LOC110507445 (LOC106612744)


Basic Information

Item Value
gene id LOC110507445
gene name LOC106612744
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7497990 ~ 7502256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587445.2
GTCATATGGGGAAATAAACACACAGCCTCCTCACACTGTCACACAAATCAAACGGAACTGTGAGAGTCATGTCAACTATTGACTGTAACTGAGTAAAGTCTCCTATATCACAACAGAGGAGTCTAGCTGAGCTATCCTGTACTATCCTGTACGCCAGAAGTGTGTGGACAATATCTACAGTATGATGCTGATTATCTAAGGATCAGAGAATATATATTGGACATGGATTGGACCTTGTGGATTTCCATTCTTGCCCTCCTGATCACCTCGGACTATGTGTCAGGTAAAGACCTACTGAAGCCAGTCAATCTGACGGTGGACATATGGGACGGGGAGGTGACGTTGCTCTGGGACTCCCCTGAAGGGGCCCCGCCACTGGCTCAGTACCAGGTGCAGATGGCCAGGTATGTCAATAGTAATTGGACCAACGTGACCAGCTGTGACAGGACCCAGCTGACATATTGTGACCTGTCCTACCTTATCGGTGACTTCTTCATGGTCTACAAGGTCCGGGTTCGACTGGTCACTGAGAACAGCATCTCCGCATGGTCACGGGGGAAGAGGTTCAACCCCAGAGAAAGTAAACTGCAGCATCCCTCCAGTACACTGTTGGCCACCTCCAGTTCAGTAACAGTCCGTGTTCACAGGAAGCCATTACTAAAAAAGATCTTCCCATTTGGCCTGACTTATACTATCTACCTACAGGGAAGAGGGCAGGACAACAAGGATGTAGACAACGAGGATAAGGCGGAGTTTCGGTTTACGTCTCTTCATTGGGGACAGGAGTACTGTGTCTGCCTCAAAGTTGCAGGCAACGGAGGACAATTCACCAGTGAGGTCTCCCCTAAACAGTGCCTCCTGCTGCCAGAGCGAGAGTGGTATATCCTTGCTGTGGTGTCCTTCTCCACCCTAAGCGTGATGGGGGTCCTGGTCATGCTGGCCCTTTGCTGCTTCCTGAGGCGCCCTGAGAAAATGCCTGTTGCACTGAAATCCACAGGCAGTGGCTGGCAGCCTCTCTGTGTGGGAGATGTCCCAGTGGAGATCATCACAGACAAAGGCTGGTTCATGAGCACCGCCAGAACTGATGTCATGGTCTGGTTGGCCGACGAAAGGACTACTCTAGCAGGCAAGGGAGagcaggaagaaggagaggacagaaggaCGAGTCTGGGCAGTGGGGATTGCACTAAATCACACATTTCTGGGAATGGAAACGAAAGGAGTCCGGAAAAGCAAGAAGACAGTGGCTGTGGAAGCCTGGGAGCACCAGAGAGTGCCATCAGCAGCAGGAGTGGAACTGGAGAGCCCCCCCTGCTGGATAGGAGGAATAACATAAACATCAGCCTGAAAGAGGACAGTGGGGTGGGGCTGGGCTGCCAGTTAGGGTGTGCTGGGAGTCTACAGGGGGACGACTGTGGAATCTTGCCTGGGATGGTAATGGTCACAGGGGATGGCTACCGGAGCCAGAGTCCCTCTTCGGTGGACTCTCATTTTACTGAGACAGAGCAGAGTTTTCAACAAATCTCATGCGAAACAGTTATGGCTGATCCTGTTTTGAGATACAGGTCAGGTCACATGGCATGTGTTTGTTTAGGGGCAAGACAATGTGTTTGGTGCCAGACAAGAAGACACTGTGAGGGGAGTGTCGGTGGACAGTCTGTAGCCCTGTTTAGTTTGACAGAGGAGCAGCTAAACTGCAGCAGTCTCACAGGAGACATGTGTGAGATGGAATCTCCGTGCTCCAGCTATAAAACGAACAATCTCCACATAGAAACGGTGGTGAACTTGGAGGACTCAGTAACCTTTTCCCACCTGCCTACATGCATCGTTGAATCCTTTCCACTTCTGACGGCTTTATCAGAGTTGCCCCCGCCGGAGGGAGGACTGAACTGCAGCGTGAACACTATGCTTCCTTCTCTGGGTGATTTGGAAGTGACATTTGGTTGACATGGTCCACAAACGGAGGACACTGTGTGACACACAGAAGAGTTGGTTTAGCAATGCAGATTGTGGGGAGTCATGCGATATGTCTACAAGCCCTTTGTATGCCATTTCAAGTAAACAGTCCTTTTCCTAACTGAAAAAAGAAATCAGCAACCATAATTCTATTTGTAGTTATTTAAATATTTTCGGAGCCTTTTTTGTTACCTTTTGTGAATAAATTACCATGTTTCTTCACTTTAGTTAACTCCGAGGAGTCACTTAAAGCAGTCACTGACATTGTCAACTGTTGTTGA
>XM_021587444.2
CATATGGGGAAATAAACACACAGCCTCCTCACACTGTCACACAAATCAAACGGAACTGTGAGAGTCATGTCAACTATTGACTGTAACTGAGTAAAGTCTCCTATATCACAACAGAGGAGTCTAGCTGAGCTATCCTGTACTATCCTGTACGCCAGAAGTGTGTGGACAATATCTACAGTATGATGCTGATTATCTAAGGATCAGAGAATATATATTGGACATGGATTGGACCTTGTGGATTTCCATTCTTGCCCTCCTGATCACCTCGGACTATGTGTCAGGTAAAGACCTACTGAAGCCAGTCAATCTGACGGTGGACATATGGGACGGGGAGGTGACGTTGCTCTGGGACTCCCCTGAAGGGGCCCCGCCACTGGCTCAGTACCAGGTGCAGATGGCCAGGTATGTCAATAGTAATTGGACCAACGTGACCAGCTGTGACAGGACCCAGCTGACATATTGTGACCTGTCCTACCTTATCGGTGACTTCTTCATGGTCTACAAGGTCCGGGTTCGACTGGTCACTGAGAACAGCATCTCCGCATGGTCACGGGGGAAGAGGTTCAACCCCAGAGAAAGTAAACTGCAGCATCCCTCCAGTACACTGTTGGCCACCTCCAGTTCAGTAACAGTCCGTGTTCACAGGAAGCCATTACTAAAAAAGATCTTCCCATTTGGCCTGACTTATACTATCTACCTACAGGGAAGAGGGCAGGACAACAAGACCGTTGTCATTCAATTGAAGGATGTAGACAACGAGGATAAGGCGGAGTTTCGGTTTACGTCTCTTCATTGGGGACAGGAGTACTGTGTCTGCCTCAAAGTTGCAGGCAACGGAGGACAATTCACCAGTGAGGTCTCCCCTAAACAGTGCCTCCTGCTGCCAGAGCGAGAGTGGTATATCCTTGCTGTGGTGTCCTTCTCCACCCTAAGCGTGATGGGGGTCCTGGTCATGCTGGCCCTTTGCTGCTTCCTGAGGCGCCCTGAGAAAATGCCTGTTGCACTGAAATCCACAGGCAGTGGCTGGCAGCCTCTCTGTGTGGGAGATGTCCCAGTGGAGATCATCACAGACAAAGGCTGGTTCATGAGCACCGCCAGAACTGATGTCATGGTCTGGTTGGCCGACGAAAGGACTACTCTAGCAGGCAAGGGAGagcaggaagaaggagaggacagaaggaCGAGTCTGGGCAGTGGGGATTGCACTAAATCACACATTTCTGGGAATGGAAACGAAAGGAGTCCGGAAAAGCAAGAAGACAGTGGCTGTGGAAGCCTGGGAGCACCAGAGAGTGCCATCAGCAGCAGGAGTGGAACTGGAGAGCCCCCCCTGCTGGATAGGAGGAATAACATAAACATCAGCCTGAAAGAGGACAGTGGGGTGGGGCTGGGCTGCCAGTTAGGGTGTGCTGGGAGTCTACAGGGGGACGACTGTGGAATCTTGCCTGGGATGGTAATGGTCACAGGGGATGGCTACCGGAGCCAGAGTCCCTCTTCGGTGGACTCTCATTTTACTGAGACAGAGCAGAGTTTTCAACAAATCTCATGCGAAACAGTTATGGCTGATCCTGTTTTGAGATACAGGTCAGGTCACATGGCATGTGTTTGTTTAGGGGCAAGACAATGTGTTTGGTGCCAGACAAGAAGACACTGTGAGGGGAGTGTCGGTGGACAGTCTGTAGCCCTGTTTAGTTTGACAGAGGAGCAGCTAAACTGCAGCAGTCTCACAGGAGACATGTGTGAGATGGAATCTCCGTGCTCCAGCTATAAAACGAACAATCTCCACATAGAAACGGTGGTGAACTTGGAGGACTCAGTAACCTTTTCCCACCTGCCTACATGCATCGTTGAATCCTTTCCACTTCTGACGGCTTTATCAGAGTTGCCCCCGCCGGAGGGAGGACTGAACTGCAGCGTGAACACTATGCTTCCTTCTCTGGGTGATTTGGAAGTGACATTTGGTTGACATGGTCCACAAACGGAGGACACTGTGTGACACACAGAAGAGTTGGTTTAGCAATGCAGATTGTGGGGAGTCATGCGATATGTCTACAAGCCCTTTGTATGCCATTTCAAGTAAACAGTCCTTTTCCTAACTGAAAAAAGAAATCAGCAACCATAATTCTATTTGTAGTTATTTAAATATTTTCGGAGCCTTTTTTGTTACCTTTTGTGAATAAATTACCATGTTTCTTCACTTTAGTTAACTCCGAGGAGTCACTTAAAGCAGTCACTGACATTGTCAACTGTTGTTGA

Function

NR:

description
uncharacterized protein LOC110507445 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587445.2 False 2237 mRNA 0.49 7 7497990 7502256
XM_021587444.2 True 2256 mRNA 0.49 7 7497992 7502256

Neighbor

gene id symbol gene type direction distance location
LOC110507440 LOC106612400 coding upstream 288462 7197450 ~ 7209528 (+)
LOC110507439 prkd2 coding upstream 314553 7135522 ~ 7183437 (+)
LOC110507437 strn4 coding upstream 364728 7107965 ~ 7133262 (+)
LOC110507436 slc1a5 coding upstream 396733 7088048 ~ 7101257 (+)
LOC110507056 npas1 coding upstream 523361 6936909 ~ 6974629 (+)
LOC110507446 LOC106612727 coding downstream 13568 7515824 ~ 7531443 (+)
LOC110507452 LOC106580723 coding downstream 717588 8219844 ~ 8222436 (+)
LOC110507457 bl1s3 coding downstream 785192 8287448 ~ 8292186 (+)
si:cabz01090165.1 LOC106580728 coding downstream 1104294 8606550 ~ 8741534 (+)
LOC110507459 LOC106580729 coding downstream 1286340 8788596 ~ 8791813 (+)
G2046474 NA non-coding upstream 62468 7433976 ~ 7435522 (+)
G2046473 NA non-coding upstream 64857 7432795 ~ 7433133 (+)
G2046472 NA non-coding upstream 65546 7432050 ~ 7432444 (+)
G2046471 NA non-coding upstream 66293 7429541 ~ 7431697 (+)
G2046464 NA non-coding upstream 75765 7422012 ~ 7422225 (+)
G2046526 NA non-coding downstream 10311 7512567 ~ 7512779 (+)
G2046575 NA non-coding downstream 103779 7606035 ~ 7606235 (+)
G2046579 NA non-coding downstream 109102 7611358 ~ 7611567 (+)
G2046592 NA non-coding downstream 124980 7627236 ~ 7627632 (+)
G2046593 NA non-coding downstream 125675 7627931 ~ 7628147 (+)
G2046384 LOC106612398 other upstream 239760 7256631 ~ 7258230 (+)
G2046345 NA other upstream 246415 7245806 ~ 7251575 (+)
G2045665 NA other upstream 777298 6719764 ~ 6720692 (+)
G2045655 NA other upstream 804946 6692544 ~ 6693044 (+)
G2045522 NA other upstream 1002856 6494833 ~ 6495134 (+)
G2049339 LOC100380674 other downstream 1905369 9407625 ~ 9408571 (+)
G2049657 NA other downstream 2285550 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 2776854 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 2886745 10384807 ~ 10390951 (+)

Expression


Co-expression Network