LOC110507484 (LOC106580753)


Basic Information

Item Value
gene id LOC110507484
gene name LOC106580753
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 9506485 ~ 9538992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587504.2
ttattgtttcgaCTGCGTCGGTGACAGACATAGTTTTCCAAGTGTTTAGTGATTCACTGGTGTTTCCGAGCTCACAGCGCAGTCGACAGACAGTGGGCGAACCGGATGATAATTTGGTTCAATTCCTTGCAGAGCGGTTTTATGCTTCACATGTATCTCAGTGGAGGCGCCTCTGTCCTATAAACTTTATGGATTCCGCTACAACCCTGTAATTTTGAAATACGCTCTGTATTTGGCGTTTAAAGCCATCTCAATTGCGCACGGGATCTAGACAATTAACTGGAAAAAAATGATTCCCCGAACGGGTGCGGGCTATGGGGTGGAGGTCTGAGGCATGGCCTGGTTCTGGGCCCCCTGGGTGAACAACACCCAGTAGCCCTGAGATGATGAGTGGCCGTCCGCCCTGGCACTCCTCTAAGTGATGAAGACCCCtgccatcctcctcctcatcctgtcTGTCCTGTGCAGAACTGTGCTTGTGTCAACGAAGTCGGTGAAGCACACAGTGGAGGAATGGAACAAATACAGGAGCGAGTGCCTGCTGAGAATGAGCATGGACCCCACACCCCCAGGCTTATTCTGCAGCCGCATGTTTGACATGTACGCCTGCTGGCCGGAGGGCATCCCCAACACCACCGTTAAAGTGCCCTGCCCGTGGTACCTTCCCTGGTACAACCAAGTTCGTAATGGATATGTGTTGCGGGAGTGTGGGCCTGATGGCCAGTGGGCCGTTAACAACACCAGTAGCACCTGGAGGGACCACTCCCAGTGCAACGCAGACAATAACCAGCAGGTGGCACAGGAGAACCAGATGGTCATCTTGGCCTACTTCCGGGTGATGTACACTGTGGGCTACTCTCTGTCCCTGGCCAGCCTTTCCCTGGCCCTTGTCATACTGCTCATCTTCAGGAAACTAAGGTGCACCAGGAACTATATCCACACCAATCTGTTTGCGTCCTTCATCCTGCGAGCCATATCCATCCTCACCAGAGATGCTGTTCTCACCAGGGACACCCCCGAGTTCAGAGACAACAGAGACGTGTCCAATGTCCTTAGTGATCAGGCTCTCTCTGGCTGCCGTGTGGCCCAGGTGCTGATGCAGTACTGTGTGGGGGCTAACTACTACTGGCTGCTGGTGGAAGGACTGTACCTTCACAACCTGCTGGTGCTCATGGTCTTCTCTGAGAACAGCTACTTCTGTGGATACCTCTTCATTGGCTGGGGAACCCCAGTGTTATTTGTGGTCCCCTGGATTATAGTTCGGTACCTGTACGAAAACACACGGTGCTGGGAGATCAACGAGAACATGGCACACTGGTGGATCATCCGCACACCCATCCTCCTGGCCATTCTGgTCAACTTTTTCATATTTATTCGGATCATACAGATCCTTGTCTCCAAATTAAAGGCACGCCAAATGAGGTACACAGATTATAAATTCAGGTTGGCAAAGTCCACTTTgaccctcatccctctcctggGCATCCATGAGGTTGTCTTTGCCGTGATGTCAGAGGAACAGACAGAGGGCATCCTCCGAAATATCAACCTCTTCTTTGAACTTTTCTTCAATTCTTTCCAGGGTCTCCTGGTTGCCATCCTGTACTGCTTCGTCAATAAAGAGGTGCAGTCAGAGATAAAGAAGAAGTGGCAGCGATGGAAGCTGGGCATGAACGTCCTGGACGACCTTCGCAACACCGGCAGCAACACGCTACAGGGGGGCACCAGCGGAGGGCAGTGCCACCACGACCCGCCCTGCCAGCCTGACTGTCCACAGAAGGATACCCACAATCTCTCCTCAGACGCCTCCGCCTCAGGGCCGCATGCCCACCCGCGCCCACACTACCACCCAGGGGCCAAGAAGGGCAAGGCCTACTGCTACATTTCCGCCCGCAAGCAGGTGCTGAACGGCCTTGATGGAACTCCGCTGGGCAAcgggggaggagaaggagtcaTCAAATACTCTGAAAGCTACTGCTGAGTGGCCCTGTTGGGGTCTAATGAGGGCTAACGAGTAGCTGACTACCTTTGTCATTTCTAGTGGAAAGAATCCGAACCAGACAATCACCTGCTTCCAATTCAGTTGTGTACTTCCAGATCTATGTGGCCTACTTGGTGTTTCGTGGAACCCATGTCTTAATAATTGTGTGAACATGATCCGGGACTCTTTGGATGATTGCCAGAATGCCTTTTCTGCCCTGGCCAATCAGGCTATGTGTTGTGACTCCCATAGGCTTCCAGTGGGAGATAAGATGACCCATCCCAAGTGCAATATCGCCGCAATCGACCCAGATGTTGAGGAAAGCTACTACTTAAATTAGGAAATGATCACCGTCCAACCTTTATCTGCTCAGCTTTGACTGTTTTGGGGGGTTTGCCTCTTTGttctctacctctcgctctacTTGTGGACAAAATGGAAAGGTTACGTACCAACCGTGGACCGTCTTTTCATGTGCAATGGATATTATAACAATAGTTTGTTTTATATGTTGGTATTGGAAAATGTCTCTCTGAGGGACTTAGAGAAGGCAAGAGGTGAGCAAACCAATATTGTCTTCCCCAGtgagttagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactatggtttCCCTAGGAAACTCTGTGTTTTGAATTCCTCTCACCCAACCGTTGAAAACCTGTCATTCCCCTTGCTCTCTAGTCATACATTTATGGCAACCTTATAGTCATAGTTATGGTAGCCTGTTACTCACCACAAATAGTTTTTTTCTTGTAGCTTTTCCAGACTAACCACAACCACTTACCACCCAGCTGAAGGCTTTACATCCCGCTGAGCACAGGTCGTAACATCTCTCCTCTGCGTCTGGGGATTAAGGTCCCAGCACCCTTGCTGCCATGTAGCTTAAATCAAAATGGGGCAATAGGAAATGGCTCTCTACACGATAGACCACagccacaaaatacacatttAGTATTCTGCTGCGTGCGTGTCGATGGTATGCTGTAGGTCTACATGTCCTCTGTGAAGATGTCTGGTACTTTACATACATCTATGTAAGGTTGCCAAAAACTCGGTTCTCCATGCCGGAATCAGTGAGAAACAAAATATTTTGCACTGAACTCACCCTCAGTGAAGTTTTGAAATACCAATTACCCAATATGAGTTTAGCTAACGGTGCTTTATTTTAACCCAGCTAATAATCCCCCACTCCTATTTAAAGACTGGTTTCAATCTAAAACTAGTACAGCACAACCCTAACTTCTCCAGATATAGCTTGACTACTCGGTGTGTATGGATCTGTCTGAGCTTCCAGAGCCCTCAACTCATTTTACTGTTTGTAATTAGTCTCTTCTTGAGGGTCACATTGCACCTAAAGGCTCCCCACCGgttgaacaggggttctgtataAATGTAGGCAATTAAACCAGACAATTTCCAACTTCCCTTTTGAAATAGCTCCTCTAACCCGCATACACAGAGGCCCCATCTTCACACATGCCAATGGAGTAATGAGGTAGCCTTGTTTTTCTGTCTTCCCATTCACACCAAATGGGGCTAACCCATTACCCAAACATGTCCACCATCATTCAGTGCCATCAAAATGTAGCATGTCATACTAATGAACATTCATTTTATCACCAGGAGTATTCCTACTAGGGTCATTACTGGTGCTTGACAGAGGGGCCTTAACGCCTCTGGTGGCATAGATCAttaccctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgctatTATCTTAATTTCCAAAGTGGCTTGGCTGATCCTCACAACTGAAATAGCATTCACAAACTGAGCATTGCACTTCACAAATATCTTCTAGTATAATATACCTTTGGCAACATGCACGCGTAGCCTTTGGAATTTCTTTGGCAAACATTACAAATGTTTGCCAAACAGCTTATGTCAGACATTGACCTTTCAATTAAAAAATGACCAGATGTAGCATATAGTTAGTTAGCATTGCTAGTATGTGTCACAGTGGTGCCGTGACCTGGATCTAGAGAGTGGACCCAGTAAACCGAGGTCAAAGGGAGGTAGATTCAGTGGATGCTTATGTTAGAACCGTGCAGTGGGTTAGGACTGTACTGTCACCCTGGACCCACAATACATTGGGTCCATTGTGGCAGAGGTGGAACGTGTTACATAAACGGACATGACCTTCTGACGTGACTCCACATGTTCTATATACCTGTCAACAGGTAAACTTGGCGCACTGACACTCAAATGATATTTAACTCTGTGTGAGTAGGTTATCATCACAGGGAGATTACTGTACAAAGAGCAGCACTAAATCTCACATATGTGACATGAATGGACACTATTTTTACTCACTTTTTATTTACATGTTTgttatttaaattaaattattcttaatctga
>TU2344198
CTTCGCAACACCGGCAGCAACACGCTACAGGGGGGCACCAGCGGAGGGCAGTGCCACCACGACCCGCCCTGCCAGCCTGACTGTCCACAGAAGGATACCCACAATCTCTCCTCAGACGCCTCCGCCTCAGGGCCGCATGCCCACCCGCGCCCACACTACCACCCAGGGGCCAAGAAGGGCAAGGCCTACTGCTACATTTCCGCCCGCAAGCAGGTGCTGAACGGCCTTGATGGAACTCCGCTGGGCAAcgggggaggagaaggagtcaTCAAATACTCTGAAAGCTACTGCTGAGTGGCCCTGTTGGGGTCTAATGAGGGCTAACGAGTAGCTGACTACCTTTGTCATTTCTAGTGGAAAGAATCCGAACCAGACAATCACCTGCTTCCAATTCAGTTGTGTACTTCCAGATCTATGTGGCCTACTTGGTGTTTCGTGGAACCCATGTCTTAATAATTGTGTGAACATGATCCGGGACTCTTTGGATGATTGCCAGAATGCCTTTTCTGCCCTGGCCAATCAGGCTATGTGTTGTGACTCCCATAGGCTTCCAGTGGGAGATAAGATGACCCATCCCAAGTGCAATATCGCCGCAATCGACCCAGATGTTGAGGAAAGCTACTACTTAAATTAGGAAATGATCACCGTCCAACCTTTATCTGCTCAGCTTTGACTGTTTTGGGGGGTTTGCCTCTTTGttctctacctctcgctctacTTGTGGACAAAATGGAAAGGTTACGTACCAACCGTGGACCGTCTTTTCA
>TU2344199
TGAACGGCCTTGATGGAACTCCGCTGGGCAAcgggggaggagaaggagtcaTCAAATACTCTGAAAGCTACTGCTGAGTGGCCCTGTTGGGGTCTAATGAGGGCTAACGAGTAGCTGACTACCTTTGTCATTTCTAGTGGAAAGAATCCGAACCAGACAATCACCTGCTTCCAATTCAGTTGTGTACTTCCAGATCTATGTGGCCTACTTGGTGTTTCGTGGAACCCATGTCTTAATAATTGTGTGAACATGATCCGGGACTCTTTGGATGATTGCCAGAATGCCTTTTCTGCCCTGGCCAATCAGGCTATGTGTTGTGACTCCCATAGGCTTCCAGTGGGAGATAAGATGACCCATCCCAAGTGCAATATCGCCGCAATCGACCCAGATGTTGAGGAAAGCTACTACTTAAATTAGGAAATGATCACCGTCCAACCTTTATCTGCTCAGCTTTGACTGTTTTGGGGGGTTTGCCTCTTTGttctctacctctcgctctacTTGTGGACAAAATGGAAAGGTTACGTACCAACCGTGGACCGTCTTTTCATGTGCAATGGATATTATAACAATAGTTTGTTTTATATGTTGGTATTGGAAAATGTCTCTCTGAGGGACTTAGAGAAGGCAAGAGGTGAGCAAACCAATATTGTCTTCCCCAGtgagttagacacac
>TU2344197
TCTGTGTTTTGAATTCCTCTCACCCAACCGTTGAAAACCTGTCATTCCCCTTGCTCTCTAGTCATACATTTATGGCAACCTTATAGTCATAGTTATGGTAGCCTGTTACTCACCACAAATAGTTTTTTTCTTGTAGCTTTTCCAGACTAACCACAACCACTTACCACCCAGCTGAAGGCTTTACATCCCGCTGAGCACAGGTCGTAACATCTCTCCTCTGCGTCTGGGGATTAAGGTCCCAGCACCCTTGCTGCCATGTAGCTTAAATCAAAATGGGGCAATAGGAAATGGCTCTCTACACGATAGACCACagccacaaaatacacatttAGTATTCTGCTGCGTGCGTGTCGATGGTATGCTGTAGGTCTACATGTCCTCTGTGAAGATGTCTGGTACTTTACATACATCTATGTAAGGTTGCCAAAAACTCGGTTCTCCATGCCGGAATCAGTGAGAAACAAAATATTTTGCACTGAACTCACCCTCAGTGAAGTTTTGAAATACCAATTACCCAATATGAGTTTAGCTAACGGTGCTTTATTTTAACCCAGCTAATAATCCCCCACTCCTATTTAAAGACTGGTTTCAATCTAAAACTAGTACAGCACAACCCTAACTTCTCCAGATATAGCTTGACTACTCGGTGTGTATGGATCTGTCTGAGCTTCCAGAGCCCTCAACTCATTTTACTGTTTGTAATTAGTCTCTTCTTGAGGGTCACATTGCACCTAAAGGCTCCCCACCGgttgaacaggggttctgtataAATGTAGGCAATTAAACCAGACAATTTCCAACTTCCCTTTTGAAATAGCTCCTCTAACCCGCATACACAGAGGCCCCATCTTCACACATGCCAATGGAGTAATGAGGTAGCCTTGTTTTTCTGTCTTCCCATTCACACCAAATGGGGCTAACCCATTACCCAAACATGTCCACCATCATTCAGTGCCATCAAAATGTAGCATGTCATACTAATGAACATTCATTTTATCACCAGGAGTATTCCTACTAGGGTCATTACTGGTGCTTGACAGAGGGGCCTTAACGCCTCTGGTGGCA
>TU2344196
TGTAGGTCTACATGTCCTCTGTGAAGATGTCTGGTACTTTACATACATCTATGTAAGGTTGCCAAAAACTCGGTTCTCCATGCCGGAATCAGTGAGAAACAAAATATTTTGCACTGAACTCACCCTCAGTGAAGTTTTGAAATACCAATTACCCAATATGAGTTTAGCTAACGGTGCTTTATTTTAACCCAGCTAATAATCCCCCACTCCTATTTAAAGACTGGTTTCAATCTAAAACTAGTACAGCACAACCCTAACTTCTCCAGATATAGCTTGACTACTCGGTGTGTATGGATCTGTCTGAGCTTCCAGAGCCCTCAACTCATTTTACTGTTTGTAATTAGTCTCTTCTTGAGGGTCACATTGCACCTAAAGGCTCCCCACCGgttgaacaggggttctgtataAATGTAGGCAATTAAACCAGACAATTTCCAACTTCCCTTTTGAAATAGCTCCTCTAACCCGCATACACAGAGGCCCCATCTTCACACATGCCAATGGAGTAATGAGGTAGCCTTGTTTTTCTGTCTTCCCATTCACACCAAATGGGGCTAACCCATTACCCAAACATGTCCACCATCATTCAGTGCCATCAAAATGTAGCATGTCATACTAATGAACATTCATTTTATCACCAGGAGTATTCCTACTAGGGTCATTACTGGTGCTTGACAGAGGGGCCTTAACGCCTCTGGTGGCATAGATCAttaccctagtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587504.2 False 4639 mRNA 0.48 14 9506485 9538992
TU2344198 False 767 lncRNA 0.53 1 9536041 9536807
TU2344199 False 676 lncRNA 0.46 1 9536258 9536933
TU2344197 False 1065 lncRNA 0.43 1 9537083 9538147
TU2344196 True 737 lncRNA 0.43 1 9537445 9538181

Neighbor

gene id symbol gene type direction distance location
LOC110507479 LOC106580747 coding upstream 232776 9271841 ~ 9273709 (+)
LOC110507063 hipk4 coding upstream 294422 9209754 ~ 9212063 (+)
LOC110507469 sertad3 coding upstream 375750 9128031 ~ 9130735 (+)
LOC110507468 blvrb coding upstream 380173 9123596 ~ 9126312 (+)
esrrd LOC106580735 coding upstream 462806 9036968 ~ 9043679 (+)
LOC110507488 LOC106580752 coding downstream 58164 9597156 ~ 9619474 (+)
LOC110507489 LOC106580757 coding downstream 85922 9624914 ~ 9640110 (+)
LOC110507491 LOC106580758 coding downstream 107695 9646687 ~ 9658211 (+)
capn4 LOC106580760 coding downstream 131772 9670764 ~ 9677392 (+)
LOC110507494 LOC106580760 coding downstream 160801 9699793 ~ 9705322 (+)
G2049512 NA non-coding upstream 2451 9503749 ~ 9504034 (+)
G2049396 NA non-coding upstream 17754 9488366 ~ 9488731 (+)
G2049389 NA non-coding upstream 24764 9481503 ~ 9481721 (+)
G2049372 NA non-coding upstream 47852 9458320 ~ 9458633 (+)
G2049371 NA non-coding upstream 48348 9457814 ~ 9458137 (+)
G2049556 LOC106580756 non-coding downstream 9640 9548632 ~ 9557508 (+)
G2049558 NA non-coding downstream 20084 9559076 ~ 9561926 (+)
G2049554 NA non-coding downstream 26148 9565140 ~ 9593578 (+)
G2049555 NA non-coding downstream 123105 9662097 ~ 9664055 (+)
G2049560 NA non-coding downstream 177254 9716246 ~ 9716755 (+)
G2049339 LOC100380674 other upstream 97914 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 782182 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2248255 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2254910 7245806 ~ 7251575 (+)
G2045665 NA other upstream 2785793 6719764 ~ 6720692 (+)
G2049657 NA other downstream 248814 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 740118 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 850009 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 867381 10391240 ~ 10417311 (+)
rap1gap2a LOC106580794 other downstream 1036718 10494894 ~ 10583085 (+)
G2049533 NA non-coding upstream 2416 9533333 ~ 9533625 (+)
G2049529 NA non-coding upstream 11028 9524690 ~ 9525013 (+)
G2049524 NA non-coding upstream 18394 9512224 ~ 9517647 (+)
G2049523 NA non-coding upstream 19583 9510676 ~ 9516458 (+)

Expression


Co-expression Network