LOC110507459 (LOC106580729)


Basic Information

Item Value
gene id LOC110507459
gene name LOC106580729
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 8788596 ~ 8791813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587463.2
TTCCAACAGATGGCTGAGAAACTTCAGAAGCGCTTGATTAGAGCGTCTTCCTGCCTCAACACAGAACACactctactgtgaagtgggataACCTGACTGAGGCATCAGTACAATGCCATCCGACTTCCTAGCGCCGTTCTTGGAACTGGAGGATGAGTTCTGCAAGAATTTCCGTGGTCTGGACATGCCAGATGGCGCACCAGCCACCACGCAGATGCAGCGCGTCGTTGGATTTCAGCGCAGACACTCACTATGCCCGGTTACCCTACCCAACTCAAAGTTCAACAGCGGCAGTGTGGACCCAATCGGCGAGCCAGCCTGCTGGGCCCTTACTAACACTGCTAACCAGCAGTGGAGCCTGAAACACCAGCAACAGTTGCCCCGCTCTTCTCTCAACCACATCCCATTCCGTGTGGACCGTTCAGTCAGCATGATAGAGGGCCATGTTGGCAGCCTCGGGTACAGCGAGAAGCATctccccaccacccctcctctgATGCCCCCACCAGGCCTAAGTATCAGCACCAGCTGCCTGACATCTCCAAAGTCACtcgccccctcccctcccatctccaccCGGTACAAAACCGAAATGTGCCGCACTTACGAGGAGAGTGGCACATGCAAATACGGAGCCAAGTGTCAGTTTGCCCACGGCACGGATGAGCAGCGTGACTTGAGCAGGCACCCGAAGTACAAAACCGAGCCTTGCCGCACGTTCCACACCATTGGCTTCTGCCCCTATGGCGCCCGCTGTCACTTCATCCATAATGCGGACGAGCAGCTCGGGCCTGATGGCGGAGCGCCACCTCAGCGACAGAAGATGAGAGAACGCCCACAGCTGCTGCGTCACAGCATTAGTTTCGCTGGCTTCTCCTCTCCCCAAGCGCTGACCGGATTCCAACCCGTTCCAGAGACCATGCTGTTCTCCAGGGCTTCCTCAGTATCATCCCCGCCCTCCACAGGTAGCCCAGAACTGCTGTCCCCATTGTTTCCAGAACCTGCCACACTAAAGCACAACTATCCGTTCTCATCTGACTTCGGAAACGATCAGATTAATAACAACCCTCACTTTTACGCCATCACTGACTCAAAGTTCCAAACTGTCTGTGCGCAAAAGTCAGCTGCACATAACTCTCACCGCAATGCCTTCTCATTCACCGGCCTGCCTGCCATGCAGCGGTGTGCTTCACCGGACTCTCTTTCTGACCAGGAAGGCTATACCAGCTCCAGTAGCCTGAGTGGTTGTGAGTCCCCTGGCCTTGAGGGCAGACGTCTCCCCATCTTTAGTCGCCTCTCTGTCTCAGATGACTAAACTTTAAACTGGCATTCTCATCCAAACAGAGGAATTCTGCTCAGTGTTGTAAAGCTAgccaacatatatttttttaaatatcataACGTCCATGTATACTGTTGTATACCCGTTTTAGCTACTATGGGTGCCTCAACTAGCTTTACAGCATCTGTGGTGTCTTTGCTGAGAGAGTTCTGTTGGGGGATTTATTTGTACCCATTtcgaaaaaaaaaacatgtcagtaATGATACTTTTGGGCTTGGCAGAAGGACAAACCTACTGTGCACAAGTGTGCTTTTTTTACAACTTCAACGGTTCTCCTTATAGCCCTGCCCTTTAGAGTGTAACCAAAGCTGAACATAGTATCTTGTCTTGTAGGCAGAGTAAAATGTTGAAATGTATCCAAAAATgtagctaggcctactgtaaacaaAATGTAGCCTTTAGTAAAGGCAACTAATTGACAGTATTATCAGGTAGTCTAACTAtagggctttttttttttttagatgtatttattttgtatGTTTTACAGAGTTTGTTTATAATTGTGTTGTGCATTTGTATATGATGCAGAAGAACATGCTTTACTCTTCGCTTTGTTTGAGCTATCATGTAGCTTTAGAACTTTGAATTGCTTGAGTGTGGACACTACCAGAGCCATGTCCACCAGCATCGCGTTATGCCAGTGAGAAGGCAATACTAGTGTTACAAGTTACCTTGTTCAATCAGTAAATAGATGTATTGCCCTCACCGGTCATAGTTAGATGCTACATGAGGTATTTTATGTGTTCTAACACAACAAGTGCATTTCAGCGTTTAGTTTGGGTTCAACGTTTCACCATTCAAGTTCAAGTtttaaaaaaacaactgaaaCATTCATCCATTTTTGCTTACTCAGTGAGACAGGATTCTCATACACACTTTTGTGACTGTTTCTATAATATTAAAACGTGATTTGTGGTGTTACGTgaggtcatttaaaaaaaaaaacgagctGGCGCACTcacaattttttttgtttgtgtggaggtgctgactaacggcgaataaactatcaaaataaagtcGCACACTCCGAGCAATtgaatgggtatttaccaacgcttcggcatcactgtgccttcctcagggtacgtgaggtaataacatgggaaAACAATGTTGCCACAATGTATGAGTAATATGGGTTACATCGACATCTTGGTCTcttgcacaccagctgttattagACAAAGTGATGTGTATTTTATGTTACAATGAACTTGTCTTTGTGGCCCATCTTCAGCTGCGCTTTTCTTTAGCCTTAACTGTGTTGGAAAAACAAACAAGGCTTTGCATTTGTTAAATTAAAacgtatttattttgttttttcaAAGCAAAAATGATAGTGTCGGTTTTATATTATGTTGGTTTCTATATAATTTAAGTGTATTGTTTACATTCCATGGGATATGTATCCCGGTTTCTATCTtaatatatttttacctgtttggTTCAAAATAAAACGTTTGGATATCACTGTC

Function

NR:

description
mRNA decay activator protein ZFP36L1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587463.2 True 2823 mRNA 0.45 2 8788596 8791813

Neighbor

gene id symbol gene type direction distance location
si:cabz01090165.1 LOC106580728 coding upstream 47067 8606550 ~ 8741534 (+)
LOC110507457 bl1s3 coding upstream 496410 8287448 ~ 8292186 (+)
LOC110507452 LOC106580723 coding upstream 566160 8219844 ~ 8222436 (+)
LOC110507446 LOC106612727 coding upstream 1257153 7515824 ~ 7531443 (+)
LOC110507445 LOC106612744 coding upstream 1286340 7497990 ~ 7502256 (+)
LOC110507061 ltbp4 coding downstream 166593 8958406 ~ 9033108 (+)
esrrd LOC106580735 coding downstream 245155 9036968 ~ 9043679 (+)
LOC110507468 blvrb coding downstream 331783 9123596 ~ 9126312 (+)
LOC110507469 sertad3 coding downstream 336218 9128031 ~ 9130735 (+)
LOC110507063 hipk4 coding downstream 417941 9209754 ~ 9212063 (+)
G2048462 NA non-coding upstream 56471 8731798 ~ 8732125 (+)
G2048461 NA non-coding upstream 58464 8729827 ~ 8730132 (+)
G2048460 NA non-coding upstream 59961 8728410 ~ 8728635 (+)
G2048459 NA non-coding upstream 60638 8727729 ~ 8727958 (+)
G2048524 LOC106609580 non-coding downstream 16998 8808811 ~ 8809291 (+)
G2048669 NA non-coding downstream 21922 8813735 ~ 8814002 (+)
G2048683 LOC106580731 non-coding downstream 31848 8823661 ~ 8825625 (+)
G2048803 NA non-coding downstream 117508 8909321 ~ 8909563 (+)
G2048806 NA non-coding downstream 119561 8911374 ~ 8911576 (+)
G2046384 LOC106612398 other upstream 1530366 7256631 ~ 7258230 (+)
G2046345 NA other upstream 1537021 7245806 ~ 7251575 (+)
G2045665 NA other upstream 2067904 6719764 ~ 6720692 (+)
G2045655 NA other upstream 2095552 6692544 ~ 6693044 (+)
G2049339 LOC100380674 other downstream 615812 9407625 ~ 9408571 (+)
G2049657 NA other downstream 995993 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 1487297 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 1597188 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 1614560 10391240 ~ 10417311 (+)

Expression


Co-expression Network