361 4414065 ~ 4414423 (-)
LOC110507058 egln2 other upstream 480273 6992367 ~ 7028249 (-)
LOC110507059 dscaml1 other upstream 669975 7182085 ~ 7411701 (-)
fxyd6 fxyd6 other upstream 930563 7442657 ~ 7468560 (-)
G2046935 NA other upstream 993609 7505719 ~ 7510925 (-)
LOC110507449 LOC106580720 other upstream 1291773 7803655 ~ 7904639 (-)

Expression


Co-expression Network