ap2s1 (AP2S1)


Basic Information

Item Value
gene id ap2s1
gene name AP2S1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6811406 ~ 6816589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587424.2
TTTTATCGAACGATTTTACGGGTCTGATaaaactacatttcccacaatgccaTGCACCGTTTCCTGTACATCATACTCGTGAAGATAGCGGGCAATCGGTCGTCAAAACAATCCTATCATTTTGAGAATTtatgtcaaatcaaatatatAAATCACCAGGCTACGGGAATTGATATTGTTTAAAACAACCGACTCAAAGAAAAGACAATGATCCGCTTCATCCTTATTCAGAACCGAGCAGGGAAGACCCGACTGGCCAAGTGGTACATGCAGTTTGATGACGATGAGAAACAGAAGCTGATTGAGGAGGTACATGCTGTGGTGACTGTCCGTGATGCCAAGCACACCAACTTTGTGGAGTTCAGGAACTTCAAGATCATCTATAGGCGCTATGCAGGTCTGTACTTCTGTATATGTGTGGACGTGACAGACAACAACCTGGCATACCTGGAGGGCATTCACAACTTTGTGGAGGTGTTGAATGAGTATTTCCACAACGTATGCGAGTTGGACCTGGTGTTCAACTTCTACAAGGTGTACACGGTGGTGGACGAGATGTTCCTGGCGGGGGAGATCAGAGAGACGAGCCAGACCAAGGTCCTCAAGCAGCTGCTAATGCTCCAGTCCCTCGAGTAGCCAACAGAGCAGCCATCTTGAACAGTCCATCGCCTAACCCCATCAATGTCACTCTGGAATGGACCCCTCTCATTTGCCAGCCTCCATGGAGCAGGCTCCACCCCTTACAGAAACCAGGGGCTTATTCACAAAGTCACAGAAGGTTCAGATAGAAATGCATGGTGTAGAACAGACATTTTCTGTCATGTAGAATTGGGAATCTAGTCAGCTCTACACATTACATTTCTATTTGCAACAATGACAGTTTCAACCTCCTGATTATGCCCCATAAAGACTGTATTTTGGTGATGCGTGGCAGATATGGCCCTTGACATTTTCATTTCTTAACCACCAGTTCAAGTAAAATCATCTGGATGAATATATTTGCAGCACTGAAAATAAATGTTCTCTCTATGCCCTGTCTCAAGCTGGAGGCTGCACTTATGGTAGACTAGGGTTGCCAGTTATTCACCGGTGTATACTGCCTATACTAGTGGAGAGCGAGGATAACAATGATGCACTGTTCTGGCAACCCCAGAGCGGCACTAAAGTAGCTAACAAGCACAAGAAAACACTTGTAAACGGCTTGTGATATCCCTGTCTACTGTTCACCATACTTCTGCCTGGGAGAATCACAGTTTGAGCTGCAGAGTGACTAAACCACCACTACGAATGCCCACTGAACTCTGGTGGTGGTTCACAGTTCAATGGAGTGCACTGGTAATGGCAACCTGTAAAGGGTCGCATCTACTGTGATATTGAATAGGAGATTCACTGGTCTTAACTTAATATCATGTCAGGTTGTATATCAGACAATGCGTCTCCACTCCACATATGGTGCTTGTTAGTCACACCCAGATGTGTTCAAATTTAAATAGACACTACTACTTTAAGAAAAGTTACTGATAAGGAATCTAGCTAATGGAAATATACAGTGATATATTTTACGTGAAGTTTGTTTTgtatggtgtatatatatatatatatggtgtaACCATTGTTGTCCATTCCAGGCCTTTCCTCAGCTTCTGCCTCTCGTCACTGGGTGTTTAATACACAGAACCGAATTGGGGGAAATTCCATTAATATTCACTGGTCACCTCATTCATACAACAAACAATGGGTTTCGAACATCAACCAGAGGCCAAACAATAGGTCCAAAACTCCAGAGGCACTTATCTAGGTCTGTGACGCCACCTTGTACCGCTTCTCATTGTAAACATGTCCAGTCTTGCACCTCCCAACATATCACACGTTACTATTATGGTctgttaaatgttttgttttttggggCTATAGTGAGAGATGTActgcttctcctcctctcttgtcATGTGAGATGTGAGTTTAGGTGTTACTGTCATTCTATTCCAGTGAGTGTATAtaccaaaaaaaaaatctaagttcTAAATAAAGTGTTACAAA
>XM_021587425.2
TTTTATCGAACGATTTTACGGGTCTGATaaaactacatttcccacaatgccaTGCACCGTTTCCTGTACATCATACTCGTGAAGATAGCGGGCAATCGGTCGTCAAAACAATCCTATCATTTTGAGAATTtatgtcaaatcaaatatatAAATCACCAGGCTACGGGAATTGATATTGTTTAAAACAACCGACTCAAAGAAAAGACAATGATCCGCTTCATCCTTATTCAGAACCGAGCAGGGAAGACCCGACTGGCCAAGTGGTACATGCAGTTTGATGACGATGAGAAACAGAAGCTGATTGAGGAGGTACATGCTGTGGTGACTGTCCGTGATGCCAAGCACACCAACTTTGTGGAGGTGTTGAATGAGTATTTCCACAACGTATGCGAGTTGGACCTGGTGTTCAACTTCTACAAGGTGTACACGGTGGTGGACGAGATGTTCCTGGCGGGGGAGATCAGAGAGACGAGCCAGACCAAGGTCCTCAAGCAGCTGCTAATGCTCCAGTCCCTCGAGTAGCCAACAGAGCAGCCATCTTGAACAGTCCATCGCCTAACCCCATCAATGTCACTCTGGAATGGACCCCTCTCATTTGCCAGCCTCCATGGAGCAGGCTCCACCCCTTACAGAAACCAGGGGCTTATTCACAAAGTCACAGAAGGTTCAGATAGAAATGCATGGTGTAGAACAGACATTTTCTGTCATGTAGAATTGGGAATCTAGTCAGCTCTACACATTACATTTCTATTTGCAACAATGACAGTTTCAACCTCCTGATTATGCCCCATAAAGACTGTATTTTGGTGATGCGTGGCAGATATGGCCCTTGACATTTTCATTTCTTAACCACCAGTTCAAGTAAAATCATCTGGATGAATATATTTGCAGCACTGAAAATAAATGTTCTCTCTATGCCCTGTCTCAAGCTGGAGGCTGCACTTATGGTAGACTAGGGTTGCCAGTTATTCACCGGTGTATACTGCCTATACTAGTGGAGAGCGAGGATAACAATGATGCACTGTTCTGGCAACCCCAGAGCGGCACTAAAGTAGCTAACAAGCACAAGAAAACACTTGTAAACGGCTTGTGATATCCCTGTCTACTGTTCACCATACTTCTGCCTGGGAGAATCACAGTTTGAGCTGCAGAGTGACTAAACCACCACTACGAATGCCCACTGAACTCTGGTGGTGGTTCACAGTTCAATGGAGTGCACTGGTAATGGCAACCTGTAAAGGGTCGCATCTACTGTGATATTGAATAGGAGATTCACTGGTCTTAACTTAATATCATGTCAGGTTGTATATCAGACAATGCGTCTCCACTCCACATATGGTGCTTGTTAGTCACACCCAGATGTGTTCAAATTTAAATAGACACTACTACTTTAAGAAAAGTTACTGATAAGGAATCTAGCTAATGGAAATATACAGTGATATATTTTACGTGAAGTTTGTTTTgtatggtgtatatatatatatatatggtgtaACCATTGTTGTCCATTCCAGGCCTTTCCTCAGCTTCTGCCTCTCGTCACTGGGTGTTTAATACACAGAACCGAATTGGGGGAAATTCCATTAATATTCACTGGTCACCTCATTCATACAACAAACAATGGGTTTCGAACATCAACCAGAGGCCAAACAATAGGTCCAAAACTCCAGAGGCACTTATCTAGGTCTGTGACGCCACCTTGTACCGCTTCTCATTGTAAACATGTCCAGTCTTGCACCTCCCAACATATCACACGTTACTATTATGGTctgttaaatgttttgttttttggggCTATAGTGAGAGATGTActgcttctcctcctctcttgtcATGTGAGATGTGAGTTTAGGTGTTACTGTCATTCTATTCCAGTGAGTGTATAtaccaaaaaaaaaatctaagttcTAAATAAAGTGTTACAAA

Function

symbol description
ap2s1 Predicted to enable clathrin adaptor activity. Acts upstream of or within habituation. Predicted to be located in membrane. Predicted to be part of AP-2 adaptor complex. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in familial hypocalciuric hypercalcemia 3. Orthologous to human AP2S1 (adaptor related protein complex 2 subunit sigma 1).

NR:

description
AP-2 complex subunit sigma isoform AP17delta

GO:

id name namespace
GO:0030100 regulation of endocytosis biological_process
GO:0006886 intracellular protein transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II biological_process
GO:0050690 regulation of defense response to virus by virus biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0007411 axon guidance biological_process
GO:0016032 viral process biological_process
GO:0042059 negative regulation of epidermal growth factor receptor signaling pathway biological_process
GO:0030122 AP-2 adaptor complex cellular_component
GO:0005829 cytosol cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587424.2 False 2040 mRNA 0.43 5 6811406 6816589
XM_021587425.2 True 1926 mRNA 0.43 4 6811406 6816589

Neighbor

gene id symbol gene type direction distance location
LOC118944637 NA coding downstream 51101 6757635 ~ 6760305 (-)
LOC110507428 LOC106612376 coding downstream 106873 6694165 ~ 6704533 (-)
LOC110507427 NA coding downstream 117386 6688521 ~ 6694030 (-)
ptgir ptgir coding downstream 139246 6610446 ~ 6672160 (-)
LOC110507418 NA coding downstream 299296 6501784 ~ 6512110 (-)
tmem160 tmem160 coding upstream 169051 6985640 ~ 6988182 (-)
LOC110507058 egln2 coding upstream 175778 6992367 ~ 7028249 (-)
LOC110507438 LOC106612392 coding upstream 286922 7103511 ~ 7108254 (-)
LOC110507441 LOC106612399 coding upstream 402031 7218620 ~ 7225752 (-)
LOC110507059 dscaml1 coding upstream 435212 7182085 ~ 7411701 (-)
G2046159 NA non-coding downstream 35387 6775732 ~ 6776019 (-)
G2046156 NA non-coding downstream 43836 6767290 ~ 6767570 (-)
G2046151 NA non-coding downstream 50527 6760554 ~ 6760879 (-)
G2046148 NA non-coding downstream 57472 6753719 ~ 6753934 (-)
G2046147 NA non-coding downstream 57887 6752923 ~ 6753519 (-)
G2046639 NA non-coding upstream 43360 6859949 ~ 6907560 (-)
G2046680 NA non-coding upstream 111915 6928504 ~ 6928726 (-)
G2046694 NA non-coding upstream 118737 6935326 ~ 6935622 (-)
G2046695 NA non-coding upstream 120297 6936886 ~ 6938061 (-)
G2046697 NA non-coding upstream 122815 6939404 ~ 6939612 (-)
LOC110507421 gemin7 other downstream 320287 6489704 ~ 6491119 (-)
LOC110507410 LOC106612495 other downstream 575884 6228113 ~ 6235871 (-)
G2045223 LOC106612485 other downstream 941267 5868575 ~ 5870139 (-)
kmt2a kmt2a other downstream 1269773 5531877 ~ 5586139 (-)
fxyd6 fxyd6 other upstream 626084 7442657 ~ 7468560 (-)
G2046935 NA other upstream 689130 7505719 ~ 7510925 (-)
LOC110507449 LOC106580720 other upstream 987294 7803655 ~ 7904639 (-)

Expression


Co-expression Network