LOC110507488 (LOC106580752)


Basic Information

Item Value
gene id LOC110507488
gene name LOC106580752
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 9597156 ~ 9619474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587509.2
AGGAAGGACACACACAATGGTAGCCAACGTTGTGGTCCATGGGCGCTCACGCCCGTGACGCAGGCACAGAGAAAGACCTTCGCAGCAGTACAGCAGCATTTTCAGCACCATTGCAGTTCTCATCTAGCTGAACCGCGAGGAAAAGCTAGAGATAATCGACAAGGCTTGTTTTCAGGCCTGGCAACATCTAGCAGAATGACTAAAGAGCAGACTGccgaggtggaggaggaggcccAGCCTGCCTCTGAGTACCAGAGCCCAGTTCATGAGCCCCGGAAGAGGCCCATGGTCCACCCATCTGCACAGGCCCCCCTCCCCAAAGACTATGTCTTCACATTCTTTGACCCAAATGATCCTGCGTGTCTGGAGATCCTGCTGGATCCGCGCACCACCATCCCAGAGCTTTTCGCCATCATCCGTCAGTGGGTCCCACAGGTCCAGCACAAGATCGACCTCATCGGAAACGAGATCTTAAAGCGTGGTTGCCATGTCAATGACCGTGATGGACTGACAGACATGACCTTGCTCCACTACAGTTGCAAAGCCGGGGCCCATGGTGTTGGTGACCCTACCGCTGCCCTCAGGCTGTCCAATCAGCTCATTTCCCTGGGGGCAGACGTAAGTCTCCGCAGCCGCTGGACCAACATGAACGCCGTGCACTATGCTGCATACTTCGACGTGCCAGAGCTGATTCGCATTCTCCTCAAGGCCTCCAAACCTAGAGTACTGAATTCCACCTGCAGTGACTTCCACCATGGCACAGCCCTGCACATTGCAGCCTCCAACCTGTGTCTGGGATCAGTCCAGTGTCTGCTAGAGCATGGAGCCAACCCCACTGTCAGGAATGATAAAGGGCAGGGGCCAGCCGAGGTGGTCCCTGACCCCATGGACATGACTCTGGACAAAGCGGAGGCGGCCATGGTGGCCAAGGAGCTGAAGCAGCTGCTGCTGGACTCTGTGCCACTCAGCTGCAACCTGCCCCGCGCCACCCTGCTCAACTACGACAACATCCCTGGCAACCTCATGCTCACCTCCATCGGCCTGAAACTGGGAGACCGTGTGGTGCTGGACGACATGAAGACGGGCACCCTGCGCTTCTGTGGGACCACGGAGTTCGCCAGTGGCCAGTGGGTGGGGGTGGAGCTGGACGAGCCAGAGGGCAAGAACGACGGAAGTGTGGGAGGGGTGCGCTACTTCATCTGCCCCCCCAAACTGGGTATCTTTGCTCCAGTGTCAAAAATCGCTAAAGCTGTTGAGCTGGCCCCCTCCTCTGTCACCTCCACACCCAAGACACCCCGCATGGACTTCTCCCGCGTCACAGGAAAGAACAAGAAAGAAAAGAAGGaaataatggagagagagaaagCTCTGAGGAAGAAGTCTATGTCCGTAGCCAGTCTGGACCCAGATGGGGTGAAGGTGGAACTTGGAGATCAGGTGCTGGTTGCTGGTGTGAAGCAGGGAATCATACGCTATTACGGAAAGACAGACTTTGCCCCAGgttacTGGTTTGGTGTGGAGCTGGAGAATCCCACAGGAAAGCATGATGGGTCTGTTTTTGGTGTCCGCTACTTCAACTGCATGCCCAAGTACGGTGTCTTTGCACCCCCATCTCGCGTGCAGAGAATCTGCGGACCAAAGGACGGTCATAGCGGCGACGGCACGATGGTGAAGAAAGTCCACCAGGTGTCTATGAACCAGCCAAAGCGTAAATTCAACACGGTGAGGTCACCCAAGGACATCACCTCTGAGAATTCAATATCACGATTGCTGTTCTGCTGCTGGTTCCCCTGGATGCTGCGTGCTGAGATGCAGTCCTAaccaccctcctccttcctcctcctcttcctcctcctcaaaaGATCTACTGCTCTCCTCCTCTTAATGTCCATCTTTTATTTGTGCTTTCCTCTGGCTGTTGCTGTCAGAATTACAGTAGTgaaccaccaccccccccccccccccataatctCAGTCAGTCCTATAGCAAAACCTAGTGCCTTGTACGTTAACTAACATCCCGCATTCTGTTTGTAACACTAATAACGAGACTAAATCATTGTAACCCGAAATCTGGGATACAAACCCTACAAAAGCAATTATCTAATAGATATAAATCACTTCGTTTTTTCTAAGTTACTCTATTTCAGAAGTTGCCAAAACGTCAGAAGTTGCCAACACCCTTTGTCCAGTCAGCCAACTTCTTATGCCATGGAGCTTCTACTAGGGAACCTTTCAAATGACTAAGTACATGATGCTGTACTCTGTTGTTTTTCTGCTGCTTCATCCTAATTCCCTGTATTTCAGAGGAGACCAAGGGCCTCAACGTAATGCCTGGTCTGTCAGTGTGAACCGACTGTAGATGGCCATGTTGCGCTAAAGGGATTTATCCAAAATGTGGATGTGTGAGTCAAATTGTGTTCCAAATAAATGTTCACATCAACATGCCTTTTATTGTGAAAAGATGAGATATGAACATACGGTCATGTTCTTCTGATGGTGTATGTTCAAAAGTAAACAGGGTTTAATATTATTCGGGATTCCGACATCTGCTATTTCTCCACTTGCACTCTGAGCATTTCCCCAAATATGCAATTGGAATGATGTATATAATATTGATTTGCTTGTTAATGGGCTTGTGTTAATTGTAGTATGCTCACAGGTGATACAAAAACAAGGTTCTGGTAGCCTACTAAATTTGTTGACAGAGCCCTGTTAAATACTAGTTACCTGTTTTACCGGTTTTAGGTAAGGTAATGCTAGCACGTACATATATGTTCATCATAATGTCCCAACTTAATTGCAGAAGGAGAACTTTATCTGCGCAGATATCTTCTGTACCCTTGAAAGACAATTTTCTAGCAATGGTTTAAATCGTGGCAATATAGACAGCGCCATTTGTCAATAACTGGGTCAAATAAGACTTTCAGAACTTGGTCTTAGGTGTTTATTGCACTTTGAGCCAGTTGGTCTCAAATCCAAGTTATGCTAACCAAAATGTCTGCTAACCCCAAAATGTAATGGCAGGTAATGTAAGGGAAAACCACCTAGATTAATATTGTTTAAGCTGTTGTCTTTATTGTGTAGCATGAAGTACCAATAACATAACTTTTGCTTAACTTTAACTTAAACGTACTGTTAGCGAAAAGCTTTATTTTTTGTTTATAGAAATCTACAAGGGTACCACAATATACTTGTTAAAGGTACATTTTTTGATAAACCAGtgccctcctccccatctctagGTTTGTTGTTGCAGCAATGGTGTTAATCTCAGGCTAAATCTGCACAGACGGAACACCTGCTAGCTCAGTGCTACCACAGTTTACACCCCCTGTTGGCTATCCTCCCatgcttctctctccttctctctcaaagTTAGACTTTGGTAGGTTTGTGAGTGTGAGCATTAGATACAGATCTGACCGTCTGAACTTGTGTGTGCTTAATGTCAAAACCTACGAGTATGTgcataaaaacagaaatatttaaCCTGTGTACTTAGCTATGTGGATACGGATAGTGTCTTTGTCTACTGAACACTATGTAAGCACATCATGAGGAGGAGAAAAAAACACCTGAACTTGCTCCTGCACTCTTTGAACACCGTTGTGAACATCCTGTGTTAATAACAGCACCGTGAAACGGCAAGAAATACTCATTATCAGGAAGGGTCTAAAAACTCGTGCACCATGTCGTATTCCGAAATCGCCACTTATCCAATGTGGTACTGAACAATGTGGAACTGAAGGCAACAATGTGTGgttgtttttgatattgctagcGTACGGTTATGACTAGGTCTGTAAGAGAGCCGCAGAACAACGAGGATGCTATGAGGGAGTCGGCTTCAGCTTCATTTGATCTGAATAAGGGACATTAGTATATCCAGTTTGAGAGGAACTCATTCATTACACCTCAAAGTCATGTAATGGGATACTTAGTAACCTGTGGCAATTGGAACTTTTCTCCTTTTTGTATTTCATTGAATTATGACTATGTCAACACAAAGTATTGCAAACTTTGTCAGGACAGCTCACTTTGTTCAAATCTTCTGTTAGCCAAATATACTCAAATTTTGTGTCAAGAAGGACTGAGTTTCTTTACTATTGTGAGCATTGTTTAGTAGATAAGAAAATCATCCTCGCCTCATGCTGAAGTGCTTGATAATGAGTAAGAATACATTAACCATTTCTTGTCTTTACTACTTATGTTGGAGAAATGTCATTAGAAATAAGTATAGCAACATTGTTCATATTTACTAAATGGTTGAGTTGAGTAGGTGGTTGACTGGCAGATTTAATGCTCAAGTAAAGTGACCAAAATGGTGTAGTTATTGCCTGACTTTTACGCTCTAGTAGCATAATAAGTCCCACAATATGCCAGTAGATGTCACTAATGTGTCACTTTTATCATCTCTACAACTAACAACACGACAAGAATCTACATTGATGAGTCCTCCACTcttcaaatgttttttatttattcaacATTATGTACGTTGATATAACCTTATTAAGTGGTGTACTGTCATtatttaaaaaagtttaaaaaaaatgttattctAAAACTTGATCTCAACAATGGTTAATTTTCTTCACAGACATGTCATAGCAGTttgttaaaaatatattttgataattTCACTAAGTGTACTTTTATTTAGTTTtgtagtgtgttggtgtctgtgtcCCAAAACAGGTAAAGGGGGCTGTAATGTTGGATTTATTATAGTGTCAGGAATAATATTTTTTGCATGCTCTTCATTTTCTGAAAGTTTCTTTTTCCAACGGTGTATCTCAGCATGAAAATGCTTATAATTACAACTCTGACTATGAATCTAATAAAAGTTTATGTTGTTTTCTACA

Function

NR:

description
CAP-Gly domain-containing linker protein 3-like

GO: NA

KEGG:

id description
K10423 CLIP3_4; CAP-Gly domain-containing linker protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587509.2 True 4868 mRNA 0.44 14 9597156 9619474

Neighbor

gene id symbol gene type direction distance location
LOC110507484 LOC106580753 coding upstream 58164 9506485 ~ 9538992 (+)
LOC110507479 LOC106580747 coding upstream 323447 9271841 ~ 9273709 (+)
LOC110507063 hipk4 coding upstream 385093 9209754 ~ 9212063 (+)
LOC110507469 sertad3 coding upstream 466421 9128031 ~ 9130735 (+)
LOC110507468 blvrb coding upstream 470844 9123596 ~ 9126312 (+)
LOC110507489 LOC106580757 coding downstream 5440 9624914 ~ 9640110 (+)
LOC110507491 LOC106580758 coding downstream 27213 9646687 ~ 9658211 (+)
capn4 LOC106580760 coding downstream 51290 9670764 ~ 9677392 (+)
LOC110507494 LOC106580760 coding downstream 80319 9699793 ~ 9705322 (+)
LOC110507495 LOC106580895 coding downstream 86156 9705630 ~ 9714582 (+)
G2049554 NA non-coding upstream 3578 9565140 ~ 9593578 (+)
G2049558 NA non-coding upstream 35230 9559076 ~ 9561926 (+)
G2049556 LOC106580756 non-coding upstream 39648 9548632 ~ 9557508 (+)
G2049533 NA non-coding upstream 63531 9533333 ~ 9533625 (+)
G2049555 NA non-coding downstream 42623 9662097 ~ 9664055 (+)
G2049560 NA non-coding downstream 96772 9716246 ~ 9716755 (+)
G2049559 NA non-coding downstream 100922 9720396 ~ 9721576 (+)
G2049640 NA non-coding downstream 146577 9766051 ~ 9766274 (+)
G2049676 NA non-coding downstream 196309 9815783 ~ 9816006 (+)
G2049339 LOC100380674 other upstream 188585 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 872853 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2338926 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2345581 7245806 ~ 7251575 (+)
G2045665 NA other upstream 2876464 6719764 ~ 6720692 (+)
G2049657 NA other downstream 168332 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 659636 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 769527 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 786899 10391240 ~ 10417311 (+)
rap1gap2a LOC106580794 other downstream 956236 10494894 ~ 10583085 (+)

Expression


Co-expression Network