LOC110507428 (LOC106612376)


Basic Information

Item Value
gene id LOC110507428
gene name LOC106612376
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6694165 ~ 6704533 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587415.2
GCTCCCTGAATTTGCgtcccgactctcagcgtacatccGTACAATCCGAAACGCAACCAAAATAAACTGTAGatacatccaacaagtttgtagagccacaagcttgatgtagtcacatgctaagaatatgggaccaaatactaacgTTTCGACTACTTTAATATACAAGTGaatttgtgtaaaaaaaataaaacacgtCTTCAAATGGTGGGAATAGATAAAGCGCACtcatttctaaatggtaaaacaaattagaaataccctcaaataataATCatctgaaacatttgatctccaatCCAAAACGTGGGAGTATAGAGCGAAATTTACACcgtttagcttcactgtccaaataaatacagaGGCGAGTGCACGTGTAGGTTACTTACTCATTCACTTCTGTACCTAACCACCATAGAGCGGGTCCCATCCCCAACCTGAACACATAACGCGACATATAACGGGCTCTATAGATAGCGTGATCAGCTCCCAACCTCATGTATACACAATTTTAAATCCAGTAATCTACAAGACCACGCAAATGCATGCCAGGTAATTATTTTAAGAGAAACAGAGGTGGATGAGGAAATGCCTACACTTATACCATGTGTTTGTGGCATCGTGttaaagagaaggagagaaaaggagaaagagagtggcGGACTATATTCAGTGAATAAATTGCTAACAGTTCTGAACATAAACTGCAGGGATCTAGTTAGAGAGTTGGGAGAGCTCATTCTATCTGTCCACCATGCTGCTATGGAACGCTGACAGGCTCATAATCCATACTGTTCATTCGGTCATGCAGTGCTAATCTAAGATCCCTTGCAGGTTGGAGATTAActagtagcagagagagagagagagagaggcagtgaccATAGATTTAGGCCAATAGCATCACAGGGCAAACACTGGCCagggacaggagagaaagagCGGTAGAAAgacaagagaaggagagagagtgggcgccatacagacacacactccaCATATCACAACACATACACATTGAGACAAACGCTAGGAATCCAGAAACTACGCCCACAAGCTAGTTTTACAAAGACAAGGATGGCCACCACGATTTCTGCCAGTATCTAGTGAAGCCCACCTGAATACAACTCTACAGTCCGGAGTTGACACATTGTCCACCTGCTCAGCGTGTCCAGCTAAACCCACTGCCCTGGACCTGCTGCGGGGGACACAGactgggagaaggaggagagaggggaacaagAGGACCAGTGCCAGGTCAGGAAAGAGACTCGAGCGGCACCTCCGAGGAGCTATGAGGACAGCCAGGCGGGCCAGCACCGTGGAGGTGCCCTCCTTCCTCCGCCAGCTAGCCAAGGAGACAGAGAAGATGGTCACCTTCTTCTTtaaggggggacagagagatggcCAGGAGGGGAGCGAAGAGGACTTCAGTGATGAGGATAACGGGCCGAGTGTCTACCTGGACCGGCCCGTCCTGGATAAACACACGGCCGAGGGGAGGTCTCAGTGGGGGGTGAACTATGCAACGGCCAGCATGCAGGGCTGGAGGGCGCAGATGGAGGACGCCCACACCTGCATGCCggagatgggaggggagctggCGGAGTGGGGCTACTATGCAGTGTTTGATGGACACGCTGGCAACACGGTGGCACAGTACTGCTCCCATAACCTGCTGCAACACATCCTCGCTACAGGGCGCGTAAAGGCACAGGAGGAGCCTGACGACGTGAAGGAGGGGATCGTCGAGGGCTTCCTGGCCATTGACAGCCACATGCACACACTGACGCGCCAGGAATGCTGGGAGCGCAGCGGCTCCACGGCGGCCGCCGTCATGCTCTCGCCGCAGTACGTCTACTTCGTCAACTGTGGCGACTCACGGACGCTCCTCTGCCGCGACGGCCAGGTCATCTTCTACACGGAGGACCACAAACCCTTCAACCCCAGGGAGAAGGAGCGGATACAGAACGCGGGCGGCTCGGTGACCCAGCATAGGGTGAACGGCTCCCTGGCCGTGTCCAGGTCCCTGGGAGACTTTGACTTTAAGGAGGTGGACTGGAGGTCCCAGACTGAGCAGCTGGTCTCCCCAGAGCCAGAGGTGTACGAGCTGGAGAGGTCCCCGCAAGACGAGTTCCTCATAGTGGCTTGTGACGGAGTGTGGGACGCCATCGGCAACGAGGAGCTGTGTGCGTTCGTCCACAGTCGCCTGCAGTTGTGCGATGACCTGAGGGAGATCTGCAACCAGGTCATTGACCTCTGCCTCTATAAGGGTAGTTTGGACAACATGAGCATCATCATCGTGACCTTCCCTGGTGCACCCCAGGTGTCACAAGAGGCCCTACAAAAAGAGGCCGAGCTAGAGACAATCCTCGAAGCTAAAGTGGAAGagattGTCAACTTGCTAAAGTCGCGGGACAAGGACCCAGACCTGCTGTACGTGATGAAGTTTCTGGTCTCTGAGGACATACCTGGCCTGCCACCAGGGGGAGGAGTCACCAGCAAAAGAGACTGTGTCATCTCTGCATATCAAAAGTTTGTAACGCCCTTCAGATCTCTGGAACCAATGGTAGAAGACCAAACATAGTGCAAGAGCGTGCCCTCTGTCTCACTAAACACATAAGCGCAAACTGGACTACAAAAGTAACTAAGttacttcccccccccccccgacacgtAATTGACACGTCGCATTCCAGGACATCGGAGGATCTGAAGAGTCCAACTACTCGTATCCATGGAAATGTGTTCTTCAGCCTCGCGTATCCATGGCGACCATTTAGAATTGGGGCCTCTGCTTTTCAGCTGAGCAATCAGCCAATAGCTAAATAAAGAACTATGGTGGGAGGGGGTGTGACCTGGGCCTGCCCTTAGCCAATCGTCTCTTCTCTGTTCCTCATTTGCACTGTCTATCAATAAGTCTACTGTAGCATCAGAGAATATCAAATAGTTAGCATTATTCCAGTAAGGGAAGAATTACATATTCCAAAACTATTCTTTAAAATACATGATAATTAGATATAATATTTATTAACTTTCTCACTTTACACTTTACAGTGCCTGGGTAGTTCATTTTCTTCAAGACTAGAAGCTTATGAATAAGGCTGATCATGTTACTTCATTTAAAAATCAAACAGATATGTTTCAGCAGTGTGCAACTCCATACTGCCGCATCAAATTCAATTGAAAAAAAACACCCCTTCAACCATTGCAGACCAGCGAAGGCTCCGATATGCATGTGTCCTGTGATGGCATGGCCTACACTAAATAATCTGCAGAATCCTGTGAGGGACCATAGGTGACAGGAATAGATGTGTGTCATGACGATGATGGACACCACATCATATGTCCAagggtgtgtgaatgtgtgtgtgtgtgtgtgagtagataACATGGGCTGTGGGATTATTAGCACACACACTGTAACCTGTTGCAGTTTGGAGCACAGACGCTGACAGTTAGACACGATTTAGACCCGTGTGACAGGTAAAGGAGTACAGCTACAGGTAAAATGTTCTTCTGCTTTTGAAAATAAGCGGGTTTTTGCCGTTAGCACGTTTTTCTTTTCGATACATGTCATTGTGCTGCTTTACAAAGCTCTCTGTTGCTGTACGGTTACTTTATTCCTCCTTCGGATCACACCAAACGGGTGGACATAGTAGCTGTATTCCatgacagaggtcagaggtcaaaaaGAGCTAGACTCGAGATGCTGCGGCATGTCTGTGTGAATTCTATGGAATCGGGAGGAAGTGGGATCAAAGAGCGCAACAGATTACCATCAGGACTTTCACAAATGTATGTCAGTGATTTGATGACTGTATGGGCAAGCCCTTAACTGACCCAAGGGGCAataaatgaatgaaataaaatgACATTCTGGGATTTTTGATAGAGCGGAGTGGGCTCTTACTCCTAAAATGTTTGATAGATACAGCACTACAGGGTTAGACTAAGGACCAAGGGAGAAGAATACAAGACAGTTCCGTAACGACCCATTGATATCGTTCCAGAACTGTCTTTTGGCCAGCTGTATGCATTTCAACCAGGGGCGTCGAATGcgggtttttcctttcaattaaccaggtgaggggagttctttact

Function

NR:

description
protein phosphatase 1A-like

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587415.2 True 4105 mRNA 0.49 5 6694165 6704533

Neighbor

gene id symbol gene type direction distance location
LOC110507427 NA coding downstream 145 6688521 ~ 6694030 (-)
ptgir ptgir coding downstream 22005 6610446 ~ 6672160 (-)
LOC110507418 NA coding downstream 182055 6501784 ~ 6512110 (-)
LOC110507421 gemin7 coding downstream 203377 6489704 ~ 6491119 (-)
bmp16 LOC106612383 coding downstream 226818 6456398 ~ 6467347 (-)
LOC118944637 NA coding upstream 53102 6757635 ~ 6760305 (-)
ap2s1 AP2S1 coding upstream 106873 6811406 ~ 6816589 (-)
tmem160 tmem160 coding upstream 281107 6985640 ~ 6988182 (-)
LOC110507058 egln2 coding upstream 287834 6992367 ~ 7028249 (-)
LOC110507438 LOC106612392 coding upstream 398978 7103511 ~ 7108254 (-)
G2046069 NA non-coding downstream 90072 6603629 ~ 6604093 (-)
G2046027 NA non-coding downstream 150324 6543548 ~ 6543841 (-)
G2046026 NA non-coding downstream 152574 6541365 ~ 6541591 (-)
G2046023 NA non-coding downstream 157072 6536837 ~ 6537093 (-)
G2046119 rtn2 non-coding upstream 3999 6708532 ~ 6714206 (-)
G2046128 NA non-coding upstream 13882 6718415 ~ 6719266 (-)
G2046136 NA non-coding upstream 32316 6736849 ~ 6737087 (-)
G2046137 NA non-coding upstream 33004 6737537 ~ 6737767 (-)
G2046145 NA non-coding upstream 46189 6750722 ~ 6751116 (-)
LOC110507410 LOC106612495 other downstream 458643 6228113 ~ 6235871 (-)
G2045223 LOC106612485 other downstream 824026 5868575 ~ 5870139 (-)
kmt2a kmt2a other downstream 1152532 5531877 ~ 5586139 (-)
LOC110507059 dscaml1 other upstream 477552 7182085 ~ 7411701 (-)
fxyd6 fxyd6 other upstream 738140 7442657 ~ 7468560 (-)
G2046935 NA other upstream 801186 7505719 ~ 7510925 (-)
LOC110507449 LOC106580720 other upstream 1099350 7803655 ~ 7904639 (-)

Expression


Co-expression Network