ptgir (ptgir)


Basic Information

Item Value
gene id ptgir
gene name ptgir
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6610446 ~ 6672160 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587411.2
caacacaaacacacactgaacctCGGCATGCTGTCGAACGAGAGCTGTGAGAACAGCACCCATATCCACACGGACGGGAACCCGGTGGTGAGCACAGTGATGTTCATCCTGGGGGTGATGGGGAACTTCATCGCCCTGGCCATCCTAGGGGTCCACCAGAAGGAGCGACGCACCAAGtcctctgtcttctgcatcctgGTGACGGGACTGGCCCTGACTGACCTGCTGGGAACCTGCTTCCTCAGCCCCCTGGTGTTTGTGTGCTATGCTCGCCAGCGATCCCTGCTGGGGCTCACTGGGGACCAGGGACTCTGTGGCCTCTTTGCCTTTGCCATGACCTTCTTTGGCCTGGCCTCCATGCTCATCCTCTGTGCCATGGCCGTGGAGCGCTGCCTGGCCATCAGCCACCCCTATTTTTACTCCAAGTGCGTCCGACGCAGCTTCGCCAAGGTGGCCCTCCTGCTTATCTACATCTTCACCTGCGCCTTCTGTGTTTTGCCATTCTTCGGCTTTGGCCGCCACAAGCAGTACTGCCCGGGCACATGGTGCTTCATCAAGATGGAGGCGGCAGGCGAGGGGGTGGACGAAGAGAGGAAGGTTCTGGCGTTCTCTCTGTCCTACGCCTCGCTCATGGCGCTGCTGATCGTGGCAGTGTTTGTGTGCAACGGCTCTGTGATTGTCAGCCTGTGCCGGATGCACCGCAGCCAGATGACACGGCGTGGTTCGGTGGTGaacggagggaggaagaggaagatgagtCTGGGCTGGTtcggacagggggaggaggagatggaccaCTTGATGCTGCTGGCCTCCATGACGGTCATTTTCGTTGTCTGCTCCTTGCCGCTCACTATTGCCGGTTTTGCCAATGCCATCGAGCCGGTGGGTGACGACCAGGAGAACCTGCTGGCGTTCCGTTTCCAGGCCCTCAACCCCATCGTGGACCCCTGGGTCTTCATCATCTTCCGCAAGTCTGTGTTCCGCCACCTCCGCTCGCTGCTGCGCTGCCGCTTCACGGGGGGAGCGGTGAAGAACACGGCCCACTGCACCTTCTCCTTAACCCCTGACGACCACAGGGAGTCTCCCAAACCCTTGCCCTCTGTTTCCTTGCAGCCCAAGCTATACTCCAGCCTCTTATGTGGAGGTGGGACTCGGGGCAGGAAAGAGAATGGGAtttagggatggatggatgtgggaGAGCAGACATTTGGGGGAAGGGGTTCGGGATTTAGGGTTTGGAGAATTAACTTTTTTGACCACTAGTACCTTATCCACTGTTGACTAGGATACATATAGTATACCCGATGCACGAGTATACCCGATGCACGAGTATACCCGATAAACGAGTATACCCGATGCATGAGTATACCCGATGCATGAGCTACATGTTTCATACATGTGAGTGCCATATAAAAAGACTGCAAAGTGAGCGATTACGCCTCCAAACACActgaaaacaaaaaaaactccAAGCAACTGAAATGGATGTATGCAGGAGACCA

Function

symbol description
ptgir Enables prostacyclin receptor activity. Predicted to be involved in several processes, including adenylate cyclase-activating G protein-coupled receptor signaling pathway; negative regulation of smooth muscle cell proliferation; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Orthologous to human PTGIR (prostaglandin I2 receptor).

NR:

description
prostacyclin receptor-like

GO: NA

KEGG:

id description
K04263 PTGIR; prostacyclin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587411.2 True 1505 mRNA 0.56 2 6610446 6672160

Neighbor

gene id symbol gene type direction distance location
LOC110507418 NA coding downstream 98336 6501784 ~ 6512110 (-)
LOC110507421 gemin7 coding downstream 119658 6489704 ~ 6491119 (-)
bmp16 LOC106612383 coding downstream 143099 6456398 ~ 6467347 (-)
LOC110507413 ppp1r37 coding downstream 190734 6367043 ~ 6419712 (-)
LOC110507422 LOC106612386 coding downstream 247125 6358173 ~ 6363321 (-)
LOC110507427 NA coding upstream 16361 6688521 ~ 6694030 (-)
LOC110507428 LOC106612376 coding upstream 22005 6694165 ~ 6704533 (-)
LOC118944637 NA coding upstream 85475 6757635 ~ 6760305 (-)
ap2s1 AP2S1 coding upstream 139246 6811406 ~ 6816589 (-)
tmem160 tmem160 coding upstream 313480 6985640 ~ 6988182 (-)
G2046069 NA non-coding downstream 6353 6603629 ~ 6604093 (-)
G2046027 NA non-coding downstream 66605 6543548 ~ 6543841 (-)
G2046026 NA non-coding downstream 68855 6541365 ~ 6541591 (-)
G2046023 NA non-coding downstream 73353 6536837 ~ 6537093 (-)
G2046022 NA non-coding downstream 74434 6535684 ~ 6536012 (-)
G2046119 rtn2 non-coding upstream 36372 6708532 ~ 6714206 (-)
G2046128 NA non-coding upstream 46255 6718415 ~ 6719266 (-)
G2046136 NA non-coding upstream 64689 6736849 ~ 6737087 (-)
G2046137 NA non-coding upstream 65377 6737537 ~ 6737767 (-)
LOC110507410 LOC106612495 other downstream 374924 6228113 ~ 6235871 (-)
G2045223 LOC106612485 other downstream 740307 5868575 ~ 5870139 (-)
kmt2a kmt2a other downstream 1068813 5531877 ~ 5586139 (-)
LOC110507058 egln2 other upstream 320223 6992367 ~ 7028249 (-)
LOC110507059 dscaml1 other upstream 509925 7182085 ~ 7411701 (-)
fxyd6 fxyd6 other upstream 770513 7442657 ~ 7468560 (-)
G2046935 NA other upstream 833559 7505719 ~ 7510925 (-)
LOC110507449 LOC106580720 other upstream 1131723 7803655 ~ 7904639 (-)

Expression


Co-expression Network