LOC110507437 (strn4)


Basic Information

Item Value
gene id LOC110507437
gene name strn4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7107965 ~ 7133262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964808.1
GTCCTGGCGAAAGCGAGAGCGCTAAAATGGAGGCGGAAAGATCCGGCGGAGTAGCAGGGGGAACGAACCAGAACTCTGGAGGCAGCGGCGTGGGGCGCAATCCGAACGGGCCGAAATCGGTACTCGGGCAGGCGACGACGGAAGCGGCCGCGGCGGCATCAGCGGCCGGGGCGATGGCTGGGTCGTCGCAGCCTCGGGAACCGCAAGACGGCGACGCAGGCCTATCGCTTCCTGGGATCTTGCACTTTATCCAGTTCGAATGGGGACGCTTCCAGGCCGAGAAATATCGCTGGGAGGCCGAGAGAGACGAACTCAGGGCTCAGGTGACGTTCCTCCAGGGTGAGAGGAAGGGGCAGGAGAACATGAAGCAGGACCTGGTCAGGAGGATAAAGATGCTGGAGTACGCCCTTAAACAAgagagGTCCAAACACCAGAAGTTGAAGACAGGCAGTGACCAGAGCCCAGGGGAGAAGAAACCAGAGGCAGAACAAGTGCCCAATGGGCCAGCAGAATCTGAATCTGAGCCAGCCAATCAGATGTCCTGGAAGGAGGGCCGTCAGCTACTGCGCAAgtacctGGAGGAGGTGGGCTACTCGGACACCATCCTGGACATGCGTTCGAAGCGTGTGCGCTCCCTGCTGGGTCGTACCAGCCCCGAGGCTAACGGCGCCCCGGCCAGCAGCGAGGAGCAGCCCGCCCCGGACCCCGAGCCCCTGGCAGGGGGGGAGTCACTCCTCATCAGACAGATAGAGGAGCAGATCAAGAGgaACGCGGCGGGGAAGGATGGTTCTAAGGAGCGTCTGAGCGGTTCCGTGCTGGATAAGATCCCCTTCCTACACGGCTGccaggatgatgatgaggatgacagTGATGAGGAAGATGACTTCCAGGGCATGGGCACGGACCGTATAGATGGGCAGCGCAACAAGAACAAGAAGCCTCGCGTTAAGatggggacTGAGCCCATGACCACAGACCTGGACCCTGATGATGAGGAGGACGAAGACGACTCTGAGGATGCTCTGAGCGAGTTTGACTTCCTGGGatcaggggaggagggggagggggcggGAGAGGCCCGTATCTCAGGGGACGGCCGGGAGTTAGAGAAGCGCAGGAACAAGTTACAGGGCATGATGTCGGACTTCCCCCCCAAACCCTCCCCGCCCCCCCTCTGTGGCGCTCTGGGTTTTTCCTCTGACGTCTTCATCCTGGACGCCGTCGGGGGCGGAGACATGAACCTGGGAGAGCTGGCTGACCTCACCGTGGCCAACGACAACGACCTCACCGTGGATCTGCAGGATAACCGGGAGGAGTTCAAGAAGACGTGGAACCCTCGCTTCACGCTGCGTAGCCACTTTGATGCCATCAGAGCGTTGATGTTCCACCCCAGCCAGGCCGTTCTACTCACAGCCTCCGAGGATGGAACCCTGAAGCTGTGGAACCTCAACAAGGCCATACACTCCAAGAAAAATGCAGCGCTGGACGTTGAACCCATCTACACCTTCAGAGCCCACAGtggtgCCGTTCTGTCTCTGGCAATGGGAGAGGACGGAGACTCGTGCTACAGCGGGGGTCTGGACGGAACCGTGCGCTGCTGGAAGATCCCTGACTTTAACGTGGATCCCTACGACAACTACGACCCGGGTATAGAGAGCAATGTGTTGTTGGGTCATGAGGACTCGGTGTGGAGTCTGACGTACTCTGCTGCCCACCATCGCCTGGCCTCCTGCTCCGCAGACGGGACCGTTCGCATCTGGGACCCACAGAACTCTgccccctgtctctccgtcttcaaCAAGGAGAAAGaacaCGGAACGCCCACCTCGGTGGCCTTTGTGAACTCTGACCCCAACCAGGCAGTGGTGTCATTCGACGGCGGCGAGACGCTGCTCTATGACCTCACCACAGAGCAGAGCATCATGGTCCTGGACACCGGCACCAAGGACGGCAGTGAGCTGATTAACTGTGTGGTCAGCCACCCCTCGGAGCCCATCTCCATCACCGCACACGAGAACCGCACTATCCGCTATCTGGACAACAAGACAGGTAAACTGATCCACTCCATGGTGGCACACCTGGATGCTGTCACCTGTCTGACCACGGACCCCAAAGGCACTTACCTCATCTCTGGCAGCCATGACTGTTCGGTGCGTCTGTGGATGCTGGACAACAGGACGTGTGTGCAGGAGATCACGGCCCACAGGAAGAAGCACGACGAGGCCATTCACGACGTGGCCTTCCACCCCTCGCAGCCCTTCATCGCCTCGGCTGGCGCCGACGCACTCGCCAAGGTCTTCGTCTGAGAGGAGGCACAGACAGGGACTCAACATCATCCtcactgCCCGACTAACACAACTCGGCCAGAGGAGAGTGATGACTACAATGGACGAACCTCACACACAATTCCACATTCACAGTTACACACATACCCATCCagtgacatacacacacaaaaactgtTGTCCTGCACCCCACTGGCTGGGTCATCGCCAACAGGACACTATTAACCACAGTTCTCTAGCTGATCCCATGATGCCTCAGTAACTTGTTGCAATACTAACCATACTGCTTTTCTAACGACTAGATCGGACTGCTCGGTTTATTAGGTCAgtttactacactacaatactctCATTCATTTCTACTTTTTACAGTCCACTGGCGGTTATTATAAGACAATGTGTGTTGACTTGGATCACTACGCATGCTGATGCGGCACCTACTATGACGCGGCGCGCACCCGGGTTCACTTTCAGTTTAAAGCTTTTTGGTTTTTTAAGAGATAAGAAGCTTAGCTCACCAGTTGCTAACACACGTAAGCACCTAactacagtagagtccagtacccACCCGTTGATGGCAGTAGCAATTGTCTGCTGCACCACAGTGTGGGGGAACAATGCATTTCATTCCAAAGACTTCTGAGGgttttagtttttttgtgtgtgtgtgttttggagacGCCTCCTAACCGGTGTTGGACAAACGGCTTTAATATCAGCCTCATCGCCAAGATACGAAGTCTGAGCGTTTGTGTGTCCGGTATTGTACGGTCATCCATTTTAGTagaaaggtgtgtttgtgtgtgtgtgtgttgcacttGTTTAATCTTGGTGCTAAGACCTCATCAGTCCGAGTCTGAATCAGGGACCTGTTTTCattcgaggtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgggaggggggtccTGATTGTCTCTCACTGGGATATTTGTCATCAAAAGTAGCATGATATAGCTTGTATCGTCACTCTCCAGCCACGTCAACTGTTTGTGTTGAGATACTGTATGGGTCATTTGTATCTCATAGGAAACTAACACGCTATGCTAAGCAGACACTTTTCTACTGGTTtctttttatatatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagttttGTCATTTCATCGGGACAGCTGGTTTGTGAAAGAGTATGTGGAGATGACGGGAGTAATTTAATGTTGATGCCGCAGTAACCCCTCTGACTGAAACGGTGGACATTACCAGAAAGTGGTgtcctgtattctctctctgtcccttaaGTCGGCATCTAGTCACAACGGCCTTTGGAAACAATCTTATTGTCCAATGAAATGACTGTTGTTGATTAGGTTTCTGTTTcttgtgcggggggggggggggggggggggggttgcactGAATTGCCCAGAGTGCTCATAGTGGGAAACTGGTGCCTCTCTCCCGTGTTAACGGGGCCAGCAGGATACATTTGCCCCCAGGATATGGGAACAAAAGCCACATAAAgagccctccttcctctccctttcccctttggagaggaaacaagaacaaacactacctgaattccccccccccccaagacccAAGACCCTTTACATTGGCCTCCGACGAAGACTGAGTTTAGACAGGGCTGGTGACCGTTCACCAAGCCACCACTTTGTGCTTGGATTATTGCGGAGCTGTTTTTCCTGGAAGTGGTAACGAGGTTGGACAAAGGGCGGAGCCTTGGGCGTCTGTTAAAGACTGACAtataggtcagaggtcaggggtgaTGTCGTTGAGTAACCGGCCTCCTGCATCCTTCAAGTTTATTTTTGAACTTTCCGGGGTGGAAGATAGGCGGCGggtagtggtggggggggggggcccgaGGGCAGATCTCTGGCTGTGGAAACATGGTTCCACCAGaccagggcagagcagggcatGGCAGTAAAGATTGAATGGCCCAGTAGCTCCATGTCAATCAGTAACTGGCCCcgagctgaccccccccccaaacctaCTAATCAACCCCTAGCACATACATCAGAGGGAGGGGGTAGAACTCGTCTCAAACCACTGATACCAGATCAGGTATTTTTTCCATCCCCTTAATGGTTAAAGTCAGCATTGGGGTTAGGGTAATCTAATCCTAGATATGTGGTTAAGGTCAACTTTAACCAAGAGCGCCTACATGCAACAGGGTCGCTACAGGGGTCAGAGAATCAAAGGTTGCTGGTAAAAAAATGACTGAGAGGTCAACGTTTCTCTCCACTGCAAGACCTTCTGGGAAGCCACTCTCTCTGGTTAGACAGGTTTGTGTGGGCTTGGTTTAGTTAATGTCAGCTTCATGTGTTTGCTTTTACATGATGGTTTCAGATGCATTGAATTTGATGAGGCAGAGAGAATGCCTAAGTGCTACTTACTGTAGCACACTGGGTGCTGTCATGCGTTGTTGTTGAGAGGATAACTATAGTTCGCAGTTGTCAATCACCCAGCTGATGGTATCACCCACCTCTTGgaagtccggtggccattttttGTGTAACAGTGCATCCACTCCCACCAACGTTATAGCTTCCATACGAAGTGCATTCCAGTGACACACTAACTAACGGTTGGCTATATGCTGCATTACATCAGCTGCACTAGACCCCAAGACTAGACCAAGAGGTTACCTGGAGCCTGTTTGTGTCTTAGTGCGGCTGTGGAGCCCATGGCCCAGTTTCCCAAAAGAGTCTTAAAGAGCGACTGGCCCTAAAAAGTAGCATTGGTGTAGCATCGGTGTGAGTCAGAAGCATTTATTTtactgtcaaaattgactacaatgTGCAACTAgaataattttggtcataaagtcagtcttgtCCAAAACGGAGATTTGCGACATAGGAAAAAAATGAAAAGGAATGGAAAGTACCATAACAGTTTTCCATAGGTTGGGTTTATTTGAATCTTTCCCACAGCTGGCTGCACCCAAGTAATCATCAATTCTGAGTGCAGCTGCATCATGACCCAATGTAATGTTCatggtcaatttggtttgacTTTGAATATCCTTATGGGGCAAGTTAGGAAccatcagtaaattacacaatgtacattGGACAATATTTGAAATGTTCAAACCAACTATACAATGCAGAAAACCAACTATAAATCATATCGCAATATTGAAAGCAATTAATGAGACACCTAAAAGatgtgcaacatgaaaatattgtcccggttacattgtgtaatttattgacgtCCCAAACTATCCCCAGAGATAAGCTATCCAAAGTTAAATTAATTTTGCCACGGTGACGTACCAGCTAGCTGAAGCTAATTCGCGAAACGATTTTGACGAACTCTTCCCTCCTGCGAACACGCACAAGAGACactcacatcaaaccacaccccgacTGAATTCAGTCCTGGCCGCTAGCATTTACTAATGAACCGAATCTAAAACGAGgacaaatcaggaagtgcagttcATCGTTAGCATCTTCATAGGAGCGTCGTTAAATCGccaagctgtttcccaaaaccattacTAAAGTCGCATTTGAAATCGACTGCCTCAGAACAGCGAAGTGTGTCGTTAGAtgcttaaattattattattttatttttttaaccatcCTGGTCACTTTATACACAGATCAGAGGATGTCATCTAAACAGAATTCGAGATGTTTATCTGTCTCACTGTGAACGCAGATAACTTCAGACCGAAGTTGACTGCTAAATTGACCGCGATATGCATCAAATGAAAACCGAGTTGACTGCATTAAAAGATGGATACAGAAAATAGGTTTATAAAGGCTACATACATAGGCCTTATTTAAATCATATTGAAATCCATTtgatgttcaatcaattgagttcTATTTAGCTGGCTAGTCTGTCTGCAATTTTTGCCTCAATACATTTCATGTGTAATGTGCGCAATGATATGCCAAATCTGTGATTTGTGCATTATTATTGGTTAAGCATTAGAATAAACcacctcaatatttgcagccattAGGTGAtcatctctctaggagctgacCGGTTGCcagtattgtgaaataattatGTTAAGGTAAGATATGAATAGCGAAAGCGGCCTTTCTTTTTAACCTATAGGTATCGATCGACACATGCTCCAACGACGCACTTGGCGAACGTTCTTtctgcgtggtgttttgggaaacgcatGTTACATCTTCCGCCGTTGCAGGAACGATGCATCGGTTAAAATACTTGTACGCCTAAATTCCATCGCTACCGGGAAACCAAGCCCTGAAGTGTCTCCCTGGTATTTCTCCTCCCTTCGAGTAAATATTAAGACTGCATGAGTGTGTTGGACGAACTCTGCACTCCGTGTTTGTGTGTCAGTCAGAGTCCACATGTACGTCTGCAGCATTGAGCTACAGACTGGTCCTGATATAACGCTCAAATATGTCCCGTCTTCTGAGTACAGACAAATCAATGTGAAACAAAAAAATCAAGAAAGCAAGAGGAAAATAGATATGACTGTAAATGATAGAAGACTAGAGCAACCATTATCTGATTTACATGTCCAGTctcattttttgtttgttgcttttTCCCCCCCTTTGATTATAATTATTATCTAAGAATACTGTAGTATCATCAGTGAAATCTTTCTTATTTGCTAGGCTTAGAACTTGCTTGTGATTGATAATGACAATGTATaccttgtaaaaaaaacaacaactaaacgGTTAACAAATCAGAAGAAAAAACATCGAAAAGTGATCAGTCCGAGGCCAAGGTAAAGGACTCTTGTTtctttgtgtttttatttttttaatagcaACTTATCACTGTGTGATATTTTGTACATCATATTAAGCGGTATTCAAACAATTTCCTCTAACTACAAGGGATAAGAGACCTGctttttattgagtttgttttattatatatatttttggaacTGCATTCTAGCTTGTATCAAATTACAGATTTTCCTTCTCTTTACTTTGCGGGTCTCGTGTTGTATGTCATTaaagaagaaaaacacaaaaaattCTAATAAAATAACGATTTTGTACAGTGAA

Function

symbol description
strn4 Predicted to enable armadillo repeat domain binding activity; calmodulin binding activity; and protein phosphatase 2A binding activity. Predicted to be located in membrane. Predicted to be active in dendrite. Orthologous to human STRN4 (striatin 4).

NR:

description
striatin-4

GO: NA

KEGG:

id description
K17608 STRN1_3_4; striatin 1/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964808.1 True 7342 mRNA 0.48 18 7107965 7133262

Neighbor

gene id symbol gene type direction distance location
LOC110507436 slc1a5 coding upstream 6708 7088048 ~ 7101257 (+)
LOC110507056 npas1 coding upstream 133336 6936909 ~ 6974629 (+)
arhgap35a LOC106612372 coding upstream 200376 6812849 ~ 6907589 (+)
rab4b LOC106612374 coding upstream 296929 6793919 ~ 6811036 (+)
rhoub LOC106612375 coding upstream 373773 6725669 ~ 6734192 (+)
LOC110507439 prkd2 coding downstream 2260 7135522 ~ 7183437 (+)
LOC110507440 LOC106612400 coding downstream 64188 7197450 ~ 7209528 (+)
LOC110507445 LOC106612744 coding downstream 364728 7497990 ~ 7502256 (+)
LOC110507446 LOC106612727 coding downstream 382562 7515824 ~ 7531443 (+)
LOC110507452 LOC106580723 coding downstream 1086582 8219844 ~ 8222436 (+)
G2046332 NA non-coding upstream 10936 7096823 ~ 7097029 (+)
G2046325 NA non-coding upstream 22802 7084688 ~ 7085163 (+)
G2046263 NA non-coding upstream 34994 7008556 ~ 7072971 (+)
G2046310 NA non-coding upstream 48447 7058748 ~ 7059518 (+)
G2046345 NA non-coding downstream 112544 7245806 ~ 7251575 (+)
G2046463 NA non-coding downstream 288360 7421622 ~ 7421912 (+)
G2046464 NA non-coding downstream 288750 7422012 ~ 7422225 (+)
G2046471 NA non-coding downstream 296279 7429541 ~ 7431697 (+)
G2046472 NA non-coding downstream 298788 7432050 ~ 7432444 (+)
G2045665 NA other upstream 387273 6719764 ~ 6720692 (+)
G2045655 NA other upstream 414921 6692544 ~ 6693044 (+)
G2045522 NA other upstream 612831 6494833 ~ 6495134 (+)
LOC110507398 znf296 other upstream 1200726 5897208 ~ 5910058 (+)
LOC110507397 sfr16 other upstream 1211852 5874691 ~ 5896127 (+)
G2046384 LOC106612398 other downstream 123369 7256631 ~ 7258230 (+)
si:cabz01090165.1 LOC106580728 other downstream 1474231 8606550 ~ 8741534 (+)
G2049339 LOC100380674 other downstream 2274363 9407625 ~ 9408571 (+)
G2049657 NA other downstream 2654544 9787806 ~ 9788115 (+)

Expression


Co-expression Network