LOC110507452 (LOC106580723)



Basic Information


Item Value
gene id LOC110507452
gene name LOC106580723
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 8219844 ~ 8222436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021587455.2
gaaataaactataaaaaggGCTAGTCCTTCAGTAACAGCGCAGCGCAATCGCCCGTGTCTTGCAGCTGAAAGTGACAGGCGAACTAAAACTTTTCAACGGACAAGAATACATAGAAGCATGTCAGATATGATCGACGATATTATCACGAGGAATCTGATCAATCTGGGTTTAGCTGAACCATTCACCCAGAAACAAATTCAACCGATGGTACCTCGTCTCAACCGTTCAACTTCGTTCTTCTCACCAAAGAGCCATAGTCTAAGCTCTGAGCAATTGAACGATGATACCCCCTGGCCACTTGACATTTGGAGCAAGATGGCTCCAAGTCAACCACAGGTTTCCTTCAGACCTGACCGCTCCATGAGTCTGACCGAATCCAGTGTACTCTCCTTCGGTAAAATGAAGACCCTGGATGAAGTGCCTCCACCGCCTGGATTTCCCCCACTGAACAACCCGACACCTCTCCCTTCCAACCGTTACAAGACCGAACTGTGCCGTAGTTTCCAGGAGAACGGCAGCTGTAAATATGGGAGCAAGTGTCAGTTTGCCCATGGAGAGCCTGAGCTGCGTGGTTTGTACAGGCACCCAAAATACAAAACGGAGGCCTGCCGCACCTTTTACAACTTTGGCTACTGCCCATATGGAGCCCGCTGTCACTTCATTCATGAAGAGAAGCTCACCCCCTTAACCCAAAAGTTCCACAACCAAGCACTTGCTGATCAGAGCCCACGTCAGCTCCGTCAGAGCGTCAGTTTCGCAGGTTTCATGGGATCACGCAGCTCTCCTCCCCCTGCGCTCCACGACCCCCTTGGCTTCACCCGTGCGCCCTCGGTGTCACCACCCCCTGCGGACATTCTCTCCCCAGTGTTCAATGACACCCAACGCGACACATTTCAGTTTTGTCAGAGCCGACCCAGTGTTGGTGACATCCACAACATCCCTATGATAGTTGAGCCACAGAAGCCCTCACGCTGCGTTTGTGGCCACGGAAATAACTTCCCAGACACTCTGAACAAATCGTACGCGGAGGACCGCAACAACGTCTACATCACCCAGCAAAACCTCCACCGCTTCTCTTCTGAAGATTCCCTCTCAGATCGGGATAGTTACACCAGCACAGGCAGCACCAGCGGTTCAGAGTCCCCCACATTTGATGGGGCTGGCAACAAGCGCCTCACCGTCTTTGCGCGTCTGTCACTCTCTGACTAAGAAACCCAAACCACATAAAGACAATCCAACACCCGAACCTTGATCAATTGTGAAGGTTCTGCTTACACAAATCAGAAATCCTATCAATATGATGCGCATCAACACTTTATACTGTTTATTTATATTAGTAAATTACTTGCTCAGTGACATTTATTTGGTACTCAAACTTCTATCAAAATCtgtatattttttataattaTGTATATTTTCATTTATCTATACATCTTGTCTTCCATTAATTGCTTTCTTTAAAAATGACCTTGATGGTTATGATAGTAACAAACGTTAAGTATCTTTACCTGTCTCAATCAATAGGAGAAGGACCTAGTAGCCTTACTTCGATTAGTCCTTTAAATATATGATCATTTGAAACAAAAGACTCCCCTCCATTTAGTAAGCTGACAGAACTGTTTGTCAGGTCTGTTTATACTGTTGGTATTCATGTGTATACCAAAAACTATTCAAACCATCAATGTGACAGGGAAAATGACGACAATACATTCTCTCACTGTGATATGCACTTTAAACTAGGTATTGGGAGACTAGTCTCTCTGTAGCATTTAACCAAAGCTTTACacttcttttttaattttttttttttttacttttgccAAATTCTTTGTGTAAGAACAGTTTTTCATATTATTTTTGGACTTATTATTTTTGGACTCGTCATATTTTAACACATCTGTGACAAAAGTGAGAAGGTGCTAGTACGCCGTCTGTGTATGTCACAGATCTAGGAGGGGGTATTTGTGTAGCCTTTGCCATTTATTGAGAGAcctgttttgttccataatgtttTGACAACCCTGGTTGGGTCTTTACTCAACTGTAGTAGGTGACTTCTATttcatcagggactgtaacatcaCAGTATTTCCATAGACGATAGGTTGACTTATTTGCCTTTCTTTGCTTTTTGTAATTGTAAAGACTTAACTAATATATTTATTATGATATTTATTGTGGTAATACCAATGTATTTTGTACTTATTTATCAAGAACTTGTCAGGGTCTGTAAAAACGATGTGTGAATTATtgagaaaaaaatatgaatttattTTTGATCGCCTAAAcaagagaaataaatgaaaatgataaataaatgtaatttctt

Function


NR:

description
mRNA decay activator protein ZFP36-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021587455.2 True 2330 mRNA 0.42 2 8219844 8222436

Neighbor


gene id symbol gene type direction distance location
LOC110507446 LOC106612727 coding upstream 688401 7515824 ~ 7531443 (+)
LOC110507445 LOC106612744 coding upstream 717588 7497990 ~ 7502256 (+)
LOC110507440 LOC106612400 coding upstream 1010316 7197450 ~ 7209528 (+)
LOC110507439 prkd2 coding upstream 1036407 7135522 ~ 7183437 (+)
LOC110507437 strn4 coding upstream 1086582 7107965 ~ 7133262 (+)
LOC110507457 bl1s3 coding downstream 65012 8287448 ~ 8292186 (+)
si:cabz01090165.1 LOC106580728 coding downstream 384114 8606550 ~ 8741534 (+)
LOC110507459 LOC106580729 coding downstream 566160 8788596 ~ 8791813 (+)
LOC110507061 ltbp4 coding downstream 735970 8958406 ~ 9033108 (+)
esrrd LOC106580735 coding downstream 814532 9036968 ~ 9043679 (+)
G2047749 NA non-coding upstream 42578 8177001 ~ 8177266 (+)
G2047747 NA non-coding upstream 43801 8175816 ~ 8176043 (+)
G2047739 NA non-coding upstream 53896 8165744 ~ 8165948 (+)
G2047737 NA non-coding upstream 62788 8156746 ~ 8157056 (+)
G2047601 NA non-coding upstream 174116 8045448 ~ 8045728 (+)
G2047788 NA non-coding downstream 10394 8232830 ~ 8320784 (+)
G2048081 NA non-coding downstream 179328 8401764 ~ 8402011 (+)
G2048086 NA non-coding downstream 184459 8406895 ~ 8407118 (+)
G2048160 NA non-coding downstream 242337 8464773 ~ 8465031 (+)
G2048181 NA non-coding downstream 259636 8482072 ~ 8482296 (+)
G2046384 LOC106612398 other upstream 961614 7256631 ~ 7258230 (+)
G2046345 NA other upstream 968269 7245806 ~ 7251575 (+)
G2045665 NA other upstream 1499152 6719764 ~ 6720692 (+)
G2045655 NA other upstream 1526800 6692544 ~ 6693044 (+)
G2045522 NA other upstream 1724710 6494833 ~ 6495134 (+)
G2049339 LOC100380674 other downstream 1185189 9407625 ~ 9408571 (+)
G2049657 NA other downstream 1565370 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 2056674 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 2166565 10384807 ~ 10390951 (+)

Expression



Co-expression Network