LOC110507436 (slc1a5)


Basic Information

Item Value
gene id LOC110507436
gene name slc1a5
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7088048 ~ 7101257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587427.2
ATTATGTGTTTACTTATTTGTCCCATTGGAATATTTGAATTGTGCAGTTATGGTTTAGAAAATGTCAAATTATATTGCTCCTTTTCTATTAGATTTGTACAATTATTTTGGTATTAGGACAGATGGCCTAGGTAAATGCCTTTTTGATTAGGAATGGTTGGGGGACGCCACCCACCTGCATGCAGGAGCCCGCCCCTGTGTGACGTCCTTACCAACGTGTCTTTTTCGTGGAGAGATAGCGCGGGTCGGGTTATAAATTACGCGCTAAGAGGCACAGCAACACACGGACAACCCGGGCCATTTCGCTAAAATACAAGCCCATTACTACCGCCAGGAGCTACACCAACAGGCAAACATTTTCTTCATATAAATATTTCGTTCCTTTTTTAAGGTACACTCAGGGCGCACAATGGCAGAAAACATGGAGGGGAAGGTATCCAACGGAGAAGCGCATCTTGATGAGCCGGTAGCCAACGGACTCCGCCACAAGAAGTGTTCCAACGAGACAACCGTGGAGAAAATAAAGAGGTTAGTCATGGCCAACTTGCTGGTGATTCTCACAGTGGCCGGGGTGATCATCGGGGTGTTCATCGGACTTGGTGTGCGCCACATGGAGCTGAGCAGGACACAGATCCTCTACGTGGGCTTCCCCGGCGAGCTGCTCATCCGGCTGTTGAAAATGATCATCATCCCCCTGGTGGTGTGCAGCCTGGTGTCCGGGGCGGCCAGCATCGACCCCAAAGCTCTGGGCAAGCTGGGTGGCTGGGCGATGATTTTCTTTTTGGTCACCACTTTAATTGCATCAGCCATCGGGGTGATCATGGCGTTCATCATCTCCCCCGGATCAAACACCGGCTCCAAGCCAATTTTATCGGATGACGGCGAGCTGCCCCAGGCCAAAGAAGTGGTGGACTCCTTCTTGGACCTGATCAGAAACATCTTCCCCTCCAACTTGGTGTCTGCTGCCTTTCAGTCTTACGCTACCAGTTACAAGTTTGTGACCAAGAATGTTTCTAATGGCTTGCCCAGcatcacagtggagaaggttcCCTTTGGCACAGACCAGGACGGTATGAACATCCTAGGACTGGTGGTGTTTGCCATAGTGTTTGGTGTGGCCCTGAGGAagctgggagaggagggagagatccTCATCAAGTTCTTCAACTCCTTCAACGAGGCCACCATGGTGCTGGTGTCCTGGATCATGTGgTATGCCCCCCTTGGAATCATGTTCTTGGTAGCAGGGAAGATCGTGGAGATGGAGGACGTGGGAACTCTGTTTGCCAGCCTGGGCAAGTACATCGCCTGCTGTATCGTCGGCCACGCCATCCACGGCCTGCTGGTCCTGCCGGGCATCTACTTTATCATCACCCGCAAGAACCCCTACACCTTCCTGTGGGGCATCTTCACCGCTCTGGCCACCGGCTTTGGAACCAGCTCCAGctctgccACCCTGCCCCTGATGATGAAGTGCGTGGAGGAGAACAACGGCGTGTCGAAACACATCAGTCGTTTCATCCTGCCCATCGGGGCCACGGTGAACATGGACGGTGCCGCCCTCTTCCAGTGTGTGGCGGCCGTCTTCATCGCTCAGCTCAACAACATCCCGCTCAACTTCATCCAAGTCTTCACCATCCTAGTGACAGCCACGGCGTCCAGTGTGGGAGCAGCAGGGATCCCCGCGGGGGGCGTGCTGACGCTGGCCATCATCCTGGAGGCAGTGGGACTGCCCACCAGCGACATCTCCCTCATCCTCGCCGTCGACTGGCTCGTGGACCGTACCTGCACCATTCTGAACGTGGAGGGCGACGCCTATGGAGCCGGGCTGCTGCAGTGGTACGTGGACCGCTCTGACAAGCCCAGGGAGGGGCCGGAGCTAAGCGAGGTAAAGCTGGAGGATGGCACGCCCGCCTTGCCGGAGCACTCGCCCCTCATCGAGGAGAAGGAGAGCAGCAGGGGCGCGTGCGACGAGACGGCGGCGGCTCGCGGCTCTGAGAAAGAGTCGGTCATGTAGAGTGTTCGCTGATGTGTCATCGATGACCCTCCGTTTGACCCCTCAATCATGCCAGAAAGGAGGGGAAGAGGGCCTTTTTAGACTTCCATTTAAAGACGATTCCTCTCCTTGTGTCTTCTCTCTTTCTAAGCGAGACAGAGGTCCAGGTTTGGTGGGTTGGtgggggggagaaaggagagtgtGAACAGAGGCTGTTCAGATTTGAACGGGACAGTGTTTTTGATTAAGGACTCTAGATTAGAGTCCTTTGAATGCTGCTTTGGTTCAGAAGAGCTGGCCCTGACTTCCACTCCCTTTTTAAATATTTATAACAGTAACCAGTCTTGAAAAGGCAAATATCTCCATGTCTTCTATATCATAGCCGCATGTACAGTTTGTTTCTCTGTTTATGAAGTAGCCTGCACTAATTCTCACTGTACTCTGTGAGAGTAGATGATGAAAATTCCAAAGTTATCACACAAGATCctctgtactgtatgatgtaccAAATTAAGTTGAATCCTACATTATGTTCCACTGCTGGGAGAAAGGACTTTTCTCACACAAGAACTGTGGCTCTGCTCAATGCTTCTAATCTGTAGCTGTTTTTATCCCAAACATTTCAGTCAGTCTGGGGCCAAGCACAAGAGGGTTTGCACAGTCCAAATGGAGGCTTCATGTTCTCACAGTGGTTTTACAATGTTAAAAGAATGTGTGAGAGGTGTTGcaatagagatcctattaaattactaagAGGGGAAATGTCATATCTCAAAGTTTCAGAATGGGacaaaatggcagccatcttggtcagggCGAAATCCAAAAACAGTCATgggaatgaatggcagtagaggcataggtgatgcatttcctgcttttacttaagcaggggggggggggggagtaaggCATGTGATAGATCATGAATTGTGCTATATTTGAGCTAGTGTATGGCTGTGGATCGACTGCATTGTTTGAATAGGAATGTTGGCATTTTAGCAGTTAATTTGAAAAAATGTATAGGATCATTCCTCaaactgtctggctagctagctaatagacACATGGAGTGCAGATCAATTTTTGTTTTACACTAtattatcacagcactggcaaaccatggttgaccacctccctgaccaacacGGCTGACCTTGATAAGGAGGTTAATGGCCATTCTAGTGTTTGAATTCTTAATTCTATGGGTGTTGCCCTTCCTGTTCCTTCACTAGGCTAAGAGTCGCAGTAACCTAATGTTGCATGTCCTATGTTTATTGGGGAATAGGACTTCTGGCAGACGAGTGGGAAGATAAGTGGGGGGAGTTACAGTGAGCAAGTCTGAGGCAATTTCATTTAGAGGAATACATTATGAAATTTTGATTTGTCTCTATGACAAAGGTGTATCTTTTAAAGCCAGGGGTTATTGACTGTAGGCCGTTTTATCAATTTGTGTTTATTTCACTgctctttttctcttttttgaAATGTATTTCTTCAATCAGATATACTTCAAAGCAGGCGAGGCCAGTGGCTGAGTAGGAACATACTCGTCAGCCTCTTTTTGGATCAGTTCTACTGTTTTAAATTGTCTCCAAACTGGCTTCCTTCCCTTCATCAAGTGAAGAATGTACCTTACCCAAATCATGAACCTTTTATTTGTAGACTTATTAATGTTATTTGAAAGTGTATTTTTGCTAGTTATTTGATGCTTTAATAATTTGTTGGTAATAGCTTTTTATACTCAATGTTTATCATTCTGCACAGAGCCGCTTGAAAACCTTTTGGCGAGAcagcattttattttatttaactagacaagtcagtccctatgggactcccgatcacggccggttgtgatacagcccgggatcaaacccgggtctgtagtgacacctctagcactgcaatgcagtttCACCACTTTCAATGCAGTTTTACCACTTTCAAAGCAGCAGCACCTATGGGCCAGTTACTTGTGTTCCAGTTCAACACTTACCTGCTCTGTAAACTGTTTTCCTGAGCAAAAATAAGTGACTATAAATCTACTCGCTGAGCTTATTTTTTTGGGGGAAAGTGATTTACAACGGTAAACCTTCAACAGTGAACATACAAGCAAAATGCTGCAAAAACTTTTTAGCATTCGTCTTGGCTATCTTACTGTACTAGCCAGGttgattaagcaataaggcccgggggtgtgtggtatatggccaatataccacggctaagggctgttcttaagcacgacacaacgcggagtgcctggatacagcccttagccgtggtatgttggcaatataccacaaaccccagaggtgccttattgttattataaactggttaccaacgtaattagagctgtaaaaataaatgttttgtcatgacCGTGGTATACCGtttgatataccatggctgtcagccaatcaccattcagggcttgaaccacacagtttataaaATCTCTTTTGGAACGTAATTGTCTTAAAGGGACAGCGTCCTATTTTGAGATGTAAAACAAATATTCACAATGACATACTTTTAAAGAAAATAAGGGAATGCAATTAATACTTTATTCTTTAGAACTGTTTTGTAATGGCTTGCATTGCGAAATTATATTAAACtggtttttttatacatttaataGCTGCATATAGAGAGAAAGCGTGCCAACATATGGGCTCTGCATGACCCCAGTGCATCGATTCTTTAAGGCCCAGTCAGGCCGACTGGCCTATTCGGGCCAGTGAGATAAAAGCtaataggccgtcattgtaaataagaatgggttcttaaattaactgacttgcctagttaaaggtaaaaaaataaaaaataaataaattgtgttGGACCCTGCCATAGCCTATGAATAGGGCCCAGACCATGACCCGGTTCATGAGATTAGGAAAAACTCCAGGCACCAGAAAAGACACCTATGAATTATTTTGCTACGCTACTTTTGAACCTGTGGTGCCACCTCTGATTCTGCAGCTTGTCCCCCCCTGCTGTCTCTTTATGTTTTGTGcaatgctttaaaaaaaacattccacagggtctttgtgtgtgtgtgtgtgtgtgtgtgtgtacagatgtaTGTGTGGTGATGGTGGATGTGTAGTCAGTCACCATGGTCACACGATGACATAGTTACTAGAGCTGTAGAGAACCACGGTTTTGCTCTGAAATGACTCCGTTATTTCTAgaaataaaatacttttttattAATATTCA
>TU2340782
AATTGTGCTATATTTGAGCTAGTGTATGGCTGTGGATCGACTGCATTGTTTGAATAGGAATGTTGGCATTTTAGCAGTTAATTTGAAAAAATGTATAGGATCATTCCTCaaactgtctggctagctagctaatagacACATGGAGTGCAGATCAATTTTTGTTTTACACTAtattatcacagcactggcaaaccatggttgaccacctccctgaccaacacGGCTGACCTTGATAAGGAGGTTAATGGCCATTCTAGTGTTTGAATTCTTAATTCTATGGGTGTTGCCCTTCCTGTTCCTTCACTAGGCTAAGAGTCGCAGTAACCTAATGTTGCATGTCCTATGTTTATTGGGGAATAGGACTTCTGGCAGACGAGTGGGAAGATAAGTGGGGGGAGTTACAGTGAGCAAGTCTGAGGCAATTTCATTTAGAGGAATACATTATGAAATTTTGATTTGTCTCTATGACAAAGGTGTATCTTTTAAAGCCAGGGGTTATTGACTGTAGGCCGTTTTATCAATTTGTGTTTATTTCACTgctctttttctcttttttgaAATGTATTTCTTCAATCAGATATACTTCAAAGCAGGCGAGGCCAGTGGCTGAGTAGGAACATACTCGTCAGCCTCTTTTTGGATCAGTTCTACTGTTTTAAATTGTCTCCAAACTGGCTTCCTTCCCTTCATCAAGTGAAGAATGTACCTTACCCAAATCATGAACCTTTTATTTGTAGACTTATTAATGTTATTTGATGCTTTAATAATTTGTTGGTAATAGCTTTTTATACTCAATGTTTATCATTCTGCACAGAGCCGCTTGAAAACCTTTTGGCGAGAcagcattttattttatttaactagacaagtcagtccctatgggactcccgatcacggccggttgtgatacagcccgggatcaaacccgggtctgtagtgacacctctagcactgcaatgcagtttCACCACTTTCAATGCAGTTTTACCACTTTCAAAGCAGCAGCACCTATGGGCCAGTTACTTGTGTTCCAGTTCAACACTTACCTGCTCTGTAAACTGTTTTCCTGAGCAAAAATAAGTGACTATAAATCTACTCGCTGAGCTTATTTTTTTGGGGGAAAGTGATTTACAACGGTAAACCTTCAACAGTGAACATACAAGCAAAATGCTGCAAAAACTTTTTAGCATTCGTCTTGGCTATCTTACTGTACTAGCCAGGttgattaagcaataaggcccgggggtgtgtggtatatggccaatataccacggctaagggctgttcttaagcacgacacaacgcggagtgcctggatacagcccttagccgtggtatgttggcaatataccacaaaccccagaggtgccttattgttattataaactggttaccaacgtaattagagctgtaaaaataaatgttttgtcatgacCGTGGTATACCGtttgatataccatggctgtcagccaatcaccattcagggcttgaaccacacagtttataaaATCTCTTTTGGAACGTAATTGTCTTAAAGGGACAGCGTCCTATTTTGAGATGTAAAACAAATATTCACAATGACATACTTTTAAAGAAAATAAGGGAATGCAATTAATACTTTATTCTTTAGAACTGTTTTGTAATGGCTTGCATTGCGAAATTATATTAAACtggtttttttatacatttaataGCTGCATATAGAGAGAAAGCGTGCCAACATATGGGCTCTGCATGACCCCAGTGCATCGATTCTTTAAGGCCCAGTCAGGCCGACTGGCCTATTCGGGCCAGTGAGATAAAAGCtaataggccgtcattgtaaataagaatgggttcttaaattaactgacttgcctagttaaaggtaaaaaaataaaaaataaataaattgtgttGGACCCTGCCATAGCCTATGAATAGGGCCCAGACCATGACCCGGTTCATGAGATTAGGAAAAACTCCAGGCACCAGAAAAGACACCTATGAATTATTTTGCTACGCTACTTTTGAACCTGTGGTGCCACCTCTGATTCTGCAGCTTGTCCCCCCCTGCTGTCT

Function

symbol description
slc1a5 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC1A5 (solute carrier family 1 member 5).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587427.2 False 5230 mRNA 0.46 8 7088048 7101257
TU2340782 True 2061 lncRNA 0.40 2 7098952 7101037

Neighbor

gene id symbol gene type direction distance location
LOC110507056 npas1 coding upstream 113419 6936909 ~ 6974629 (+)
arhgap35a LOC106612372 coding upstream 180459 6812849 ~ 6907589 (+)
rab4b LOC106612374 coding upstream 277012 6793919 ~ 6811036 (+)
rhoub LOC106612375 coding upstream 353856 6725669 ~ 6734192 (+)
rtn2a NA coding upstream 368784 6706664 ~ 6719264 (+)
LOC110507437 strn4 coding downstream 6708 7107965 ~ 7133262 (+)
LOC110507439 prkd2 coding downstream 34265 7135522 ~ 7183437 (+)
LOC110507440 LOC106612400 coding downstream 96193 7197450 ~ 7209528 (+)
LOC110507445 LOC106612744 coding downstream 396733 7497990 ~ 7502256 (+)
LOC110507446 LOC106612727 coding downstream 414567 7515824 ~ 7531443 (+)
G2046325 NA non-coding upstream 2885 7084688 ~ 7085163 (+)
G2046263 NA non-coding upstream 15077 7008556 ~ 7072971 (+)
G2046310 NA non-coding upstream 28530 7058748 ~ 7059518 (+)
G2046245 NA non-coding upstream 109700 6966920 ~ 6978348 (+)
G2046229 NA non-coding upstream 152784 6934960 ~ 6935264 (+)
G2046345 NA non-coding downstream 144549 7245806 ~ 7251575 (+)
G2046463 NA non-coding downstream 320365 7421622 ~ 7421912 (+)
G2046464 NA non-coding downstream 320755 7422012 ~ 7422225 (+)
G2046471 NA non-coding downstream 328284 7429541 ~ 7431697 (+)
G2046472 NA non-coding downstream 330793 7432050 ~ 7432444 (+)
G2045665 NA other upstream 367356 6719764 ~ 6720692 (+)
G2045655 NA other upstream 395004 6692544 ~ 6693044 (+)
G2045522 NA other upstream 592914 6494833 ~ 6495134 (+)
LOC110507398 znf296 other upstream 1180809 5897208 ~ 5910058 (+)
LOC110507397 sfr16 other upstream 1191935 5874691 ~ 5896127 (+)
G2046384 LOC106612398 other downstream 155374 7256631 ~ 7258230 (+)
si:cabz01090165.1 LOC106580728 other downstream 1506236 8606550 ~ 8741534 (+)
G2049339 LOC100380674 other downstream 2306368 9407625 ~ 9408571 (+)
G2049657 NA other downstream 2686549 9787806 ~ 9788115 (+)
G2046332 NA non-coding upstream 1923 7096823 ~ 7097029 (+)

Expression


Co-expression Network