LOC110507457 (bl1s3)


Basic Information

Item Value
gene id LOC110507457
gene name bl1s3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 8287448 ~ 8292186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965591.1
CGCAGATACTCAGATCTACACATCATCTCAATGTTCAATTTAGTCGGATTTAACAGACATCTAGGTGTACTGATTAGCGAATATGTGCGGTACTTAGTTTGGATCAACCCTAGTGAGAGAGTGTTTTGACCGACTTCCGGGTGCTCATGTGATTCTTTTTTTTTGCAGGACCAGAGGTGGTGTGGTGTAATGGCAAGTGACAAATACCAGATAGTGGTGCAAGGCGAGGCGTCAGAGACCGACTCAGATGATGAGGTATacatcacctccctctctccacattcAACAGCCGGAGGGCAAAAGGTACCAGGGGAAGCATCTGAGACTGACAGCgagggggaggttgagagagtACGTAAATGTGTCATTCCTGCAAGCTCTGAAAACCCACAAATATTACGCAAGGACTTAACTCCCCTGCTTGTGATCAGAGATAACCCTGACATTCCGTCTGCGGTAGAGGAGTTGGTTGTGTCTAGGCCTGAACACAGTGGGCTCTACTACAACACTTTACTCCAGCTGAAATTACAGGAGAGCAATGCACGTCTGTGCACGGATGTGCCCCAGACCATCAAACAGGTGTATGGTAATGCCACAAAGGAGATACGCATGGCCACAACCCACCTAAACAGCTCCCAGAACGGCATCATCAACGCCTCCCACAGCATCCGACTCATTCTGGACGACCTCAAGTCCGTCTCAGAGGAAATAGACATTATCACCAGCTGTTATCTACTCCCCGATATtaccatcccctcctctcccactacCCCTATTCTCGGACAGTGATGTgccacattcattgtttcatatgTATTATGTAGGCTAAACAATGGACTTGGGAGTATCGTTATTTGTAAAAGGCACTTGTATTAGGTGAATAAATTATACATGCCATTATACTATTACTGCTCCATGTTATTCAGATAGCTTATTCAGTGTAGTTGGCCATAAAGGATTGCTAATTGCTCTCGATCATACGTTCAAGTATTTAGCTGTTCACAAGCACATGAGATGTCTAGTCAATCTCTGTATTTTCCAATGCACCAAACCTTGTGTAGGCCTAGTGCATAGCCCACTCTTGTGGTGTCAGCAAGGCACTGCAAGGGATGCGACCGCTGTGGTCATTTTTTGCGTAGGCCTAGAGTTGAAGAAACTACAGAATCCCCATTTGCTAACGAAACAATGACAACATTGAATTCTAGGTTGTTATCATTGTGCGTTGCTGTATTCACATTTCAGTCATTGAACCGCAACTAGGCCTCTACTTTAGAGAACATTTGAAGAAATGGTTAATACAATTTAAGATACAGTGCAATCCTTCCAAAGATAAAAAAGTGTTACAAAATTGAAGATAATTTTTTTTATCCAATGGGATTCCGGGGGGTTTGATTAGCCATTATTTTTGCAGTCACTGACATTTCGGGTGAGACTGAGCATTTGGCATGGCACCCAGGAAGTGCGAACTGAAAGTGATCCATTCTCCCAAGGTCATCTGAAGGGCATGTCTGATCTcactagggctgggcggtataccgtattttactatataccggtttgggtttttactttaccttctataacggtatttttaatgtttggtttgttaaatgtgatatgctgtgtgtaacgtccatttttatagtttactccgctacttgagtcatccctccgctctctctctttccacgccgctttccacacagacctagtccCACCTCCTGTCACCTAAGGAGAGCATTTATTTTTGCTTGACCACGCGACACTTTCGTTCAGTCTgtatggtcaatgcagcacatgaacaatgttgatgacaatgatgttgtttccactttgatcttaatataaatccacatgcattctataattacaatattagtttgtgtttcttacatctgcaaacagctagttagTGTTTTCTTAGCAAGTTAAGCTAAATCGTGTTTTTTCACTAATGGTAATCGCTAGTTAGCTGGGtagtcagagcaaacgtagctagctagatCTCACTGCTGCTCCAATTAACTAGAGATGCTCCATCAAGTTGACTCCCTGTCAGCAGCTGTTGGtatttcattggcaagattaacTTTTCCATCCAGAGAACAATGCAGACATGACATTGTGTGACATATACACTcactggccagtttattaggtacaccaatcTAGTACCCGGGTCGGACCCCGCTTTGCCTCAAGAACAGACAGATGTTTTCGGACAATGGAAATGTTGCTcagttggtatcaagggaccaAATTTGTGCCATAAAAACATTTCCCACACCATTACGCCACCAGCCTGTagcgttgacaccaggcaggatggggtcAGGGACTCATGCTGCTAATGCCAAAACCTtgactgccatcagcatgacgtaACAGAACCTGGGATTTGTTggtccaggcaatgtttttccattcctcaattgtccagtgttggtgatcgcgtccCCACTGGAGttacttcttgtttttagctgaaaTGTTCCAccgggatgttggtccatgcggACGTGATGGCAtcacgcagttgctgcagattggatggCGGTACATTCATTCTGCAAACAGCCCATCCAGCTCTATTGGGTTGAAGTCTGCCCACTGCGCAGGCCACTCAAGTATTCTGAACTCGCTGTCATGTTCcagtgtttttccactcctcaattgcccagtgttggtgatcacgtgcccactggagccgcttcttgttttcagctgataggagtggaaaccggtgtggtcatctgctgcaatagcccctCCGTGACAAGGAACggcgagttgtgcgttccgagatttCGTTCTGCAACCCACTGTTATACTTtgccgttatttgtctgtttgtggcccgccagttagcttgcacgattcttgccattctccttcgacctctctctTCAACGAGCtgtttcgcccacaggactgccacagTCGCTCCATTATCGGTAACCCCTAGACATTGTCGTGTGTAAAAAGCCCAGTAGGGTgtccgtttctgagatactgggtCCGGGGCGCATGGCAtcgacgatcataccacgcttAAAGCTGTTTAGGCCTTTCTAACAGTATCTGAATGCCTGTcagcctgctttatatagcaagccacggccacatgactcactgtctgtaggaacgatgtacctaataaactggcagGTGAGTGTATTTTGAATGGTGCCATTGGACATGGTTGGTCGTCATTCTAATGGGCACCGGGGGTTAATGGAAAAGGTTATGGCGTGTGGGAAGTTACACCATTTGTGATTGCTCGCAAGGGACTGTACCGTATGCAGTCTGCTGCTATGAATGCCACGCTTGTGAGCTGAGCGCTATTAGCACACATCGCTCCTGAAACAGAACATTTCAAGGTCACTGACTTGCCATTTTTGCATGTTAACAAGTACACAATAGCAGCAGACTGAGGGAAACTGTCAAACAATTATTTTACGGGTGCATTGGGTTCTGTTGTGACTGATCTGTCTGATTTCAAAATTCATTTGATACACTGATGGACTTGGCTAAATGAGTTACGTAAATGCCATAATAATGATCTATGCATGAAACTGTATACTGACCTCCATGATACACTAGCTTAATAATTCTAACAGCATAAAGATTCTTATTTTTAACGTACCTCTTTGCAGATGTCCTCTGTGCATACTGATTACTGTTCCAATCCGCAGATGGCTTTGACTTGGCCCTGTCTCTCAGGCTGGTTCCTGCTCTAACCCAAGCCAGTTTTACTTTAATGGATTGGATCAGTTCAGACTGTGTACAGTCAACCTGGACAACACTGGAAGTCTACCTTAAGGAACCTTTCAGTCTCCAGATGATCTCTGAGCATAATTCATTGCATCCATGACGATGACTGTCACCCCTCCAGAGTTTATTATCCTTTTCATATGCACATGGTTCGCCATAAGATAAACATGAAGAGGGTTGCATTTGGTATACATGGCGTGTCATGCCTCATTTGTTAGCACCTTGACTTTCTTGGCACAGGTCTCCCAACGGACGCCTTTTTCTAGTGTCTCTGTCTCGCTTTGACCCTTTCCAGTGAACGGCACAAGGTTGTCATCAAGCCTACCCTTTTCAAATGCAGAGAACTTCCCAGCCCTGTGTTTTCCTCTCTTAATAACTTTCCACCAGTCAGACTCTAGATGGCTGTCAGTGAAGGTTTTAAAAGCTCTGCATTTGGAGTCAGGGAACATCTCAGGCTCTGAGAAAGGCATGGTGACCATCCTGTTTAGAAAGTCGTATGCGGCCTCTCGAGTGGCACAGCgttctatggcactgcatctcagtactacagacccgggttcgatcccaggctgtgtcacaaccggccgtgactgggagtc

Function

NR:

description
biogenesis of lysosome-related organelles complex 1 subunit 3-like

GO: NA

KEGG:

id description
K20186 BLOC1S3; biogenesis of lysosome-related organelles complex 1 subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965591.1 True 4373 mRNA 0.45 2 8287448 8292186

Neighbor

gene id symbol gene type direction distance location
LOC110507452 LOC106580723 coding upstream 65012 8219844 ~ 8222436 (+)
LOC110507446 LOC106612727 coding upstream 756005 7515824 ~ 7531443 (+)
LOC110507445 LOC106612744 coding upstream 785192 7497990 ~ 7502256 (+)
LOC110507440 LOC106612400 coding upstream 1077920 7197450 ~ 7209528 (+)
LOC110507439 prkd2 coding upstream 1104011 7135522 ~ 7183437 (+)
si:cabz01090165.1 LOC106580728 coding downstream 314364 8606550 ~ 8741534 (+)
LOC110507459 LOC106580729 coding downstream 496410 8788596 ~ 8791813 (+)
LOC110507061 ltbp4 coding downstream 666220 8958406 ~ 9033108 (+)
esrrd LOC106580735 coding downstream 744782 9036968 ~ 9043679 (+)
LOC110507468 blvrb coding downstream 831410 9123596 ~ 9126312 (+)
G2047749 NA non-coding upstream 110182 8177001 ~ 8177266 (+)
G2047747 NA non-coding upstream 111405 8175816 ~ 8176043 (+)
G2047739 NA non-coding upstream 121500 8165744 ~ 8165948 (+)
G2047737 NA non-coding upstream 130392 8156746 ~ 8157056 (+)
G2047601 NA non-coding upstream 241720 8045448 ~ 8045728 (+)
G2048081 NA non-coding downstream 109578 8401764 ~ 8402011 (+)
G2048086 NA non-coding downstream 114709 8406895 ~ 8407118 (+)
G2048160 NA non-coding downstream 172587 8464773 ~ 8465031 (+)
G2048181 NA non-coding downstream 189886 8482072 ~ 8482296 (+)
G2048186 NA non-coding downstream 193365 8485551 ~ 8485782 (+)
G2046384 LOC106612398 other upstream 1029218 7256631 ~ 7258230 (+)
G2046345 NA other upstream 1035873 7245806 ~ 7251575 (+)
G2045665 NA other upstream 1566756 6719764 ~ 6720692 (+)
G2045655 NA other upstream 1594404 6692544 ~ 6693044 (+)
G2045522 NA other upstream 1792314 6494833 ~ 6495134 (+)
G2049339 LOC100380674 other downstream 1115439 9407625 ~ 9408571 (+)
G2049657 NA other downstream 1495620 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 1986924 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 2096815 10384807 ~ 10390951 (+)

Expression


Co-expression Network