LOC110507479 (LOC106580747)


Basic Information

Item Value
gene id LOC110507479
gene name LOC106580747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 9271841 ~ 9273709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587493.2
ATTCTGGGATTTGTTGTTTTCGTTCCGGAGGGCCTTCGCGAGTATGCGCTTCGTGAACAGCATCAGTTGCGTCTAGAAAGCGAATTTTGACTGCACACAGACCATGGTTTATATTCATCAACACTCTATGTAAAAGAAGATATATTTACCGATATGCGGAGCCCAGATCATCGCGAACCGAGCTAGATTTAGTGTATCCAGGTCAAAGGTACTATATATGTTTTTGGAACAAAACATGTTGATGCAGGCATGCGCTTTTAGTTAGACTAAGTTAAATTTAGTCATTTATCAGTACTCCGAGATCATGCCAAATGAGGTATCTTCATCAAGCGATGATTCAAGTGACACGGAGGAGGTTCCGCAAAAACGGAGAAAGCAGGCTTCAAGGTATCAGTGTCCAGCTGATTTTGTGGCATTTACCCACAAACCCTGTGCCAGTACCCTCATCGAAAGGCTTCGTGATGACAACACAGAATTATGGCTAATCAAAGCTCCCAGCGGTTTCAACCCGGACAGttTCAGCAGTCTGAAAATGCCTCTGTCTGGGCTGCAGACCATGCAGGCCCCTGCCCAGCAGGCGCGGGGCAGTGGTGGGAATTCCGGGCAGATCTATAGCGTGCTGGGTGGGCCCTCTGGTGCCGCGGACCTCCACCTCCTCACCAGCCACCGCCAGAGGCTCGACTCGGTGGTCTGTGCCCCGACCTTCAGCGGCCTCCTCAACATCTGTGAGAGCTACGGCGACTGCAGCACCAACCAGACCACCATAGCCATCCCAGCCACCCCGGCCCCCACCGTGCCCCCGGGGCTCCGCCTGCGCTTCCAGCCTTTCGGAAGCAGGACCCCCACCCTCTCCAGAGTGATGGAGGATACACCGGATACTCCGCTGCCGTCTTCACGAGAGACGCCTCTCAGGGTCACACTGGAcccgggggaggagaggaagagcaagaagaaaaagaagaaagacAAACTTATAaagactgaggaggaggaggaggtcagggTGAAGCAGGAGCTGCTACACATGAGCCCAGAGGAGTCCTATGAACTTCCTGGGCAGGAAGCTGACCtctcagaggagaagaggaggaggaagaagaagaagaagaagaaggacagaggagaggcagagggtaCTGTAGATTTGTCTTTTAATGTTATTAAACAAGAGGTGGAAGTAAAAGTTGAACCAATGGACAGTTCCTATGGTGACGTTGAAGATTCTGGAAAAAAGAAAAAGATAAAGAAAAACTAGCACGACGATGACGAGTCTGTTGTTTTTACCCGTCATCTGGTTTTGTGAAGTTATGCTATGATATAATTGTATTATTCAATTAGGCACTTCAACAAATAATTATTATGCTACTGTACTGTCATTTTGATTTTTTGGGGAGAAATGTTATTGTCTAATAAAACCAGTGTTCAGA

Function

NR:

description
DNA-directed RNA polymerase I subunit RPA34-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587493.2 True 1427 mRNA 0.49 3 9271841 9273709

Neighbor

gene id symbol gene type direction distance location
LOC110507063 hipk4 coding upstream 59778 9209754 ~ 9212063 (+)
LOC110507469 sertad3 coding upstream 141106 9128031 ~ 9130735 (+)
LOC110507468 blvrb coding upstream 145529 9123596 ~ 9126312 (+)
esrrd LOC106580735 coding upstream 228162 9036968 ~ 9043679 (+)
LOC110507061 ltbp4 coding upstream 238733 8958406 ~ 9033108 (+)
LOC110507484 LOC106580753 coding downstream 232776 9506485 ~ 9538992 (+)
LOC110507488 LOC106580752 coding downstream 323447 9597156 ~ 9619474 (+)
LOC110507489 LOC106580757 coding downstream 351205 9624914 ~ 9640110 (+)
LOC110507491 LOC106580758 coding downstream 372978 9646687 ~ 9658211 (+)
capn4 LOC106580760 coding downstream 397055 9670764 ~ 9677392 (+)
G2049132 NA non-coding upstream 13434 9258033 ~ 9258407 (+)
G2049107 NA non-coding upstream 17786 9253491 ~ 9254055 (+)
G2049073 pld3 non-coding upstream 47053 9212350 ~ 9224788 (+)
G2049095 NA non-coding upstream 101192 9170449 ~ 9170649 (+)
G2049091 NA non-coding upstream 109854 9161648 ~ 9161987 (+)
G2049133 NA non-coding downstream 633 9274342 ~ 9274622 (+)
G2049134 NA non-coding downstream 979 9274688 ~ 9275166 (+)
G2049162 NA non-coding downstream 65541 9339250 ~ 9339531 (+)
G2049166 NA non-coding downstream 70454 9344163 ~ 9344403 (+)
G2049171 NA non-coding downstream 79175 9352884 ~ 9353338 (+)
si:cabz01090165.1 LOC106580728 other upstream 547538 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2013611 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2020266 7245806 ~ 7251575 (+)
G2045665 NA other upstream 2551149 6719764 ~ 6720692 (+)
G2045655 NA other upstream 2578797 6692544 ~ 6693044 (+)
G2049339 LOC100380674 other downstream 133916 9407625 ~ 9408571 (+)
G2049657 NA other downstream 514097 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 1005401 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 1115292 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 1132664 10391240 ~ 10417311 (+)

Expression


Co-expression Network