LOC110507427


Basic Information

Item Value
gene id LOC110507427
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6688521 ~ 6694030 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587414.2
CCCGTTGAGCACGGGTTCTCCGGAATGTGTTATCAGGGTGTGTCAAGACTCAACACCTCCACCCTAATTGCGCCGGCCAAGATTTAATTTGACAGACACAGTGTCCCTCTCACCTCCATACCCCTTAAACACTAACaggcattaaaaaaaaacacacaaccaaCTGGATAGAACTGGTCTGCAGAAAGCACATGCAGCAGAAGAGGATAAATactaaaaacagtagaaagacaaGACTGTTGCCAGTTATCAGTAGCTGAATTGGAATACAATTGAACATGGATGGTGGCTATGGCAGCACGGCAGTGGGCTCTGGGATGTCGGGCAGTCTGGGCGGCTCTGAGACGGTCCCACTGCTAATCACGGACCCCGAACCAGAGACGCCGAAATGGCAGCCCATGTCCAAGGAACAGCTGGAGCTCGAAGCCGGGGGCCCGGGATGGAGGAAAATACGCTCCCGCCTGGTGGTGGTCTTCTGGCTGGGTTGGCTGGCCTTGCTGGGCGCCTCAATCACCATCATAGTGCAGAGCCCTCGGCCGGTCGCACCGCCGCTACTGTGGTGGCAGAGGGCGCTGTTTTACCGCCTACAGCCCATACTGCTCATGGACGCCCAGAACGAGGTGCCAGATGGTATCGACGTGGTGTGTGAGCAGCTACCATACCTGAAGTCCCTGGGTGTAAAGGCTCTGCTTCTGGAGGGGCTGTTTCACCAGGACGTGTCCCCACTGGACCTCAGGAAGATTGATGAGCGAGTGGGTACAGTGCCTCAGATCCAACAACTGCTCATGGAGAGCCACAACGCAGGCATCAAAGTAGTGTTTGACTTCTGTGATCTGGACCTGTTCGGACCCAAAGACTCAGTAGGCAACGACTCTGCTGTGCTCTCTGACCTCACTGGCTCAATACAGTATGCACTCCGATTTTGGTTGGAACAGGGTGTGGCAGGATTTGGGATCTGTGACACAGATGCTGCATATTCCGAAAAGACCCTGACCGAGTGGAGAGTTCTGGTCAAGGAGTTCAGCACATCAGATGATGAGAGGATTGTAGTGGTGAAACAAACAGGAGAGTCTCTACCTGCCCTGAATACCTCTAGCACGTCAGTCAACAGCTCATTGGTGGAGCTGGTTATGATGTCACTACTGCCGCACGAGCATCACCTCCTGTCCGGACAGGAAGTGGCCATTGCTGTGGAGAGACACCTGTCGACATCCCACGGCGAACTTTGGCCCAGTTGGACGGTGGGCGGAGAAGCATCACCGATGTTGCACAGAATACTCCTGGTTCTGATGATGACACTACCTGGATCACCTGTTGTCAAATACGGAGAAGAAATAGTTAATTCGCCGAATGCGTCTGCAGACATGAGCTGGGAACGTGAGGCAGACAAGACCATTGGACTGAACGATTCTGGGGAACAGAGGAAGCTCAAACGCTCTGCCTTGGCTCTGTTCATCTCCCTCAGTGGCTCTCGCCTCAGAGAAGAATCTCTCCTTTATGGGAGCTTCACCTTTCTCCCCTTCAacaccacctccctccccccctACTCCAACTCCACCCTGGCACCCCCATTAGCCCCTGTGCTAGCCTTCCTGCGCTCTTGGGGCTGTGTCCACTTCCTGGTGCTGCTCAACTTTGGGCCTGAGGCCCAAGCCCTGGACCCAGCATGGGCTCCCAGCCTTCCCACTGCTGGGGTGTTTGTGACCAGCACAGGGATGGACCGCCTGGGCGGCACCTCCCTGGAAACACTGAGGCTCCAGCCAGAGGAGGCCATAGTCATCAAACTGTTTGAGTCTGACAGCTACTCCTCCTAGGGCCTGTGGTCTGGGGCATTAGGCAGAGTGAGAGGGGCTAGGACTGGATGCAGGGGAGGATAACTAGGCAGAAATGGTAACTATTTAGCCATctgttcctttttttttttttttgaggctATATCAAAATGTCAATACGTTCTTAAAATAATAAATCATTGTTTATCATTT
>XM_036965487.1
CATTGATGTAGGGAAATTGCGTTTTGTTTGTCAGGTGGTCAGACTATTGCTTTGACCAGGAAAATAGACCGTAGCCCAGGAATTGTCTTATTTCATCTGATCAATATCGGTTAAATTAAACGTTGGTAAATTTAGCTAATGGATGGAGTTAGAATTCAAATTGACAAGTAGCTGAATTGGAATACAATTGAACATGGATGGTGGCTATGGCAGCACGGCAGTGGGCTCTGGGATGTCGGGCAGTCTGGGCGGCTCTGAGACGGTCCCACTGCTAATCACGGACCCCGAACCAGAGACGCCGAAATGGCAGCCCATGTCCAAGGAACAGCTGGAGCTCGAAGCCGGGGGCCCGGGATGGAGGAAAATACGCTCCCGCCTGGTGGTGGTCTTCTGGCTGGGTTGGCTGGCCTTGCTGGGCGCCTCAATCACCATCATAGTGCAGAGCCCTCGGCCGGTCGCACCGCCGCTACTGTGGTGGCAGAGGGCGCTGTTTTACCGCCTACAGCCCATACTGCTCATGGACGCCCAGAACGAGGTGCCAGATGGTATCGACGTGGTGTGTGAGCAGCTACCATACCTGAAGTCCCTGGGTGTAAAGGCTCTGCTTCTGGAGGGGCTGTTTCACCAGGACGTGTCCCCACTGGACCTCAGGAAGATTGATGAGCGAGTGGGTACAGTGCCTCAGATCCAACAACTGCTCATGGAGAGCCACAACGCAGGCATCAAAGTAGTGTTTGACTTCTGTGATCTGGACCTGTTCGGACCCAAAGACTCAGTAGGCAACGACTCTGCTGTGCTCTCTGACCTCACTGGCTCAATACAGTATGCACTCCGATTTTGGTTGGAACAGGGTGTGGCAGGATTTGGGATCTGTGACACAGATGCTGCATATTCCGAAAAGACCCTGACCGAGTGGAGAGTTCTGGTCAAGGAGTTCAGCACATCAGATGATGAGAGGATTGTAGTGGTGAAACAAACAGGAGAGTCTCTACCTGCCCTGAATACCTCTAGCACGTCAGTCAACAGCTCATTGGTGGAGCTGGTTATGATGTCACTACTGCCGCACGAGCATCACCTCCTGTCCGGACAGGAAGTGGCCATTGCTGTGGAGAGACACCTGTCGACATCCCACGGCGAACTTTGGCCCAGTTGGACGGTGGGCGGAGAAGCATCACCGATGTTGCACAGAATACTCCTGGTTCTGATGATGACACTACCTGGATCACCTGTTGTCAAATACGGAGAAGAAATAGTTAATTCGCCGAATGCGTCTGCAGACATGAGCTGGGAACGTGAGGCAGACAAGACCATTGGACTGAACGATTCTGGGGAACAGAGGAAGCTCAAACGCTCTGCCTTGGCTCTGTTCATCTCCCTCAGTGGCTCTCGCCTCAGAGAAGAATCTCTCCTTTATGGGAGCTTCACCTTTCTCCCCTTCAacaccacctccctccccccctACTCCAACTCCACCCTGGCACCCCCATTAGCCCCTGTGCTAGCCTTCCTGCGCTCTTGGGGCTGTGTCCACTTCCTGGTGCTGCTCAACTTTGGGCCTGAGGCCCAAGCCCTGGACCCAGCATGGGCTCCCAGCCTTCCCACTGCTGGGGTGTTTGTGACCAGCACAGGGATGGACCGCCTGGGCGGCACCTCCCTGGAAACACTGAGGCTCCAGCCAGAGGAGGCCATAGTCATCAAACTGTTTGAGTCTGACAGCTACTCCTCCTAGGGCCTGTGGTCTGGGGCATTAGGCAGAGTGAGAGGGGCTAGGACTGGATGCAGGGGAGGATA
>XM_036965486.1
GGGTTGGATGTCAGTCTGGTGTTGGTTGCCACAATGTTTACTAGCAGTTTATGCCTTTTGTAACAAGAAATGATGCGATGTAATTAAATAGCCAAGATTTTCTATAAATCGATCAATATTATAGATAACATAATTCAGCATGTTATGCCTTGAACATGACATTTTAGCAAATGATTCACAAACATGTGGGTGTGACATGTGAGCGCCAAGGTAGCTGAATTGGAATACAATTGAACATGGATGGTGGCTATGGCAGCACGGCAGTGGGCTCTGGGATGTCGGGCAGTCTGGGCGGCTCTGAGACGGTCCCACTGCTAATCACGGACCCCGAACCAGAGACGCCGAAATGGCAGCCCATGTCCAAGGAACAGCTGGAGCTCGAAGCCGGGGGCCCGGGATGGAGGAAAATACGCTCCCGCCTGGTGGTGGTCTTCTGGCTGGGTTGGCTGGCCTTGCTGGGCGCCTCAATCACCATCATAGTGCAGAGCCCTCGGCCGGTCGCACCGCCGCTACTGTGGTGGCAGAGGGCGCTGTTTTACCGCCTACAGCCCATACTGCTCATGGACGCCCAGAACGAGGTGCCAGATGGTATCGACGTGGTGTGTGAGCAGCTACCATACCTGAAGTCCCTGGGTGTAAAGGCTCTGCTTCTGGAGGGGCTGTTTCACCAGGACGTGTCCCCACTGGACCTCAGGAAGATTGATGAGCGAGTGGGTACAGTGCCTCAGATCCAACAACTGCTCATGGAGAGCCACAACGCAGGCATCAAAGTAGTGTTTGACTTCTGTGATCTGGACCTGTTCGGACCCAAAGACTCAGTAGGCAACGACTCTGCTGTGCTCTCTGACCTCACTGGCTCAATACAGTATGCACTCCGATTTTGGTTGGAACAGGGTGTGGCAGGATTTGGGATCTGTGACACAGATGCTGCATATTCCGAAAAGACCCTGACCGAGTGGAGAGTTCTGGTCAAGGAGTTCAGCACATCAGATGATGAGAGGATTGTAGTGGTGAAACAAACAGGAGAGTCTCTACCTGCCCTGAATACCTCTAGCACGTCAGTCAACAGCTCATTGGTGGAGCTGGTTATGATGTCACTACTGCCGCACGAGCATCACCTCCTGTCCGGACAGGAAGTGGCCATTGCTGTGGAGAGACACCTGTCGACATCCCACGGCGAACTTTGGCCCAGTTGGACGGTGGGCGGAGAAGCATCACCGATGTTGCACAGAATACTCCTGGTTCTGATGATGACACTACCTGGATCACCTGTTGTCAAATACGGAGAAGAAATAGTTAATTCGCCGAATGCGTCTGCAGACATGAGCTGGGAACGTGAGGCAGACAAGACCATTGGACTGAACGATTCTGGGGAACAGAGGAAGCTCAAACGCTCTGCCTTGGCTCTGTTCATCTCCCTCAGTGGCTCTCGCCTCAGAGAAGAATCTCTCCTTTATGGGAGCTTCACCTTTCTCCCCTTCAacaccacctccctccccccctACTCCAACTCCACCCTGGCACCCCCATTAGCCCCTGTGCTAGCCTTCCTGCGCTCTTGGGGCTGTGTCCACTTCCTGGTGCTGCTCAACTTTGGGCCTGAGGCCCAAGCCCTGGACCCAGCATGGGCTCCCAGCCTTCCCACTGCTGGGGTGTTTGTGACCAGCACAGGGATGGACCGCCTGGGCGGCACCTCCCTGGAAACACTGAGGCTCCAGCCAGAGGAGGCCATAGTCATCAAACTGTTTGAGTCTGACAGCTACTCCTCCTAGGGCCTGTGGTCTGGGGCATTAGGCAGAGTGAGAGGGGCTAGGACTGGATGCAGGGGAGGATA
>XM_021587413.2
CCCGTTGAGCACGGGTTCTCCGGAATGTGTTATCAGGGTGTGTCAAGACTCAACACCTCCACCCTAATTGCGCCGGCCAAGATTTAATTTGACAGACACAGTGTCCCTCTCACCTCCATACCCCTTAAACACTAACaggcattaaaaaaaaacacacaaccaaCTGGATAGAACTGGTCTGCAGAAAGCACATGCAGCAGAAGAGGATAAATactaaaaacagtagaaagacaaGACTGTTGCCAGTTATCAGGTGCGTTATGATGCTTTTAGAGATCGTTGCATTGGCTTTGACAGATATTCGGGGAGACCGATGCGGATTGTCACTTTACTCTGTAGCTGAATTGGAATACAATTGAACATGGATGGTGGCTATGGCAGCACGGCAGTGGGCTCTGGGATGTCGGGCAGTCTGGGCGGCTCTGAGACGGTCCCACTGCTAATCACGGACCCCGAACCAGAGACGCCGAAATGGCAGCCCATGTCCAAGGAACAGCTGGAGCTCGAAGCCGGGGGCCCGGGATGGAGGAAAATACGCTCCCGCCTGGTGGTGGTCTTCTGGCTGGGTTGGCTGGCCTTGCTGGGCGCCTCAATCACCATCATAGTGCAGAGCCCTCGGCCGGTCGCACCGCCGCTACTGTGGTGGCAGAGGGCGCTGTTTTACCGCCTACAGCCCATACTGCTCATGGACGCCCAGAACGAGGTGCCAGATGGTATCGACGTGGTGTGTGAGCAGCTACCATACCTGAAGTCCCTGGGTGTAAAGGCTCTGCTTCTGGAGGGGCTGTTTCACCAGGACGTGTCCCCACTGGACCTCAGGAAGATTGATGAGCGAGTGGGTACAGTGCCTCAGATCCAACAACTGCTCATGGAGAGCCACAACGCAGGCATCAAAGTAGTGTTTGACTTCTGTGATCTGGACCTGTTCGGACCCAAAGACTCAGTAGGCAACGACTCTGCTGTGCTCTCTGACCTCACTGGCTCAATACAGTATGCACTCCGATTTTGGTTGGAACAGGGTGTGGCAGGATTTGGGATCTGTGACACAGATGCTGCATATTCCGAAAAGACCCTGACCGAGTGGAGAGTTCTGGTCAAGGAGTTCAGCACATCAGATGATGAGAGGATTGTAGTGGTGAAACAAACAGGAGAGTCTCTACCTGCCCTGAATACCTCTAGCACGTCAGTCAACAGCTCATTGGTGGAGCTGGTTATGATGTCACTACTGCCGCACGAGCATCACCTCCTGTCCGGACAGGAAGTGGCCATTGCTGTGGAGAGACACCTGTCGACATCCCACGGCGAACTTTGGCCCAGTTGGACGGTGGGCGGAGAAGCATCACCGATGTTGCACAGAATACTCCTGGTTCTGATGATGACACTACCTGGATCACCTGTTGTCAAATACGGAGAAGAAATAGTTAATTCGCCGAATGCGTCTGCAGACATGAGCTGGGAACGTGAGGCAGACAAGACCATTGGACTGAACGATTCTGGGGAACAGAGGAAGCTCAAACGCTCTGCCTTGGCTCTGTTCATCTCCCTCAGTGGCTCTCGCCTCAGAGAAGAATCTCTCCTTTATGGGAGCTTCACCTTTCTCCCCTTCAacaccacctccctccccccctACTCCAACTCCACCCTGGCACCCCCATTAGCCCCTGTGCTAGCCTTCCTGCGCTCTTGGGGCTGTGTCCACTTCCTGGTGCTGCTCAACTTTGGGCCTGAGGCCCAAGCCCTGGACCCAGCATGGGCTCCCAGCCTTCCCACTGCTGGGGTGTTTGTGACCAGCACAGGGATGGACCGCCTGGGCGGCACCTCCCTGGAAACACTGAGGCTCCAGCCAGAGGAGGCCATAGTCATCAAACTGTTTGAGTCTGACAGCTACTCCTCCTAGGGCCTGTGGTCTGGGGCATTAGGCAGAGTGAGAGGGGCTAGGACTGGATGCAGGGGAGGATA
>TU2340543
AGGCCTCAGACCCGTTGAGCACGGGTTCTCCGGAATGTGTTATCAGGGTGTGTCAAGACTCAACACCTCCACCCTAATTGCGCCGGCCAAGATTTAATTTGACAGACACAGTGTCCCTCTCACCTCCATACCCCTTAAACACTAACaggcattaaaaaaaaacacacaaccaaCTGGATAGAACTGGTCTGCAGAAAGCACATGCAGCAGAAGAGGATAAATactaaaaacagtagaaagacaaGACTGTTGCCAGTTATCAGGTGCGTTATGATGCTTTTAGAGATCGTTGCATTGGCTTTGACAGATATTCGGGGAGACCGATGCGGATTGTCACTTTACTCTGGTGTGTATTTCTCAGCACAAATCTTACAAGACTCTTTTCAACAGTAATACCAATGTATTGTGTTAATGGGAACCTTTTTTCAAACTCACAGGGTTGGATGTCAGTCTGGTGTTGGTTGCCACAATGTTTACTAGCAGTTTATGCCTTTTGTAACAAGAAATGATGCGATGTAATTAAATAGCCAAGATTTTCTATAAATCGATCAATATTATAGATAACATAATTCAGCATGTTATGCCTTGAACATGACATTTTAGCAAATGATTCACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587414.2 False 1985 mRNA 0.53 10 6688521 6694020
XM_036965487.1 False 1791 mRNA 0.55 10 6688630 6693337
XM_036965486.1 False 1834 mRNA 0.54 10 6688630 6693594
XM_021587413.2 False 1959 mRNA 0.55 10 6688630 6694020
TU2340543 True 618 lncRNA 0.40 1 6693413 6694030

Neighbor

gene id symbol gene type direction distance location
ptgir ptgir coding downstream 16361 6610446 ~ 6672160 (-)
LOC110507418 NA coding downstream 176411 6501784 ~ 6512110 (-)
LOC110507421 gemin7 coding downstream 197733 6489704 ~ 6491119 (-)
bmp16 LOC106612383 coding downstream 221174 6456398 ~ 6467347 (-)
LOC110507413 ppp1r37 coding downstream 268809 6367043 ~ 6419712 (-)
LOC110507428 LOC106612376 coding upstream 145 6694165 ~ 6704533 (-)
LOC118944637 NA coding upstream 63615 6757635 ~ 6760305 (-)
ap2s1 AP2S1 coding upstream 117386 6811406 ~ 6816589 (-)
tmem160 tmem160 coding upstream 291620 6985640 ~ 6988182 (-)
LOC110507058 egln2 coding upstream 298347 6992367 ~ 7028249 (-)
G2046069 NA non-coding downstream 84428 6603629 ~ 6604093 (-)
G2046027 NA non-coding downstream 144680 6543548 ~ 6543841 (-)
G2046026 NA non-coding downstream 146930 6541365 ~ 6541591 (-)
G2046023 NA non-coding downstream 151428 6536837 ~ 6537093 (-)
G2046022 NA non-coding downstream 152509 6535684 ~ 6536012 (-)
G2046119 rtn2 non-coding upstream 14512 6708532 ~ 6714206 (-)
G2046128 NA non-coding upstream 24395 6718415 ~ 6719266 (-)
G2046136 NA non-coding upstream 42829 6736849 ~ 6737087 (-)
G2046137 NA non-coding upstream 43517 6737537 ~ 6737767 (-)
G2046145 NA non-coding upstream 56702 6750722 ~ 6751116 (-)
LOC110507410 LOC106612495 other downstream 452999 6228113 ~ 6235871 (-)
G2045223 LOC106612485 other downstream 818382 5868575 ~ 5870139 (-)
kmt2a kmt2a other downstream 1146888 5531877 ~ 5586139 (-)
LOC110507059 dscaml1 other upstream 488065 7182085 ~ 7411701 (-)
fxyd6 fxyd6 other upstream 748653 7442657 ~ 7468560 (-)
G2046935 NA other upstream 811699 7505719 ~ 7510925 (-)
LOC110507449 LOC106580720 other upstream 1109863 7803655 ~ 7904639 (-)

Expression


Co-expression Network