esrrd (LOC106580735)


Basic Information

Item Value
gene id esrrd
gene name LOC106580735
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 9036968 ~ 9043679 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587471.2
TCACAGCTAAATAAACCTGCCGCTGTAACTTTGGCTCTTGTCTCAAGAGTCCTCCCTCTGTCACTATCTCTATACCGTTGGCTCCCAAACCAGGATACTAGAATACTATTACTACCTTGACACATCTCCTCGAGACTTTCTTCCTTGATATGGATCTAAAGGGTTTTTGCCTGAGTGAAAACGTCAATTTTCTCAGCCAGCACAACCACCTGTTGGTCTCCTCAAACACCGACGACGCTCCTTCACCAGATGATACATGTAACAAGACGGATCCACCCAGCCCTACCTTCGCCCTGGACAGCACCACGCCATTCAGTCCAAGCTCGGACAGCAGTGGATACAGTTTATTTTCACAGGGTCACTCGATGGACCCGGAATCCCCGAGTTCGAGCAGCAGCGGCAGCGTTGTCAGCGCAGCACCGGACACTAGCGGCGCAGCTAAATTTTGGTCGGAGCGCAGTTTGACGCTCTCGGCGCACGTTGACTCTATCCTCAAATGTGACTACCTATCGTCTCTGCGCCCTGGACCTAAAAGGCTGTGCCTAGTTTGCGGCGACTTTGCATCAGGATATCACTACGGAGTAGCGTCGTGTGAGGCATGCAAGGCTTTCTTCAAGAGGACAATTCAAGGTAACATTGACTACAGCTGCCCTGTGATGAACGATTGTGAGATCACCAAGCGTCGGAGGAAGTCGTGCCAAGCGTGCCGCTTCCAGAAGTGCCTGCGTGCCGGCATGATGAAGGAAGGTGTTCGCATGGACCGAGTCAGAGGAGGACGTCAGAAGTACAAGAGAAGGGGGGACTCTGGCCTCTCTCTTTATACGAAGGCCCCAGACACACACCCTGTCAAGTCCAACGGAAACAAAGTGATCTCCCAGCTCCTCTTGAAAGAGCCAGCCCCCCTGTGTGCCACGCCTGACAACTCAACCAATGATGACAACCTTAAAGCCCTGCTGACGCTGTGTGACCTCCTAAACAGGGAACTCCTGGTCATGATTGGCTGGTCAAAGCATATCCCAGGCTTCTCTGCCCTTTCATTGGTGGACCAGATGGCCCTGCTGCAGAGTGGTTGGATGGAGACACTGGTCTTGTCAGTGGTGTTTCAGTCTCTGGGCTATGGGGAGGAGCTGGTGTTTGCTGGGAACCTGCGTCTGGACCAGGCCCAGTGCAGAGCGGCAGGACTCTCTGACCTCTACACCGCCCTGAGACAGCTGACCACCAAGTACCAGCAGATGAACCTGAGCCAAGAGGAGGTGGTCACTCTCAAGGCTATGGCCCTCGCCAACTCCGATGCAGAGAACCTGGAGAATGCGGAGGCAGTGCAGCAGTTCCAGGACGGACTCCATGAGGCCCTGCAGGAGTACGAGAGCTCCCAGCACACAGCAGAGCTCCACCGGGCAGGCAAGCTTCTCATGACCCTTCCCCTGCTCCGGCAGACTGCCAACCGCGCCGTGGACACCTTCTGTAGACTCCACCTGGAGGGCCGCGTGCCCATGCACAAACTCTTCCTGGAGATGCTGGACGCCAAAATATGACTGTTCCACTACACCTAACCTCCCATTGGTCCCCACAAACCTTAACCAGGTGCCCCATTGAAGGGTCAGAAGTTCAGGGCTTGGTGGTTCGCAGTTTTATGACAAGCCATGGTGTCATGGAACAAGACTGACTTATAAGtcaagggctctattcaatccgtgtCGCAGGAAGTTCAACGTTAAagtgtgattgaaatttaaaggcaatgttcccgcattAGCGGCGACTGCATTCACTGTAAACTTTTGTCTATGtcagctcaatcggaaattacctttacaacGCTATCGTGCAATCTATAAAGACtgaatagtatagtatagcatattTTTGAGGTACTTTTTCAGAGGAGAGTATGTACAAATGTTTTCTTATATCATGGCGATTTTCGAGCCATGATATTCAGTCAATATGAAAGGATGTGAAAACATAATAGCACTATGGTTATTGACGATGCATTCTGGTAGCTAGAGACCACATAGCCAAATGCCTCCAAGCAGTTAGCCAGGCTGAACCAaactattagtactgctatcaTTACAAACAGCACATTCTTCTGACTTCCCTGCCTTACCATACTGTACTAAGGTGCGACgccattttgtattttatttatgtatttatttattacacGATCGCTGTACAAAGACATGAACTGCTTTCATACTAGCATGTATGCTTTTGAATAAAATGCTTTTGGAAT
>XM_021587472.2
ACCTGCCGCTGTAACTTTGGCTCTTGTCTCAAGAGTCCTCCCTCTGTCACTATCTCTATACCGTTGGCTCCCAAACCAGGATACTAGAATACTATTACTACCTTGACACATCTCCTCGAGACTTTCTTCCTTGATATGGATCTAAAGGGTTTTTGCCTGAGTGAAAACGTCAATTTTCTCAGCCAGCACAACCAGTAACATTGACTACAGCTGCCCTGTGATGAACGATTGTGAGATCACCAAGCGTCGGAGGAAGTCGTGCCAAGCGTGCCGCTTCCAGAAGTGCCTGCGTGCCGGCATGATGAAGGAAGGTGTTCGCATGGACCGAGTCAGAGGAGGACGTCAGAAGTACAAGAGAAGGGGGGACTCTGGCCTCTCTCTTTATACGAAGGCCCCAGACACACACCCTGTCAAGTCCAACGGAAACAAAGTGATCTCCCAGCTCCTCTTGAAAGAGCCAGCCCCCCTGTGTGCCACGCCTGACAACTCAACCAATGATGACAACCTTAAAGCCCTGCTGACGCTGTGTGACCTCCTAAACAGGGAACTCCTGGTCATGATTGGCTGGTCAAAGCATATCCCAGGCTTCTCTGCCCTTTCATTGGTGGACCAGATGGCCCTGCTGCAGAGTGGTTGGATGGAGACACTGGTCTTGTCAGTGGTGTTTCAGTCTCTGGGCTATGGGGAGGAGCTGGTGTTTGCTGGGAACCTGCGTCTGGACCAGGCCCAGTGCAGAGCGGCAGGACTCTCTGACCTCTACACCGCCCTGAGACAGCTGACCACCAAGTACCAGCAGATGAACCTGAGCCAAGAGGAGGTGGTCACTCTCAAGGCTATGGCCCTCGCCAACTCCGATGCAGAGAACCTGGAGAATGCGGAGGCAGTGCAGCAGTTCCAGGACGGACTCCATGAGGCCCTGCAGGAGTACGAGAGCTCCCAGCACACAGCAGAGCTCCACCGGGCAGGCAAGCTTCTCATGACCCTTCCCCTGCTCCGGCAGACTGCCAACCGCGCCGTGGACACCTTCTGTAGACTCCACCTGGAGGGCCGCGTGCCCATGCACAAACTCTTCCTGGAGATGCTGGACGCCAAAATATGACTGTTCCACTACACCTAACCTCCCATTGGTCCCCACAAACCTTAACCAGGTGCCCCATTGAAGGGTCAGAAGTTCAGGGCTTGGTGGTTCGCAGTTTTATGACAAGCCATGGTGTCATGGAACAAGACTGACTTATAAGtcaagggctctattcaatccgtgtCGCAGGAAGTTCAACGTTAAagtgtgattgaaatttaaaggcaatgttcccgcattAGCGGCGACTGCATTCACTGTAAACTTTTGTCTATGtcagctcaatcggaaattacctttacaacGCTATCGTGCAATCTATAAAGACtgaatagtatagtatagcatattTTTGAGGTACTTTTTCAGAGGAGAGTATGTACAAATGTTTTCTTATATCATGGCGATTTTCGAGCCATGATATTCAGTCAATATGAAAGGATGTGAAAACATAATAGCACTATGGTTATTGACGATGCATTCTGGTAGCTAGAGACCACATAGCCAAATGCCTCCAAGCAGTTAGCCAGGCTGAACCAaactattagtactgctatcaTTACAAACAGCACATTCTTCTGACTTCCCTGCCTTACCATACTGTACTAAGGTGCGACgccattttgtattttatttatgtatttatttattacacGATCGCTGTACAAAGACATGAACTGCTTTCATACTAGCATGTATGCTTTTGAATAAAATGCTTTTGGAAT

Function

NR:

description
estrogen-related receptor gamma-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587471.2 False 2239 mRNA 0.50 7 9036968 9043679
XM_021587472.2 True 1803 mRNA 0.49 6 9036982 9043679

Neighbor

gene id symbol gene type direction distance location
LOC110507061 ltbp4 coding upstream 3860 8958406 ~ 9033108 (+)
LOC110507459 LOC106580729 coding upstream 245155 8788596 ~ 8791813 (+)
si:cabz01090165.1 LOC106580728 coding upstream 295439 8606550 ~ 8741534 (+)
LOC110507457 bl1s3 coding upstream 744782 8287448 ~ 8292186 (+)
LOC110507452 LOC106580723 coding upstream 814532 8219844 ~ 8222436 (+)
LOC110507468 blvrb coding downstream 79917 9123596 ~ 9126312 (+)
LOC110507469 sertad3 coding downstream 84352 9128031 ~ 9130735 (+)
LOC110507063 hipk4 coding downstream 166075 9209754 ~ 9212063 (+)
LOC110507479 LOC106580747 coding downstream 228162 9271841 ~ 9273709 (+)
LOC110507484 LOC106580753 coding downstream 462806 9506485 ~ 9538992 (+)
G2048859 NA non-coding upstream 82872 8953773 ~ 8954096 (+)
G2048806 NA non-coding upstream 125392 8911374 ~ 8911576 (+)
G2048803 NA non-coding upstream 127405 8909321 ~ 8909563 (+)
G2048683 LOC106580731 non-coding upstream 211343 8823661 ~ 8825625 (+)
G2048669 NA non-coding upstream 222966 8813735 ~ 8814002 (+)
G2048924 NA non-coding downstream 24818 9068497 ~ 9068744 (+)
G2048925 sptbn4 non-coding downstream 25363 9069042 ~ 9069300 (+)
G2048926 sptbn4 non-coding downstream 26147 9069826 ~ 9070122 (+)
G2048942 sptbn4 non-coding downstream 53759 9097438 ~ 9098286 (+)
G2048957 NA non-coding downstream 78089 9121768 ~ 9122180 (+)
G2046384 LOC106612398 other upstream 1778738 7256631 ~ 7258230 (+)
G2046345 NA other upstream 1785393 7245806 ~ 7251575 (+)
G2045665 NA other upstream 2316276 6719764 ~ 6720692 (+)
G2045655 NA other upstream 2343924 6692544 ~ 6693044 (+)
G2049339 LOC100380674 other downstream 363946 9407625 ~ 9408571 (+)
G2049657 NA other downstream 744127 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 1235431 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 1345322 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 1362694 10391240 ~ 10417311 (+)

Expression


Co-expression Network