LOC110507060 (LOC106612728)


Basic Information

Item Value
gene id LOC110507060
gene name LOC106612728
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7470133 ~ 7483382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965050.1
AGACAGCGAGAGGAAAGAAGGAGTGTCAAATGTGGCGTCAGCATGCTCTGATCACTGTTCTGGGACTGTTTGAGTGGCCCTGTGAAAAGCCTCTCCTACCAGGTCTCACCTCCACTCTCCTCACTGCTCCCCCAGCGTCCGATGGCAAAGCATGACCCTAACGAGCTCCCTCCTCCATACTACTCTGTTGAGGTGCACACCCTCCCGCCCCTCCAGTCCTATGAAGAGGCAGTCTATGGAGCGGGTCCAAGGCCCACTCCTCCCAACCAGCTATACTACATCCCCCAGCACCCCCCACCAGTGGTTGCGCAACACATCTGCCAGCCCAGTATATCTCTTCCTGACAACAAGAGGAAACACAAATGCTGCCAGCATAGTGCCAAGTGCTTTGGTGGCTCAGGAGGCACCGTTCTGCTGCTCCTCCTGGCCATTGCCATCTGGCTCGGAGTGCATTACGGTACCAGGTTGGCAACTACGGCTGCCATCCTCGACCACCATGACAGTGAGGATGAGAGGCACCCTGAGAAGCAGTTGAGCGTGCCCGCTCACGACACCTGCTCCAACTCCACCGTCCAATGTGACGCTCTGCGGGACTGCCAACTGGGCACGGacgagtccagctgtgtgaggTTTGGAGCCGACGGTGCTCTTCAGGTCAGAACGTCTCAGGATGGTCGTTTTCTCCCAGTGTGTTACCAGGGATGGGACCAGAGCTACGCCAACCGAACCTGTGCCCAACTGGGCTTCAGAAAGTCCTTTGCAACCAAGGCAGTGAAGTCCCAGCAGTCAATTGGGCTAACCCTGAACAACAGATCGTCTTTACCCATCCAGGGCCAGGTCAATGTCAGCTCGTCCTGCCCAGACCAGAATACTGTCTCTCTGAAGTGTATTGATTGTGGACGTCAACAGTTGTCCTCCCGGATTATAGGGGGCAGTGTTGCCAAGCTGGGCCAATGGCCCTGGCAACTCTCTCTCCACTTTGGTGGATCACACATCTGTGGAGGGATCCTGGTGTCCCCTGACTTTGTGGTGACAGCTGCCCACTGCTTCCCCAGGTCGTTCCACCCGGTTCTTGATGCCAGTAGGTGGCGTGTGTATGGAGGAGTGGTGTCACAAGACCAGCTTCCTCCTCCCTACCTCGTCAAGAAGATCATCGTGAATGAGAACTACAACAATGTAACCAACGACCAGGACATCGCCATACTGAAGCTGGCCTCACCAGTGGACTTCACCAATGCAGTTCAGCCTGCCTGTTTGCCAGCCTTTGACCAGACATTCCCCCATGGAACAAAATGCTGGACCTCGGGATTCGGAACAACAGATGAGGGGGCAGCGAAACCCTCCAAAGACCTGATGGAGGTGGCCGTTGACATCATCGACGTGCGTGTGTGTAACAGCTCCAAGGTATACTCCGGCAGTGTTTCCAACAACATGCTGTGTGCCGGAGATCTCAACGGGGGCAGGGACTCCTGTCAGGGAGACAGTGGTGGTCCTCTGGTGTGCCAAGCCAGTGACAACCTTTGGCAGCTGGTGGGCGTGACCAGCTGGGGCACCGGCTGTGGGCAGAGTAACAGGCCGGGAGTCTACACCAAGGTGTCCAGCCTACTGCCCTGGATCTACAGCAAGATGCAGCTGGAAAGTCCGTGATGCCACTTCCTTTCCAGCGACCTCGCCGCATCCTGTCCCTAAAGACCGCTGGCGGCCTTCTTTGTCCTTCCTCTCTGAACACCGCACCATGAAGTCCTCTCAGAATGATGCTAGATTGACAGATCAAGATGGATAGATCGATGGGTGGACAGATGAAAAGATGGCCGCTAGCTAAGGGAGTAGCAGGAAAGGCATATTGCACTTTAACACAGGACCATGGTTCTTGTGTTAATCTGTTCCTTTACTGTACCTTCTAAAATCACAAAATGCATTGTGTTTACTGTAGTTATGCCCAATGGCTGCTACACTATGTAAAATATGTGAATGTAGGCCAATCCATTCTGGGCTCTGATTCCAGTGTTGTGTTTGAATGATTAGAAATCCCATCTGTTTTTCTAATCTTACGGTAAGGATATTTACCTGAGATAGGAGGGTCTAAGATGGCTGGCCTTTCTCTTTTCTAAGTCTATGCAACCCTCATATCCACTCACGCCTCCCATCTCTCCTAtgttatatttgtatttttttttaatctaatATTTTGGGGGAGACTGCACGCTTATTTCTGTTTCATCTATAAGGAATGTAGAGTGCTTTGTGATTCATCTCCAGAATTGATTTAGTGTTAGTTATGTGAAACTCATAGGAAAGAAAGGAGTATAACTACTGCAAGGGACTGTACATTGTTTATAATGAGGGATAACTGAAGAAAACCAGACCTCTCGGGAAAGCAAGATGGATGGCCCTCCCTTtagtaaaaatatatgtttacccGACCCTCCCTGAacgcttgaaaaaaaaaaacaagtgaccctccccttatacccaaaataataatgAATGACTGGAGACAAGAGGTGACTTTTATTTAATACCACAACAGAGCGTGACAACGAATGAGCGCATGCTGCAGCACCGGAGACGTTTTGATTTCTATACGGGCTATTGTTAAAAAAAACAGAGGATAGTCTAAGTTTGAAACAGTGCCAAAGTTGTCTATCAACTGTAAAAACGTGTAAAAACAACAGAACCAGATACTTCAGTTGTATCTGATCAGCAATGAATTCAAGAGAAGTACATTTGAGGTATAACACAGCAGCCGCATATCATCAGGTATGGCCTATAAACACTTGTAACACGGTATTGTTGTTACGGAATAGATTTGTGTTGACTCTGGCATaggaatataaactcagcaaaaaaaagaaacgtcctctcacggTCAACTGCGttgattttcagcaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K09643 TMPRSS13, TMPRSS11; transmembrane protease serine 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965050.1 True 2893 mRNA 0.50 13 7470133 7483382

Neighbor

gene id symbol gene type direction distance location
fxyd6 fxyd6 coding downstream 1573 7442657 ~ 7468560 (-)
LOC110507442 LOC106612730 coding downstream 27895 7436104 ~ 7442238 (-)
LOC110507059 dscaml1 coding downstream 58432 7182085 ~ 7411701 (-)
LOC110507441 LOC106612399 coding downstream 244381 7218620 ~ 7225752 (-)
LOC110507438 LOC106612392 coding downstream 362392 7103511 ~ 7108254 (-)
LOC110507447 scn4b coding upstream 48199 7531581 ~ 7569130 (-)
scn2b scn2b coding upstream 91421 7574803 ~ 7605568 (-)
LOC110507449 LOC106580720 coding upstream 320273 7803655 ~ 7904639 (-)
LOC110507451 NA coding upstream 715579 8198961 ~ 8213314 (-)
LOC110507453 LOC106580722 coding upstream 777118 8260500 ~ 8264130 (-)
G2046923 NA non-coding downstream 46949 7422637 ~ 7423184 (-)
G2046922 NA non-coding downstream 47599 7422277 ~ 7422534 (-)
G2046775 NA non-coding downstream 219996 7249722 ~ 7250137 (-)
G2046785 NA non-coding downstream 317694 7151267 ~ 7152439 (-)
G2046958 NA non-coding upstream 28939 7512321 ~ 7512723 (-)
G2046959 NA non-coding upstream 29604 7512986 ~ 7513348 (-)
G2046961 NA non-coding upstream 30389 7513771 ~ 7513982 (-)
G2046962 NA non-coding upstream 30736 7514118 ~ 7514373 (-)
LOC110507058 egln2 other downstream 441898 6992367 ~ 7028249 (-)
LOC110507418 NA other downstream 962552 6501784 ~ 6512110 (-)
LOC110507421 gemin7 other downstream 979014 6489704 ~ 6491119 (-)
G2046935 NA other upstream 22337 7505719 ~ 7510925 (-)
LOC110507462 LOC106580732 other upstream 1364462 8839834 ~ 8852498 (-)
LOC110507062 sptbn4 other upstream 1573716 9057091 ~ 9122143 (-)
LOC110507482 LOC100380674 other upstream 1935928 9407624 ~ 9430544 (-)

Expression


Co-expression Network