scn2b (scn2b)


Basic Information

Item Value
gene id scn2b
gene name scn2b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7574803 ~ 7605568 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587450.2
CAACCATATAATCAACTATTTCTACAGCTACAGTCACTGCCAGCCATATCATAGCACTGAAAAAAGAACACATATTTTAAGCTTTTTTTTAAGTACAACAGAAGATTTGACGATATTTGTATTTTAATCATATAGCGTGACGTTTTACTACAAGGAGATACAATGCATTTTACATTACAAAAGCGAAATAAGACGTGGATGCCAGCTATCAACTTGAGCATCGTGGGATTGGTGGTTTATAGTATGGccTGCCCTGTGTCCAGTATGGATGTCCTGGTCCATAACCAGATCAACGTCCTGAATGGCACCATGGTGAGGATCCAGTGCATCTTCACCTCCTGCTACAAGATGGACGTCAACAAGTTTGCCATGAACTGGACCTACCAGGAGAACACCAACGAGACTGAGGAGATGttCATGACCTATAAGAAGGGGATGATGCCCCTGCGGACAGACCGGTTCAGTGACCGGGTGCAGTTTGTGGGTAACCTGGAAAAGAACGACTTGTCCATCACCCTCTCTGATGTCCAGCTGTCGGACGAGGGCGTCTATAACTGCTACGTCCGTAACCCCCCCGACCGCATCCAGGGCCACGGAATCATCAACATGTTTGTCGTCACAGAATtGCCTCCCCCGCGGGACTCGACCATAGCGGTTGCGATCGGGGCGTCAGTCGGCGGTGCGCTGGCTCTGCTCATCCTGTCCATGGTGGTGGTGAAGTGTATACGGCGTCACAAGAAACAGGAGCTCATCTCTGACGAGCagaagatggaggaagagggcaAGCTGGATGCAGAGGGGGGCCCCGAGGAGGGAACCAAGAAAGCATTCCTGCCTGAAGATGTATAGTGACCCTTGCTTGAATCCTCGTCCAGCATCTGCCTCAGCCCACGccgcctcctttccttcctctatGGGAAGCCCCAGCCACCAGCCACGCCACCCACACCACCCCTGCCTCTATCTTCAGTCAGTCTTATCTCCTATCTTCTTCGACGGGGGGCCACAAAAGGTGTAGGCGACTAGTAGACGGCAGTCTCCAAACGACATTCCTCTTTCCCCTTTTTCTCGCTTGTGGTTTAGCTTAAGATAGAGATGTAAGACCTTAATTTGATCCCCCTGTAGCAGCATAACTTTCCTACAATGCAGTATGTTTAAAATGTGTATTGTATTGgaggttttaaaaggcttctgaagttttcACTAATGGAAAATGCATCAACTCTTAGAAAAATATAAATTCACTCTAATCCACATAatcattcacatttcctgttgctgcaggactattttcctgctgtagaaaactggctcaaattaagatcctacatctgtagagtaAATGGATGGTTTGACATCCGTGATTACTGGGAAAgatcctgctctctctttctgtcactctctctctctctctctctctctctctctcgctttctctgtaTCACTCTCTTAAATTGTTGTCTTCTAACTTGCCACACCATTGGATAACAAATGATTTACTTCCAAATCATAtaattctctctcgctctcgcttgctctcgctcgctcactctctctcgctctaattTTCTTGCTCTATCACATTACTTAGCGATGCATAATGGCTGGGGCAAAAAAGTTCCCTTTTTTTCTGacagctcgtgtgtgtgtgtccaaattCTACCTTTCTGTGTGAGAATGCTGTGGGTGGATTTTTGGCTGTGTGTGTTAGTTTTTATGTACAGGGTATAAGCTGAATGACCTTCAGACGTAACTACGAGCAGTGTGGGTGTATACacatgtgtgaatatgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtatttgagaaTGTGTTTTAGTGTCCTTAGTGTCCGAGTGTCTTTCCTTCAAACTCAGAGTCTCCCTTAATGGAGAAGCCAGGCATGATTTTATCAGTAGTCAACTCTTCTGAACCCTTGCTTCAATATGATATTTTAGCCTGTGTTGCTTGCTCATACATCGAAACAACACACATGTGTATCGCTATGAATGAAGCTAGTACAATATCATACATAAGCATGGCATTTTTTTGCACACATTAAGACAGGCACAATTCTGTCTACAGTGGATGGATCGTTAATGGTCTGACATTATATACTAACTGACATTGTACAAAAAACCCAATCCCCAAATGATGTCCCCCTTTTGTCCACGTGCAGTAACCCTTACACAACACCTGAATGTCCGGCCCTAGTTGGTCGTTGACACTCAAATGAGCACACAGACACATTGACTATACGTGATCCAACACATAAGCTTCAAACACCACATACAGCCGTGTAGCTGTTTTGCACACCAGAAGTCCACACGCCGAGGCCTACACATACATAAAAGCTGAGCACTTTCAGggaaaacagaaaaaaaaagtACAATAGAGAAAAATTTATATCGGATACATATATTTATACGTTTTGACCAAATACCAAGCGGTACTCTAGAGGTGTGCTTTGATTGTTGTCGCTATTTACGTGTGGTCCTCACTGTCTTAAACTATCAATGTTGGAATGTATGAGGCCTCTCTCCTCTGAGGTAATTGATCTTGGATGTTCTTTGGATGTTACATATTTAGCTATATTAGTATTGCACTGGTTGTGAATGTATTTGGGAGACAACGTGAGATGTCCAAGTGGACGTAGCAACTACTTAATGAAATGAATATACAATCAATCATTCCACTTCTCGCACATTGAATTTGAAACTACCCTCACAGATGTAGGGCTTACGTTACATTATCACACAAGTTTTGTAATGTATGTAAGTCTGTGAAGGATCACACAAAGTATAAACTGTGGATTTGCTAAACAATATCACAACCTTAAAATagtaacatttatttattttagtgaAAATTTGTCAAATGTTACCTTCATTTGCTCCTTGTGTTTAAACGTCTTGGCTTTGTATTTTCCAACAGACAGTGTTGAGGGAGCAGATAGCCTATGGGAGTGTGACTTTAGGTTGGCAGAATATGACTGGGTGCCTCTGGTGTTGTCTGATGTGGTTTTAAGGCCTAAAGCCGGGGGCCACGCTGATTCTGTGCCCAGGAGTGCCCTACCTCATCTGGAGAcagtctgtccctgtctctgcaATGGGCACTGCGTTCATAGTCTGCCTTTACGTTATTCACTGCTGAAGCTTCTTTCTTGCACACTTTGTTTCTTATTATTTATCTCCTCAGATCCGTCCTAGTTTAGATTTCATTTGATTGAGTATTGTATTTTGACATTGTTGAATTTTGTACCACGCAGTTATGTAATTTGTACTTTATGATGTGACTTTGTGGTTGTCCTAGCTGTTGACGTTCTGGTAGCCATCATTACTTGGTCTTTGGTAAGTTGGCCTAAGTTTGGGGAGCTCACGTCTGAAAGATCATTAATTTAACAGTGGAAGGTACATGCTGATCTCCACTTGTAGGGTTTACACGCTCCCTTTCTAGAATGACTTCATTACTAATTACTATATGAATTAATTCAACTTCTGTGCAATTGTGACTGTGGTGTTAATCAGTTTGTATGGAGTCTGAGACATCAGCTAGATGCATGGTTAGAAGTCTGGGAAGCTTGTTGTCCTAACCAGAGAATATATCTCTAGGTCACAATCAGACTTAATTTCCAAAGTAATGATGGTACCTCAAGAATTAACCCCCCAAAAATTATAATTTAGattgtactgtattttatacacgaacacacacacacagacacacagtgctACCGATGGGTAGGGGACAAAGCACATGATCCGAAAACAAAAGGAAACAAAATGTGTAGCCTAATGAAATCAACATGACCTCCATTTCTCCTGTCACTCACTCTGACATCTCCGCTGGAGTCCTGAATGCTGGGTAGCTAGCTGGGATAGTAGTGGAGGTCCCGGAgtttcccctgtctgtctctgtgtgatcATGCATGTTTTTactgcagtgttcctctgtgACGCATGGCTCTAACCAGGCCCTCTCGCACCGGACACCCGAAATGCTTGCACTGCACTGTGTCTCTAAGAATGAGCTGTAATCAATATTGTATTTTGAAATAAAAATGAGTACATAAATATTA
>XR_002471125.2
CAACCATATAATCAACTATTTCTACAGCTACAGTCACTGCCAGCCATATCATAGCACTGAAAAAAGAACACATATTTTAAGCTTTTTTTTAAGTACAACAGAAGATTTGACGATATTTGTATTTTAATCATATAGCGTGACGTTTTACTACAAGGAGATACAATGCATTTTACATTACAAAAGCGAAATAAGACGTGGATGCCAGCTATCAACTTGAGCATCGTGGGATTGGTGGTTTATAGTATGGccTGCCCTGTGTCCAGTATGGATGTCCTGGTCCATAACCAGATCAACGTCCTGAATGGCACCATGGTGAGGATCCAGTGCATCTTCACCTCCTGCTACAAGATGGACGTCAACAAGTTTGCCATGAACTGGACCTACCAGGAGAACACCAACGAGACTGAGGAGATGttCATGACCTATAAGAAGGGGATGATGCCCCTGCGGACAGACCGGTTCAGTGACCGGGTGCAGTTTGTGGGTAACCTGGAAAAGAACGACTTGTCCATCACCCTCTCTGATGTCCAGCTGTCGGACGAGGGCGTCTATAACTGCTACGTCCGTAACCCCCCCGACCGCATCCAGGGCCACGGAATCATCAACATGTTTGTCGTCACAGAATtGCCTCCCCCGCGGGACTCGACCATAGCGGTTGCGATCGGGGCGTCAGTCGGCGGTGCGCTGGCTCTGCTCATCCTGTCCATGGTGGTGGTGAAGTGTATACGGCGTCACAAGAAACAGGAGCTCATCTCTGACGAGCagaagatggaggaagagggcaAGCTGGATGCAGAGGGGGGCCCCGAGGAGGGAACCAAGCAGCTATAACCGGCCTGCATGGTCCTGGAGGCCCAAGGTTCGCTGGAGCCCAACCTCCTCCCTCACGCTGGAAAGCATTCCTGCCTGAAGATGTATAGTGACCCTTGCTTGAATCCTCGTCCAGCATCTGCCTCAGCCCACGccgcctcctttccttcctctatGGGAAGCCCCAGCCACCAGCCACGCCACCCACACCACCCCTGCCTCTATCTTCAGTCAGTCTTATCTCCTATCTTCTTCGACGGGGGGCCACAAAAGGTGTAGGCGACTAGTAGACGGCAGTCTCCAAACGACATTCCTCTTTCCCCTTTTTCTCGCTTGTGGTTTAGCTTAAGATAGAGATGTAAGACCTTAATTTGATCCCCCTGTAGCAGCATAACTTTCCTACAATGCAGTATGTTTAAAATGTGTATTGTATTGgaggttttaaaaggcttctgaagttttcACTAATGGAAAATGCATCAACTCTTAGAAAAATATAAATTCACTCTAATCCACATAatcattcacatttcctgttgctgcaggactattttcctgctgtagaaaactggctcaaattaagatcctacatctgtagagtaAATGGATGGTTTGACATCCGTGATTACTGGGAAAgatcctgctctctctttctgtcactctctctctctctctctctctctctctctcgctttctctgtaTCACTCTCTTAAATTGTTGTCTTCTAACTTGCCACACCATTGGATAACAAATGATTTACTTCCAAATCATAtaattctctctcgctctcgcttgctctcgctcgctcactctctctcgctctaattTTCTTGCTCTATCACATTACTTAGCGATGCATAATGGCTGGGGCAAAAAAGTTCCCTTTTTTTCTGacagctcgtgtgtgtgtgtccaaattCTACCTTTCTGTGTGAGAATGCTGTGGGTGGATTTTTGGCTGTGTGTGTTAGTTTTTATGTACAGGGTATAAGCTGAATGACCTTCAGACGTAACTACGAGCAGTGTGGGTGTATACacatgtgtgaatatgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtatttgagaaTGTGTTTTAGTGTCCTTAGTGTCCGAGTGTCTTTCCTTCAAACTCAGAGTCTCCCTTAATGGAGAAGCCAGGCATGATTTTATCAGTAGTCAACTCTTCTGAACCCTTGCTTCAATATGATATTTTAGCCTGTGTTGCTTGCTCATACATCGAAACAACACACATGTGTATCGCTATGAATGAAGCTAGTACAATATCATACATAAGCATGGCATTTTTTTGCACACATTAAGACAGGCACAATTCTGTCTACAGTGGATGGATCGTTAATGGTCTGACATTATATACTAACTGACATTGTACAAAAAACCCAATCCCCAAATGATGTCCCCCTTTTGTCCACGTGCAGTAACCCTTACACAACACCTGAATGTCCGGCCCTAGTTGGTCGTTGACACTCAAATGAGCACACAGACACATTGACTATACGTGATCCAACACATAAGCTTCAAACACCACATACAGCCGTGTAGCTGTTTTGCACACCAGAAGTCCACACGCCGAGGCCTACACATACATAAAAGCTGAGCACTTTCAGggaaaacagaaaaaaaaagtACAATAGAGAAAAATTTATATCGGATACATATATTTATACGTTTTGACCAAATACCAAGCGGTACTCTAGAGGTGTGCTTTGATTGTTGTCGCTATTTACGTGTGGTCCTCACTGTCTTAAACTATCAATGTTGGAATGTATGAGGCCTCTCTCCTCTGAGGTAATTGATCTTGGATGTTCTTTGGATGTTACATATTTAGCTATATTAGTATTGCACTGGTTGTGAATGTATTTGGGAGACAACGTGAGATGTCCAAGTGGACGTAGCAACTACTTAATGAAATGAATATACAATCAATCATTCCACTTCTCGCACATTGAATTTGAAACTACCCTCACAGATGTAGGGCTTACGTTACATTATCACACAAGTTTTGTAATGTATGTAAGTCTGTGAAGGATCACACAAAGTATAAACTGTGGATTTGCTAAACAATATCACAACCTTAAAATagtaacatttatttattttagtgaAAATTTGTCAAATGTTACCTTCATTTGCTCCTTGTGTTTAAACGTCTTGGCTTTGTATTTTCCAACAGACAGTGTTGAGGGAGCAGATAGCCTATGGGAGTGTGACTTTAGGTTGGCAGAATATGACTGGGTGCCTCTGGTGTTGTCTGATGTGGTTTTAAGGCCTAAAGCCGGGGGCCACGCTGATTCTGTGCCCAGGAGTGCCCTACCTCATCTGGAGAcagtctgtccctgtctctgcaATGGGCACTGCGTTCATAGTCTGCCTTTACGTTATTCACTGCTGAAGCTTCTTTCTTGCACACTTTGTTTCTTATTATTTATCTCCTCAGATCCGTCCTAGTTTAGATTTCATTTGATTGAGTATTGTATTTTGACATTGTTGAATTTTGTACCACGCAGTTATGTAATTTGTACTTTATGATGTGACTTTGTGGTTGTCCTAGCTGTTGACGTTCTGGTAGCCATCATTACTTGGTCTTTGGTAAGTTGGCCTAAGTTTGGGGAGCTCACGTCTGAAAGATCATTAATTTAACAGTGGAAGGTACATGCTGATCTCCACTTGTAGGGTTTACACGCTCCCTTTCTAGAATGACTTCATTACTAATTACTATATGAATTAATTCAACTTCTGTGCAATTGTGACTGTGGTGTTAATCAGTTTGTATGGAGTCTGAGACATCAGCTAGATGCATGGTTAGAAGTCTGGGAAGCTTGTTGTCCTAACCAGAGAATATATCTCTAGGTCACAATCAGACTTAATTTCCAAAGTAATGATGGTACCTCAAGAATTAACCCCCCAAAAATTATAATTTAGattgtactgtattttatacacgaacacacacacacagacacacagtgctACCGATGGGTAGGGGACAAAGCACATGATCCGAAAACAAAAGGAAACAAAATGTGTAGCCTAATGAAATCAACATGACCTCCATTTCTCCTGTCACTCACTCTGACATCTCCGCTGGAGTCCTGAATGCTGGGTAGCTAGCTGGGATAGTAGTGGAGGTCCCGGAgtttcccctgtctgtctctgtgtgatcATGCATGTTTTTactgcagtgttcctctgtgACGCATGGCTCTAACCAGGCCCTCTCGCACCGGACACCCGAAATGCTTGCACTGCACTGTGTCTCTAAGAATGAGCTGTAATCAATATTGTATTTTGAAATAAAAATGAGTACATAAATATTA

Function

symbol description
scn2b Predicted to enable sodium channel regulator activity. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in plasma membrane. Is expressed in brain; eye; gill; heart; and liver. Human ortholog(s) of this gene implicated in familial atrial fibrillation. Orthologous to human SCN2B (sodium voltage-gated channel beta subunit 2).

NR:

description
sodium channel subunit beta-2-like

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K04846 SCN2B; voltage-gated sodium channel type II beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587450.2 False 4079 mRNA 0.43 5 7574803 7605568
XR_002471125.2 True 4150 mRNA 0.43 6 7574803 7605568

Neighbor

gene id symbol gene type direction distance location
LOC110507447 scn4b coding downstream 6958 7531581 ~ 7569130 (-)
LOC110507060 LOC106612728 coding downstream 91421 7470133 ~ 7483382 (-)
fxyd6 fxyd6 coding downstream 106243 7442657 ~ 7468560 (-)
LOC110507442 LOC106612730 coding downstream 132565 7436104 ~ 7442238 (-)
LOC110507059 dscaml1 coding downstream 163102 7182085 ~ 7411701 (-)
LOC110507449 LOC106580720 coding upstream 198087 7803655 ~ 7904639 (-)
LOC110507451 NA coding upstream 593393 8198961 ~ 8213314 (-)
LOC110507453 LOC106580722 coding upstream 654932 8260500 ~ 8264130 (-)
trappc6bl LOC106580727 coding upstream 671677 8277245 ~ 8282386 (-)
LOC110507456 LOC106580725 coding upstream 677102 8282670 ~ 8287325 (-)
G2046962 NA non-coding downstream 60430 7514118 ~ 7514373 (-)
G2046961 NA non-coding downstream 60821 7513771 ~ 7513982 (-)
G2046959 NA non-coding downstream 61455 7512986 ~ 7513348 (-)
G2046958 NA non-coding downstream 62080 7512321 ~ 7512723 (-)
G2047010 NA non-coding upstream 6101 7611669 ~ 7611907 (-)
G2047046 NA non-coding upstream 42675 7648243 ~ 7648456 (-)
G2047438 NA non-coding upstream 326744 7932312 ~ 7932632 (-)
G2047439 NA non-coding upstream 327925 7933493 ~ 7933715 (-)
G2046935 NA other downstream 63878 7505719 ~ 7510925 (-)
LOC110507058 egln2 other downstream 546568 6992367 ~ 7028249 (-)
LOC110507418 NA other downstream 1067222 6501784 ~ 6512110 (-)
LOC110507462 LOC106580732 other upstream 1242276 8839834 ~ 8852498 (-)
LOC110507062 sptbn4 other upstream 1451530 9057091 ~ 9122143 (-)
LOC110507482 LOC100380674 other upstream 1813742 9407624 ~ 9430544 (-)
G2049778 LOC106580756 other upstream 1942959 9548527 ~ 9557832 (-)

Expression


Co-expression Network