LOC110507441 (LOC106612399)


Basic Information

Item Value
gene id LOC110507441
gene name LOC106612399
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7218620 ~ 7225752 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587434.2
AAGGAGGTTAGCCACATGTTTTAGGAGGGGAAATAATATAGAAATTCATGCAGGGTGTGTGATTGACATCTCTGGAGGGAGAGCgaaagggagatggagaagggagggTAGTGTGGGGACACCACACAATCTCTCTTTTCAATCACTTTTCTATATGCTCTGAGGGGAAAGTGTTCTCACTCTCTTAAGTCTATATGAGCATCTGTGGCACAGGCACTGGctgggttcagagagagagagagcgagagaggggacatgctcacagcacagggaaggagggaagagaagagagacagtcaCAGAAGTGAAGAGacgtgacagagaggagagacgcgTACTGCCTCTCAGGAAAAGCAAGGCACAGTACAAGGGAGCAGTGTACTGAGATGGATCCCATCCTGGAGGAGGTCCTGAGTGGGGCCAACACTACTGGAGGCCCCTCCCTGAACCACAGCAACAACCCCCTGGACGTGTTCTCTGGCATGCAGCTGCTGCTGCGCTTCAAGCCCCTCTTCCTGCCCCTCTACTGCCTTCTGGTGGCCGTGGCCGGCATAGGCAACTCCATCCTGCTGGCCTGTATCCTGGCCGACAAGAAGCTCCACAATGCCACCAACTTCTTCATCGGTAACCTGGCGGCCGGCGACCTGCTGATGTGTCTGACCTGTGTCCCTCTGACGGCCTCGTACGCCTTCGACAGCCGCGGCTGGGCCTTCGGACGCCCTCTCTGCCACCTGGTGCCGCTGTTGCAGGCCGCCACCGTCTTCGCCTCGGTGCTGTCCCTCACGGCCATCGCCGTGGACCGCTACGTGGTGGTGGCCCACCCAGTGAGGAGGAGGATCTCTGTCGGGGGCTGTGGCGCGGTGGCTCTGGGGGTGTGGGGGTTGTCTCTGGCCCTggctgcccctccctccctccacacgcGCTACCTGGACTTGAGGCCCCGTGGGGTGGAGCTGGTGGTGTGTGAGGAGTTCTGGCCGAGCTCTGGCCAGCTCAGGCTGCTCTACTCCTGCTGTATCCTGGTAGCCTCCTACATGATCCCTCTGCTGTCAGTCAGCGTGTCCTACTGTGCCATCACAGTGCACCTGAGACGCCACACGCTGCCCGGAGAGCCCTCACACTGCCAGCAGCGCTGGAgtcagaggaggaggaaaaccttCTCTCTCCTGGTGGCCTCTGTGCTTGCCTTTGCCCTCTGCTGGCTGCCCCTGCAGgtGCTGAACCTGCTGCTGGACCTGGACCCAGACTACCACATTGTGGACAAGCGCTATGTCAACGTGCTGCAGGTGTGCTGCCACCTGGTGGCCATGAGCTCAGCCTGCTACAACCCCTTCATCTACGCCTCTCTGCACAGTAAGGTCTGGCTGCACCTCAAGGGCTACCTGTGCCCTTACTGCCGCCAGGAGCCCCCAGGGGGCCAGCTCCTCTCCCGCTCCACCTCCCGGAACCCGGCCACCTGCCTCAGCCTGCTCTCTGAGGTCTCCGCCCCCGCCAAGGAGACCCCGGGAGTCGTCGGTCCTGACTCCGACCCCACCAATGACAGCACCCTCTGAAAACATCAGGAACCACGGTATGGTTTATAGGTAGGGGTCAAAGGTCATATACCACAGCAGCAGCCATTACATATATCTCATATACGCGTTAGAGATGACAACGGGTGTCCAGCCAGACACCCGCTGTAGGAGCAGGGGGAGAATGAGGAGAGACAGTGTGACAGGGGTTTTAGACTGCTCTGGAGACTGTCACCCCTCTGGATAGTTCGTTCTGTTTGCCTTGGGTGTCACTACATAAGCCCTGCTGCCAAAGACGATGAGCAGGTCTCCCAGCTAGTGCGAGGCAGAGAGTGTAAACACTGTCACGACCATGGGCTGGGATGCAGGTCTGGCAGCGGCAGCGGGGGAGATGACCCTTCTGTGAACTCCTCACTCTCCAAATGGATTACAAACTCAACGGAGGAGGACGGCAGGGCAAAAACAGTCTGCAAAGACAGCTCGCTCTTTTCGGTTGTTCCCTCATTCTACTATGCTTTTGAAATCTTTcatactttctctccctctttttaaTCTCTCTTTTCCGATTTATTTCAATGTATGTCGCTATAGTTTTATATTgattcctctctctttttctctgcccCCCCTTTCactatctgcccccccccccccttctctttcttttCGCCTGGGCGATATGGGACTGATTCCCCAGCCCAGTGCTAGTTTCTGTAGGTGTGTTGGAGTATCTTTGAATAGGTGTTGATCCCTGCAGTTGTCCTCTGCAGTCTCAAACCCAATCAGCTCCCTGGAACGCAATTAACCCAAAGTGAAGTGCTATCTGTTCAGTTACCAACAGTGACAATATGGCTGCCATATTAActgacaggacaggaacagcacCCAGTCTGCCAAATGTACCTCACAATTGGATTAGTTCCTTATCTGTTGCTGGTTAGCGCAGCTAGAACACAAGGGACTTTTTTTAGTCTTTGTTTTGCCACTTTCTGAACCCAGAGATACTGGCTTTGAGCCTAATCAAATGGATTCATTCCCAGAGGCCCTCTCAGGTGGTGTCTGTGACTTGGGTGTTATGCTCTGTGAAAAAGGTTAGAATGTTTTCAAAGTGAATTTCTCCTCCAAAAAAATGATGTTGCACAACGTTCTGATTTCCCAGTGTGTCGTGATACACTGGGTTTCCGAGGAGGTGTGTGTTTCTAACGGGGTTGGGCAGCGGTGTCCATGCCTGTCTTAGGGTGGTGGTTGAGACCCTAGTTTCATTCTGACAGTTCATTGGAGGTGTTAGGATGGCTTAGTTAGCCGGGGTTATTGTAGCTACCGTTCACAAGGCCCCCTGAGCACGCTGTCACTGACTCACTCTAGCAAACCACCCATAGCGTCATTCCAACAAGAACACTGGGCCGGAACGACTTTAATTGTGATAGTTATGGATGTTTGTGTTCAACCCGATTTAATCCAAACTGAATGCTGCTGTTACGTGTGagcaaaatgtgttttttcctCAATCTGCTAAATATAATAGAAAAGTCTCAGGGGTTTTGAATGAAACTCCTTTAAACAAACGGTTCATGTAGGTTGtgagtcacacatacacacatttgaaACAATTCCTCCTGCCAATGCGCATGCCCGCAGTTTCACACATCCCAGTCGCACGCACACGGTTTCTGTTCCTTCTCTGAAGAGGCACCTGTTCTACCCTACCTCTTTGTTGGCATCAGCTTGGTTTCCTGTATGCTGTTCAGGGGCCCCATGCCCATAGGGGGGCACAGGGGCACGTACCCCATTAGACTTTTCCTGTTGCTTTATTTTTCCGATGTTGCATGAATTACTGAACTTTAATTTTTTAAGCCCACATTTTAATCATAATCATTTATAATAATAAAATCTGATCTGACAGCTGTATTTTGCAGTGGGGGGCACAATGACTGGACCAGGCAAAGTGTACCCCCTTATTCTGTGGagatgaataaaaaaaaatgaattaggcaagtcagttaagaacaaattcttgtttacagtgacggcctacccccggccaaaccctggacgacgctgggccaattgtgtgctcccctatgggactcccaatcacggccggttgggatacagcctggaatttaaccagagtgtctgtagtgacgcctcaagcactgagaggcagtgccttagactgctgcaccactcgggagcccctggCAAATGGTTCCTTCCCAGGTGCATCACATAGTATAGATAGGCAGGACGCTAGATACTGTACTCTAGTGCAGCGGTATTCAATTCTTACCCTATGAGGTCCGGAGCCTACTGTTTTTTTGTTCGACCTGATAAGtaacccacctggtgtctcaggtctaaatcagtccccgattagaggggaacaatgaaaacaagaagtagagctggcttcgaggtccagatttGAGGGCTACAGTGTGTGCAGACAGTGTcgtcagtggaggaggagagagagtgtcgtGACACACACAGCAGTTGATTTGGTTGTAATGGCCAGTGATGGTTAGGACTCGCGGGGGGGTATGCTTGTAAATGAATTCGATCAAGCCATGTAGCCTATTGTTCCTTCTTGATGAATAAATAAagcaaaaatgttttgttgtttctctgtaatactagccacctagcaattgtATGAAGTTGgttttagctagccagctagatatGTTCCCAATCTCCAAACCTCTACCCAGctatttcaggctatcaatcaagttggAGTAGCTTTTCTAACTGTCTTAGCTCACATCCATTTCTatattttacccagattttagcagagatgcagaaaATAATATTTAGTTtcttaaaaaaaacaactaaaaaaacatgcttagatatgcagaatAATACGTTGTTTAAATGTAATCTGTCACCTTATGATAACATGTTATTTGTGTATTAATTATGATGCCCTGATATATGCCTGTATTGATCATGTGTGTTATCATTCCATGTACTGTGTTTGGTCATTTGGATGTAATATCCTAGGCGGCATGTTAGTGCAGTATATTGAGATGTGTGATTTACAACAGTCAGATTGACACCCTCATTAAAATTACAAATGAACAAAtgaagaggtatgcttagataacctacgcagagaaatatacatttttttttttacataaaattaGGCATAATGATTATGGATTCATTGTAGGAAAAAGCTGTGTCAAGTGTTTGAAACATgctaaatcccccccccccccccctcccgcccCATCCTCCGAGAATAATTGGTGCATGACGCACGCCCCTGATCCTGTTCGTTTGCAAATTAA

Function

NR:

description
prolactin-releasing peptide receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587434.2 True 4816 mRNA 0.50 3 7218620 7225752

Neighbor

gene id symbol gene type direction distance location
LOC110507438 LOC106612392 coding downstream 110879 7103511 ~ 7108254 (-)
LOC110507058 egln2 coding downstream 190371 6992367 ~ 7028249 (-)
tmem160 tmem160 coding downstream 230438 6985640 ~ 6988182 (-)
ap2s1 AP2S1 coding downstream 402031 6811406 ~ 6816589 (-)
LOC118944637 NA coding downstream 458315 6757635 ~ 6760305 (-)
LOC110507059 dscaml1 coding upstream 26049 7182085 ~ 7411701 (-)
LOC110507442 LOC106612730 coding upstream 210890 7436104 ~ 7442238 (-)
fxyd6 fxyd6 coding upstream 216905 7442657 ~ 7468560 (-)
LOC110507060 LOC106612728 coding upstream 244381 7470133 ~ 7483382 (-)
LOC110507447 scn4b coding upstream 305829 7531581 ~ 7569130 (-)
G2046785 NA non-coding downstream 66181 7151267 ~ 7152439 (-)
G2046754 NA non-coding downstream 115979 7102424 ~ 7102641 (-)
G2046753 NA non-coding downstream 116506 7101878 ~ 7102114 (-)
G2046688 slc1a5 non-coding downstream 121812 7096505 ~ 7096808 (-)
G2046775 NA non-coding upstream 23970 7249722 ~ 7250137 (-)
G2046922 NA non-coding upstream 196525 7422277 ~ 7422534 (-)
G2046923 NA non-coding upstream 196885 7422637 ~ 7423184 (-)
G2046958 NA non-coding upstream 286569 7512321 ~ 7512723 (-)
LOC110507418 NA other downstream 711039 6501784 ~ 6512110 (-)
LOC110507421 gemin7 other downstream 727501 6489704 ~ 6491119 (-)
LOC110507410 LOC106612495 other downstream 983098 6228113 ~ 6235871 (-)
G2045223 LOC106612485 other downstream 1348481 5868575 ~ 5870139 (-)
G2046935 NA other upstream 279967 7505719 ~ 7510925 (-)
LOC110507449 LOC106580720 other upstream 578131 7803655 ~ 7904639 (-)
LOC110507462 LOC106580732 other upstream 1622092 8839834 ~ 8852498 (-)
LOC110507062 sptbn4 other upstream 1831346 9057091 ~ 9122143 (-)

Expression


Co-expression Network