LOC110507440 (LOC106612400)


Basic Information

Item Value
gene id LOC110507440
gene name LOC106612400
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7197450 ~ 7209528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587433.2
AGGGGGCTCTAGCTGAGTCTCTACCCTCCCGCCCCCGCCCTAAAGTCATTACTTTTAAGATGCACGTGTATTCTGAAATGAAACTCCCACCCTCTTGCCCTAAACatccctcttctcttcccctctcgtgGCTGACTTattctctctccgtgtctcctcTCGTGCACTGGCTGTCTGTCTGACGTCTTGACTTCAGTGAGTGGACTAACTGCTAATGGTTGGCATTTCCCCGTCACGGAGGACGTGTACTGGGTTGAAAAACACCAGCCTGTCGGTTGTCTTCTCTCATCGGAGTGCTTCTGACTGGAGTGGTCACAGTTTTCTTCCTGTCGCCATGTGGGACTCTCACGGTCTGGCAGTACCTCAAATGTTCTGAAGCCTCCCCTCAGGCTGACTGAACGGAAATCTCCTGTGCATGAGGGTTACGGAAGGAGACAGAAGTTCTTGACCCACTGTGGAGAACCGTTGTCGACAACAAACAAAGTCCCACAACTGACAGGAACTACTCCAGTTTGGACCTGAACAAAGATGGAGAAACAGATGGATAAAACAAACTTTACTTGCGTGACAATCTCTCAAAGCCCTATCAGTGACTTCCTGATGGGCATCTACATCCTGGCCTTTATCCTGGGCTTGGCCTTTAACCTCTTGACCCTTGGCCCCATCGTCCAGCAGGTCCGCAGCCAGAACGTCCTTGGGGTATTCCTGctcaacctgtccctgtctgacATACTCTATATCCTCACCATGCCTCTCTGGATCAACTACTATCACCAGGACCACCACTGGAGCCTGGGCAGCCTGTCCTGCAGCGTGGCCGGCTTCTTCTACTACTCCAACATGTACCTTAGCATCTACCTGCTGTGCTGCATCTCTGTGGACCGCTGCCTGGCCGTCACCTACCCCCTGAGGACCAAGGCCTTCCGCAGCATACGCTACGCCTGGGTGCTGTGTCTGGTTGTGTGCGTGGCTGTCATGTCCGCACACGGCCTGGTGCTGTTCAAGGACAACCTGCAGGACGCCCACGACGACACGCAGGACCGCTGCTACGAGACCTACCCCATGCCAAAGCCCGTGGCCCTGTTCAACCTGCTGCGGGTTGGCATCGGCTTCCTGCTGCCCCTGCTGGTGCTGGGGCTGTGTTACTGGAGAATCCTGGGCCAGGTGAAGCAGAGCGAGGGGCTGGGGGAGCAGGTTAAGAGGAAGGTACGGCTGCTCTCCTTCGGGGTGATGGGGATATTCTCTGTGTGCTTCGCCCCctaccatctcctcctgctgaCCCGTTCCCTGGCCTACTACTATATGGGCAGAGAGAGGTACTGTGAGTTTGAGGAGATCATGCACTTCCCCTTCTCGTGCACTCTGGCCCTGTCCAGCCTGAACAGTGTGGTGGACCCAGTGCTGTATGTGCTGATCAGTAATGGGGTGAGGGAGGACATGAGACTGTGCTGCTGTGGGAATAGAAAGAgtcaaagggagagagacagttccGTCATCGCAGTAACATGGAAGACACATACAAACATGATCTGATTACATACAGTGTTTGtgtgcagggttgggtaggttactttctaaatgtaatcaattactagttacctgtctaaaattgtaatcagtaacgtaacttttgaaTTACCCAAACTCCCTTTctgttacttttggattactttccctttaagaggcattagaagaagacgaaaaggatccatcaaacgcatttggtgtgtcatcatagtaaTCCctgactcgctcaggtggaacaaacggATGCTTTTTCAATACTGAATTGAATACCATTGAGAAAacaacatcctttctgaatttaaaagtaatctaagaagtaatcatctagtttttcaaaagtatctgtaatctgattacaatattctTGCTGGTAACTTAATTGAATacagttacagtttttttttgtaatcagattacatgtaactgTGAGCGTGTCTGTTGTATTTATGCCCTTCCTCTACTGCAGTAAATCCCTTCCGTGCACATTGTAAAAAAAGGATGGCATGTTTGGCTGTGGGACTTCAATAACATGTTCTTTCATATCAACCCACTTCCATGGACAATCAGTCAATCAGGTTGTCCTTAAAATGTTCAAAGAACAGGACTGCAGCCTTTGTGTAGTTTTTCTAATATCCTGCTTGGTGATGAGGATGGATATTCATTCATATGCATCATGTTCTTTTTAATTGGAGCTTTCTCTTAATGCCTGTCCTCATTGGTATGGAAAATCCTTTCAAAGGCTGTCTGTTCTGGCTTTATGTTTCAGGGTCGTTCCGCTTGAAGGACCCTTGTATATCTCTTCAGGTCTGCCAGAGGTTTTTATTGATATACGCTTGGTTTACAAACGAACCTTTATATTCTAATTTGCCTGCTTTGTGGACCGAAAAATGAGAACATTGTTCAATTTCGTATTTATCCTAAACAAAATCTATGTAGTAAACAATGCTGGTGTTGAAATCCCAGAAAATACAGTATGGGACAATGAAGACATGTTGACAATGTTCATCCAATAAACAAAAAAGGAAGCTACCCACATTTGCATATGTGTTTCTTCTGTTTACACGTGCAATTCCATTATGGGTTCAAtcagttcctctctctgtccctcaagGTAAAATACAAAAAGAGAACAAA

Function

NR:

description
G-protein coupled receptor 4-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587433.2 True 2661 mRNA 0.47 2 7197450 7209528

Neighbor

gene id symbol gene type direction distance location
LOC110507439 prkd2 coding upstream 14013 7135522 ~ 7183437 (+)
LOC110507437 strn4 coding upstream 64188 7107965 ~ 7133262 (+)
LOC110507436 slc1a5 coding upstream 96193 7088048 ~ 7101257 (+)
LOC110507056 npas1 coding upstream 222821 6936909 ~ 6974629 (+)
arhgap35a LOC106612372 coding upstream 289861 6812849 ~ 6907589 (+)
LOC110507445 LOC106612744 coding downstream 288462 7497990 ~ 7502256 (+)
LOC110507446 LOC106612727 coding downstream 306296 7515824 ~ 7531443 (+)
LOC110507452 LOC106580723 coding downstream 1010316 8219844 ~ 8222436 (+)
LOC110507457 bl1s3 coding downstream 1077920 8287448 ~ 8292186 (+)
si:cabz01090165.1 LOC106580728 coding downstream 1397022 8606550 ~ 8741534 (+)
G2046332 NA non-coding upstream 100421 7096823 ~ 7097029 (+)
G2046325 NA non-coding upstream 112287 7084688 ~ 7085163 (+)
G2046263 NA non-coding upstream 124479 7008556 ~ 7072971 (+)
G2046345 NA non-coding downstream 36278 7245806 ~ 7251575 (+)
G2046463 NA non-coding downstream 212094 7421622 ~ 7421912 (+)
G2046464 NA non-coding downstream 212484 7422012 ~ 7422225 (+)
G2046471 NA non-coding downstream 220013 7429541 ~ 7431697 (+)
G2046472 NA non-coding downstream 222522 7432050 ~ 7432444 (+)
G2045665 NA other upstream 476758 6719764 ~ 6720692 (+)
G2045655 NA other upstream 504406 6692544 ~ 6693044 (+)
G2045522 NA other upstream 702316 6494833 ~ 6495134 (+)
LOC110507398 znf296 other upstream 1290211 5897208 ~ 5910058 (+)
LOC110507397 sfr16 other upstream 1301337 5874691 ~ 5896127 (+)
G2046384 LOC106612398 other downstream 47103 7256631 ~ 7258230 (+)
G2049339 LOC100380674 other downstream 2198097 9407625 ~ 9408571 (+)
G2049657 NA other downstream 2578278 9787806 ~ 9788115 (+)

Expression


Co-expression Network