LOC110507439 (prkd2)


Basic Information

Item Value
gene id LOC110507439
gene name prkd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7135522 ~ 7183437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964809.1
ACTTCCTCCTTGGCTGTTGCAAGTTCagaaaggagggagcaggagggagagggaggtactCTCGGTCTTGCTTTTCTACAGAAAAATAGTTAACTCGGCTGAAACTGAAACAGGACAAGACTTGTTAAAGAAAAGCaccaccaggctgtctctcctttattctctcaGTTTCCTGCTCAAGGAAGCCATTTTGTACAGGCTGGAGTCTAAGGACAACAAACTTTTTCCCCCCTTCTTTCTCCTTCCTCAAGTGTTTCCTGTGAAAATTGAGACTTTCTCATCAGCAGAACAACTTCTTCACCCGAGAAGGAGGAGCGGTGGGTAGGAGGGGAGAAGTTTTTCTCAGTCTGTCCCTCACGCTTGCCTTGCCGGGATAATGAAAGAAGACGTGTGAGTGCAGATGACAAAAAAtcaagagggagagatagaaagaaagaaaagaagaaGCAGGTCTTCCTGGATAGGGATCTCCTCCTGACTCCTCTGTGAGAAGGGGTGGTCACAGGGCAGAGACTCCCAGTAGAGGTGTGTATTTGTCTGTGGATCACCGTGTCGACACCCTCGCGCTCCTGCTCTTTTGAGGGAGGTAGAGCGTGCGCGTGTGTAGCGAGGGATGGCCAACGCCAGCCCCTGTATGTCGTCGGGACCCCTACCCCAGGTCTTCTTCCACACGGGGGGCCCCTCTCCCCCAGGCTCTGTGGTGATGCAGCAGGGGACCCCCATGGCCGTGCCTCCTTCCCCTGCTCACGGTGGTCTCCCCCCTGTGGAAATGGGGGCTGGGCTGGGCCCTGGGGGGGTTGCCAATTCCTATGTGCCCCCCACCCCAGCTGGGGTCTCCTTCATCATCCAGATTGGGCTGACCAGAGAGTCAGTGCTGCTGCCCCAGACCGCTGACCTTGCCTACGTCAAACAGATCGCCTGCTCCATTGTCGACATCAAGttCCCAGAGTGCGGCTTCTATGGCATCTATGACAAGATCCTGCTATTTAAACATGACACAGGCACCAACAACATCCTGCAGCTGGTCAAGGCTCCCCAGGACATCCAGGAGGGAGACCTGGTGGAGGTGGTGCTCTCCGCTGCGGCCACCTTCGAGGACTTCCAGATTCGGCCTCATGCCCTGAACGTCCACTCGTACCGTGCCCCGGCCTTCTGCGACCACTGTGGAGAGATGCTGTTTGGACTGGTCAGACAGGGCCTCAAATGTgacgGCTGTGGACTGAACTACCACAAGCGCTGTGCCTTCAGCATCCCCAACAACTGCAGCGGCGCTCGCAAGCGGCGCCTGTCCACCACATCTCTGACCAGTAGCCCGTCACTGCGTCTGTCCACCAGCGAGTCCCTGAGCAGCGTGGGGACCAGCTCAGTCAGCACCTGCATGGAGGATGCCAGCCTGATCCGCTCTCACACCACCCAGACGCCCCCGAACTCCACCTGTACCGCGTCAGCGTCCCTGGGCCTGTCCACCAGCGCCTCCATCACCAGACCCATGGCCCGCACCAACACTCACATGCCGCGGACCCCCAGCGAGGCGCGGCGGTTCTACACGGGCCGGCCGGTGCACCTGGACAAGATCTTGATGAGCAAAGTGAAGGTGCCGCACACGTTCGCCGTGCACTCCTACACGCGCCCCACCGTGTGCCAGTACTGCAAGAGGCTGCTCCGGGGCCTCTTCCGACAAGGGCTGCAATGCAAAGACTGCAAGTTCAACTGCCACAAGCGCTGTGCGTACAAGGTTCCCAACGACTGCCTGGGGGAGACCATAGGAGacaTGTTGAGTCCCAGTGTGGACCACGAGGTGCCTATGGACTACAGCAGTGAGTATGCCGACTCAGACAAGTCTTCTCTGATGGACGATTCAGACGAGGCCTGCAGCATCCCTGGCTCTTTCTCCCCCGAGAGCAGCCAGGATGGGGTCGGCGGGGACCAGAGCGCTAACATCCCGTTGATGAGGGTGGTTCAGTCCATGAGGCAGACCACCCGTCGCTCCAGCACATCCATCAAAGAGGGCTGGGTGGTGCACTACAGCAACAAGGACACACTGAGAAAGCGGCACTACTGGCGTCTGGACTGCAAGTGCATCATCTTGTTCCagaacaacaccaccaacaagtACTATAAGGAGATCCCTCTGTCTGAGATTCTGGAGGTGCGCCCCGCAGGTGACTTCACCCTGGTCCCGCCGGGCACCAGCCCCCACTGCTTCGAGCTTGTCATGGGCACCATGCGCTACTTTGTAGGGGAGGACCCCAACGTCCACCCCCCCGCCCTGCCCCCCAACACCCCCCAGGCCTtcccccccacacccccctcccccagcaACGTGGTGCCCAATAGCGGCGTGGGGCGGGAGGTGGCCAAGGCGTGGGAGGGCGCCATTCGCCAGGCCCTCATGCCAGTCATCTTCCAGGATGCACCACCGGTAGAGGGACACACTCCTCACAGACAGGCTTCAGTCAGCATCTCAGTGTCCAACAGTGTGATCCAGGAGAACGTGGACATTGGTATGGTGTACCAGATATTTGCAGATGAAATCCTCGGCTCTGGCCAGTTTGGAGTGGTGTATGGGGGGAAGCACAGGAAGACAGGGCGCGACGTGGCGGTGAAGGTGATTGACAAGCTGCGCTTCCCCACCAAGCAGGAGAGCCAGCTGAGGAACGAGGTGGCCATACTGCAGaGTCTACGTCACCTGGGCATAGTGAACCTGGAGTGTATGTTTGAGACTCCAGAGAAGGTGTTTGTGGTGATGGAGAAGCTCCATGGAGACATGTTGGAGATGATCCTGTCCAGTGAGAAAGGACGGCTCCCAGAGAGGCTCACCAAGTTCCTCatcacacagattcTGGCAGCTCTGAGAAACCTGCACTTTAAGAACATCGTCCACTGTGATCTGAAGCCTGAGAATGTCCTGCTGGCCTCTGCCGAGCCCTTCCCCCAGgtgaaGCTGTGTGACTTTGGCTTTGCCCGTATCATTGGTGAGAAGTCGTTCAGGCGTTCGGTGGTGGGCACCCCGGCCTACCTGGCCCCAGAGGTGCTCCTCAACCAGGGCTATAACCGCTCCCTGGACATGTGGTCTGTAGGAGTCATCATGTACGTCAGCCTCAGTGGCACCTTCCCCTTCAACGAGGATGAGGACATCAACGACCAGATCCACAACGCTGCCTTCATGTACCCACCCAACCCCTGGAAACAGATCTCACCTgatgCCACTGACCTGATCAACAACCTGCTCCAGGTGAAGATGAGGAAACGCTACAGCGTGGACAAGAGCCTGAGTCACTCCTATCTACAGgacTACCAGACGTGGTTGGATCTGAGGGAGCTGGAGACCAAGCTGGGTGAGCGCTACATCACCCATGAGAGCGACGACTGCCGCTGGCAGATGTTTGCCCGCGAGCACACGCTCCCCTACCCGGCCCACCTGGTTCCCCCTCTGCCTGCGCCTGGCTCCGACGATGAGGCCGGGGAGGATGCAGACATGCAGGGACTCACCGAGAGGGTCAGCATACTCTGAGAACCTGGAGAACCAGCAGAACCAGGACCCACGAGGGCCCAAGGGACTCAAGACTGAcccagggaagaggaggggagtgtGGGGAGCgagtggagagacagaggggctggCTGGATGGATAGTTGGAGGTCTGGGGAGGGTGAGGCTGGGAGGTTTAGCTGTAGAACAGCGCCTTCTATAGACATGATCCCGCCCCTGTCCGTCTACTAATGGTGTCCCACTCTTGCCCAAGCCTGTCCAATCTCCAGACCCCATCCTTGACCACTCTCTCTTCAACCCTAGAACTCTTTGAGTTTAACAGACTGCTCTTCTATATCCCACAAGGACATACTGTATCCAGTGGTCAGGGGATGTGTAGAATATCGCTGCTGCAGTGTGCTCATTCAGTCTAAACTGCAGTATGGCAAAGGTCAGtttggatgagagagagagagagatggggatggagagggagagagacagacaaaaaaaaacattaaggACTCGATCGATCCACTAATGCGTAACTTATACCCACCCATAAACAAATCCGTATGAACCGTTCCTTTTTATTTTCATTGAATGTGATGAGTGGAATCGCCCTGCATGTGCTGTCAGACCTGTTTGCTGCAGACCAGTCATTTAGTGCCTGTGACTGGTAGATAAAAGGCTTATAACTGTAGGCAGCAGACCAGTGCTTGTGGGGTGTCATGGTCTCAGAGGAAATCTGCAGTTCAAATGACAGCAAAGAAAACAAAGCCAGAAATGGATGTAGTAATCGAAGATTGCCCCTTTTAAAACTGTCGTCTGATACAGTGGCTtacgaaagtattcacaccccttggcatttttcctattttgttgccttaaaacctggaattaaaatgattTTGGGTGGGGTTgtatataatttgatttacacaacatgcctaccactttgaaaacgcaaaatattttttattgtgcaacaagaaataagacaaaaaaaacaggacttgagcgtgcataactattcaccccactAAAGTCAAGACTTTAtagtgccaccttttgcagcaattacagctgcaagtctcttggagtatgtctctataagcttggcacatctagccactgggatatttgcccattcttcaaggcaaaactgctccagctccttcaagtt

Function

symbol description
prkd2 Predicted to enable ATP binding activity and calcium-dependent protein kinase C activity. Acts upstream of or within endocardial cushion formation. Is expressed in brain; gut; and heart. Orthologous to human PRKD2 (protein kinase D2).

NR:

description
serine/threonine-protein kinase D2-like

GO: NA

KEGG:

id description
K06070 PKD; protein kinase D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964809.1 True 4658 mRNA 0.55 18 7135522 7183437

Neighbor

gene id symbol gene type direction distance location
LOC110507437 strn4 coding upstream 2260 7107965 ~ 7133262 (+)
LOC110507436 slc1a5 coding upstream 34265 7088048 ~ 7101257 (+)
LOC110507056 npas1 coding upstream 160893 6936909 ~ 6974629 (+)
arhgap35a LOC106612372 coding upstream 227933 6812849 ~ 6907589 (+)
rab4b LOC106612374 coding upstream 324486 6793919 ~ 6811036 (+)
LOC110507440 LOC106612400 coding downstream 14013 7197450 ~ 7209528 (+)
LOC110507445 LOC106612744 coding downstream 314553 7497990 ~ 7502256 (+)
LOC110507446 LOC106612727 coding downstream 332387 7515824 ~ 7531443 (+)
LOC110507452 LOC106580723 coding downstream 1036407 8219844 ~ 8222436 (+)
LOC110507457 bl1s3 coding downstream 1104011 8287448 ~ 8292186 (+)
G2046332 NA non-coding upstream 38493 7096823 ~ 7097029 (+)
G2046325 NA non-coding upstream 50359 7084688 ~ 7085163 (+)
G2046263 NA non-coding upstream 62551 7008556 ~ 7072971 (+)
G2046345 NA non-coding downstream 62369 7245806 ~ 7251575 (+)
G2046463 NA non-coding downstream 238185 7421622 ~ 7421912 (+)
G2046464 NA non-coding downstream 238575 7422012 ~ 7422225 (+)
G2046471 NA non-coding downstream 246104 7429541 ~ 7431697 (+)
G2046472 NA non-coding downstream 248613 7432050 ~ 7432444 (+)
G2045665 NA other upstream 414830 6719764 ~ 6720692 (+)
G2045655 NA other upstream 442478 6692544 ~ 6693044 (+)
G2045522 NA other upstream 640388 6494833 ~ 6495134 (+)
LOC110507398 znf296 other upstream 1228283 5897208 ~ 5910058 (+)
LOC110507397 sfr16 other upstream 1239409 5874691 ~ 5896127 (+)
G2046384 LOC106612398 other downstream 73194 7256631 ~ 7258230 (+)
si:cabz01090165.1 LOC106580728 other downstream 1424056 8606550 ~ 8741534 (+)
G2049339 LOC100380674 other downstream 2224188 9407625 ~ 9408571 (+)
G2049657 NA other downstream 2604369 9787806 ~ 9788115 (+)

Expression


Co-expression Network