LOC110507489 (LOC106580757)


Basic Information

Item Value
gene id LOC110507489
gene name LOC106580757
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 9624914 ~ 9640110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587511.2
AGGGGTGTGGTTTCAAACTACCTGTGACAGGTCAAGTTACCTGCCACATTCATAACGCCGGCGTGCTCATTCGATAGTGGTTACATCTACAAGAGAAAGCAGATCAACTTCACAAATGTCATCCTATGGTTGTTTGTTTAAGTGTGCACAAACGTCCCTCCGCATTTTCGAATAGGTGTTTGTCACATTTAGGCGTTAAGCGAAATGGGGCTTCCAAGTGTCAAGACCTCCCAGCTGTATGAATTCTACCTGTGAATCCAGACGAAATAGAATCGTGGAGCTGCCCAGGTGACAGGTGGAGCCCAAGATGCATGTGGAGGTGCAACTCCCAGCTGGTAGTCATGGACACCATTGTCCCTGCAGCATTGGAAGTGACATAATGTCGGAGGAGGATGAACGTCGAGTCGCTACCCAGTCTGTGAACAGCCCCTTGGGATTGGACCTGATCCTAGAGCACACTGAGCCCCTACTTTCTGAGTCCCATTTCCTTCCTCTTCTAGATATCGGTGAGGAGCCCCAAGACTGTCTGCCACTGGGAAGCTGCTTGATCCAAGATGGAAGCCTGTCTCTGGATGGATGTGTCCAGCTGGAAAGAAAATGGGTGCTATGGCATGAGTTCATGAAGGAGTGCTCCTCTCTCGGCGACTGGCTCCAATTGGCTGAGAAGTCTGCCGACTCCCCGAGATCTGCCAATGTGCTCTTTGTTACTGCCAAGGAGGAGCTCAAGAAATTTGAGAGCCTGAGGACCCAGGCTGGGGCTCGGTTAGTGCAGCTGGACAGTCTGACCCTTAGGAACAGGACCCTGACCAGGCTCTTTGATGGGGCCATGCGGTCACGCCTGCTGGGCATGGCCAAGGACTGTGGTCAGCGCTGGGACCGCCTACACGGAACCGTTGAGAGTGTCTGCCGCAGACTCAAGCACCGTGTGTCCCAGCGGGAGGAGTTTGAGGGCCAGAGGGAGGAGATGGCTGTGTGGCTTGCTGACATGGACCTTAGGCTGACCGAGGTGGAACACTTCTCTGGAAGGGACACCTGTGACAAGATGCGGGAGCTGCAGaCCTTCCAGGAGGCAGTGGGGGAGAATGCGAGGCGTCTGAACTGTCTCCTGGAGCGGGGTGAGGCGCTAATCCAGAGGAGCGAGCCAGAGGACGCCCAAGACATCGAGGCGGGGCTGCAGGAGCTGCTGCTCTACTGTGCCCAAGTATTTGAGGGAGTGGGCCGTCTGCACACACGCCTGCTCAGCATGAGACTGGTGTATGAGGATGACTGGGTACTGACTCAAGCCTCTGACTCCGGCTGTCCATCTGAGATCCTGTTGGAGCAGGATGGTGTGTTTGAGAAGAGCAGCGCCCCAGACCAGCGGAACCCCCCCAACCTGGACCACATGGTGCTGGAGTGGGACCCCTCCGTCGACATCGGGGGCCCCGTCTCCCAATACGACGCTGACTTGTCATATTTCAGCGCCCACACAGGTCGAGAGAAGCCATTGGCCAGAGATGGTGTGAAGAGGCAGAGTTACCTCAGCTCCATAGGCTCTCAGTCTGATCTAAATAACAGCGCAGCAGAGGACATGtgtgcttGTTGCTCTGAGGGAAGCCACAGTCTTGGGGACATTGCTGTTCAGACACACGCCCAGAAGCTGTGCTTGGCCGCCTGCAATTCACAGTCATGTGACCTCCAGCTCCAGTCTGATACGATGACTTGTAGACTTCAATCAAACCCACAGTCTCCAGAGGAAGAGCTGCACTGCAATGCCTCATGGGAGGTGGTCCATAGTGAGCAACTGCCAAATGAGTGCCCTGACAGACAAACCCAGTGCAGCTCGTGGCCCCTGGGGGCACTAAAGACTCTGAGGAGCCCAGTGTTCCTGGTCATCCTGCTGGCTGTGTTCCTAGCCCTGCTGGTCTGGCCCACAACACTCTTCATGGACCCAGAGTGCCACCGCTCCAACTCCCTTGCCCGCACCTTCCAACTGGCCCTGAGCTACGTCAACGGGCCCCCGCCAACATGAGGGACAAAAGTGTCCCAGAAGGTGGTCACATTAAATCCGTGGTGAGCCCTGAACACACCTTATTCAGGGGGGACAGTCCCAGAAAGCCTTTCCATTTCAAAACCATGAGTAAGGCATTAACAAGGAGGCCGTATGAGAAATGAGAGAAATTAAGAACTATTAGGCCCAATAAAAATGTGGCCTTGGTATTTATTATCTGAATCCCTCCACCAGCCTGCTGGCAGAAGTAGCTCATGACTTAATAGGCCTCATTTTATAACGCTCTCTAATGGCATTCATAATGTCTTACTATGCCAGGGTAGCACTTTagttgattggtctgtcatgaTGGATTTGTAACTTATTTATGTGGTGATTATAATCTATATGGACGACTTAATGACAGCAAATACTTTGAGCAATTCTCTTTTGGGCATTTGAAATGATCTGTATATCAATATTTATTATGTCAAAGCTAGAGAGAGCTTTCGATTTATTCTGCACTCTATATTGCAAGAGCTTGGGACTATTGGTTCGATCTGCATTTTTGTCCAAATTGAGTTATTGATCaagccttgttctgttcaatgttctctacccATATAGTACTCAACACCCCAATCTTGTTAAATTCAAAAGAATATCAGACAAACATTGCTGACACCTTTCAAACCATTGAGGGTTTGGAACTTTgaagccaattatctcagaatcatctATTTGCAGGTAATCGTTAGTCCCAAGCTCTCCATTTCACATGGGGTTTCCTCAAATGAATAATACTGAATGCCCGAGTTCGGATTTACTAGGGCGACTTGCAGAGATAACCCATTTGTAGGTCAATGGGATAGGTGACCTGGTTAATGCACTTAGGATAAATTAGCACTCCTTTTGTGCTGCCGCTGTGGGTGAGACCTTGTTTGCATGTGCGTGGGTCGTTCGTATATACTCAATGAATTTCTTTTACATCTGCTGCGACGCCAACGGGGTCCAGCTGGAAAACAATCAGGCAAAAGGCAACTCATCTGAGGCCAGTGAAGACCGTGTAAgcctctaaacatactgtatgtgttatgtaaTGGTTTATGGCTATGTTTTTGACATAGTGGATGCAATCCTGGATCTCATCCGTATgtcaca
>XM_021587510.2
GGGGTGTGGTTTCAAACTACCTGTGACAGGTCAAGTTACCTGCCACATTCATAACGCCGGCGTGCTCATTCGATAGTGGTTACATCTACAAGAGAAAGCAGATCAACTTCACAAATGTCATCCTATGGTTGTTTGTTTAAGTGTGCACAAACGTCCCTCCGCATTTTCGAATAGGTGTTTGTCACATTTAGGCGTTAAGCGAAATGGGGCTTCCAAGTGTCAAGACCTCCCAGCTGTATGAATTCTACCTGTGAATCCAGACGAAATAGAATCGTGGAGCTGCCCAGGTGACAGGTGGAGCCCAAGATGCATGTGGAGGTGCAACTCCCAGCTGGTAGTCATGGACACCATTGTCCCTGCAGCATTGGAAGTGACATAATGTCGGAGGAGGATGAACGTCGAGTCGCTACCCAGTCTGTGAACAGCCCCTTGGGATTGGACCTGATCCTAGAGCACACTGAGCCCCTACTTTCTGAGTCCCATTTCCTTCCTCTTCTAGATATCGGTGAGGAGCCCCAAGACTGTCTGCCACTGGGAAGCTGCTTGATCCAAGATGGAAGCCTGTCTCTGGATGGATGTGTCCAGCTGGAAAGAAAATGGGTGCTATGGCATGAGTTCATGAAGGAGTGCTCCTCTCTCGGCGACTGGCTCCAATTGGCTGAGAAGTCTGCCGACTCCCCGAGATCTGCCAATGTGCTCTTTGTTACTGCCAAGGAGGAGCTCAAGAAATTTGAGAGCCTGAGGACCCAGGCTGGGGCTCGGTTAGTGCAGCTGGACAGTCTGACCCTTAGGAACAGGACCCTGACCAGGCTCTTTGATGGGGCCATGCGGTCACGCCTGCTGGGCATGGCCAAGGACTGTGGTCAGCGCTGGGACCGCCTACACGGAACCGTTGAGAGTGTCTGCCGCAGACTCAAGCACCGTGTGTCCCAGCGGGAGGAGTTTGAGGGCCAGAGGGAGGAGATGGCTGTGTGGCTTGCTGACATGGACCTTAGGCTGACCGAGGTGGAACACTTCTCTGGAAGGGACACCTGTGACAAGATGCGGGAGCTGCAGaCCTTCCAGGAGGCAGTGGGGGAGAATGCGAGGCGTCTGAACTGTCTCCTGGAGCGGGGTGAGGCGCTAATCCAGAGGAGCGAGCCAGAGGACGCCCAAGACATCGAGGCGGGGCTGCAGGAGCTGCTGCTCTACTGTGCCCAAGTATTTGAGGGAGTGGGCCGTCTGCACACACGCCTGCTCAGCATGAGACTGGTGTATGAGGATGACTGGGTACTGACTCAAGCCTCTGACTCCGGCTGTCCATCTGAGATCCTGTTGGAGCAGGATGGTGTGTTTGAGAAGAGCAGCGCCCCAGACCAGCGGAACCCCCCCAACCTGGACCACATGGTGCTGGAGTGGGACCCCTCCGTCGACATCGGGGGCCCCGTCTCCCAATACGACGCTGACTTGTCATATTTCAGCGCCCACACAGGTCGAGAGAAGCCATTGGCCAGAGATGGTGTGAAGAGGCAGAGTTACCTCAGCTCCATAGGCTCTCAGTCTGATCTAAATAACAGCGCAGCAGAGGACATGAGTCTGGAGAGGTTTGAGTATGCAGGTCCAGAGGTGTTCTCACCTCCCACAACCCAGAGTGTCAGAGATGACAGACCTCTACTCTCTGGCCGCTGGACGACCTCCACGCCCGATGGACCCTCCCCGGAGCCTGTGACCTTTGACCCTGCTCGCATCAGCGCTTGGCTGGGACAGACGCGTGGCCACACCGTCCCCACTAGGGTCCTTTCGGTCCAACAGCACAGAGCCTACTCCAAGGCTGTCCAGACCGACAGTACTGGGAAGtgtgcttGTTGCTCTGAGGGAAGCCACAGTCTTGGGGACATTGCTGTTCAGACACACGCCCAGAAGCTGTGCTTGGCCGCCTGCAATTCACAGTCATGTGACCTCCAGCTCCAGTCTGATACGATGACTTGTAGACTTCAATCAAACCCACAGTCTCCAGAGGAAGAGCTGCACTGCAATGCCTCATGGGAGGTGGTCCATAGTGAGCAACTGCCAAATGAGTGCCCTGACAGACAAACCCAGTGCAGCTCGTGGCCCCTGGGGGCACTAAAGACTCTGAGGAGCCCAGTGTTCCTGGTCATCCTGCTGGCTGTGTTCCTAGCCCTGCTGGTCTGGCCCACAACACTCTTCATGGACCCAGAGTGCCACCGCTCCAACTCCCTTGCCCGCACCTTCCAACTGGCCCTGAGCTACGTCAACGGGCCCCCGCCAACATGAGGGACAAAAGTGTCCCAGAAGGTGGTCACATTAAATCCGTGGTGAGCCCTGAACACACCTTATTCAGGGGGGACAGTCCCAGAAAGCCTTTCCATTTCAAAACCATGAGTAAGGCATTAACAAGGAGGCCGTATGAGAAATGAGAGAAATTAAGAACTATTAGGCCCAATAAAAATGTGGCCTTGGTATTTATTATCTGAATCCCTCCACCAGCCTGCTGGCAGAAGTAGCTCATGACTTAATAGGCCTCATTTTATAACGCTCTCTAATGGCATTCATAATGTCTTACTATGCCAGGGTAGCACTTTagttgattggtctgtcatgaTGGATTTGTAACTTATTTATGTGGTGATTATAATCTATATGGACGACTTAATGACAGCAAATACTTTGAGCAATTCTCTTTTGGGCATTTGAAATGATCTGTATATCAATATTTATTATGTCAAAGCTAGAGAGAGCTTTCGATTTATTCTGCACTCTATATTGCAAGAGCTTGGGACTATTGGTTCGATCTGCATTTTTGTCCAAATTGAGTTATTGATCaagccttgttctgttcaatgttctctacccATATAGTACTCAACACCCCAATCTTGTTAAATTCAAAAGAATATCAGACAAACATTGCTGACACCTTTCAAACCATTGAGGGTTTGGAACTTTgaagccaattatctcagaatcatctATTTGCAGGTAATCGTTAGTCCCAAGCTCTCCATTTCACATGGGGTTTCCTCAAATGAATAATACTGAATGCCCGAGTTCGGATTTACTAGGGCGACTTGCAGAGATAACCCATTTGTAGGTCAATGGGATAGGTGACCTGGTTAATGCACTTAGGATAAATTAGCACTCCTTTTGTGCTGCCGCTGTGGGTGAGACCTTGTTTGCATGTGCGTGGGTCGTTCGTATATACTCAATGAATTTCTTTTACATCTGCTGCGACGCCAACGGGGTCCAGCTGGAAAACAATCAGGCAAAAGGCAACTCATCTGAGGCCAGTGAAGACCGTGTAAgcctctaaacatactgtatgtgttatgtaaTGGTTTATGGCTATGTTTTTGACATAGTGGATGCAATCCTGGATCTCATCCGTATgtcaca

Function

NR:

description
nesprin-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587511.2 False 3130 mRNA 0.50 11 9624914 9640110
XM_021587510.2 True 3393 mRNA 0.51 12 9624915 9640110

Neighbor

gene id symbol gene type direction distance location
LOC110507488 LOC106580752 coding upstream 5440 9597156 ~ 9619474 (+)
LOC110507484 LOC106580753 coding upstream 85922 9506485 ~ 9538992 (+)
LOC110507479 LOC106580747 coding upstream 351205 9271841 ~ 9273709 (+)
LOC110507063 hipk4 coding upstream 412851 9209754 ~ 9212063 (+)
LOC110507469 sertad3 coding upstream 494179 9128031 ~ 9130735 (+)
LOC110507491 LOC106580758 coding downstream 6577 9646687 ~ 9658211 (+)
capn4 LOC106580760 coding downstream 30654 9670764 ~ 9677392 (+)
LOC110507494 LOC106580760 coding downstream 59683 9699793 ~ 9705322 (+)
LOC110507495 LOC106580895 coding downstream 65520 9705630 ~ 9714582 (+)
trnar-ucg-6 NA coding downstream 84435 9724545 ~ 9724617 (+)
G2049554 NA non-coding upstream 31336 9565140 ~ 9593578 (+)
G2049558 NA non-coding upstream 62988 9559076 ~ 9561926 (+)
G2049556 LOC106580756 non-coding upstream 67406 9548632 ~ 9557508 (+)
G2049533 NA non-coding upstream 91289 9533333 ~ 9533625 (+)
G2049555 NA non-coding downstream 21987 9662097 ~ 9664055 (+)
G2049560 NA non-coding downstream 76136 9716246 ~ 9716755 (+)
G2049559 NA non-coding downstream 80286 9720396 ~ 9721576 (+)
G2049640 NA non-coding downstream 125941 9766051 ~ 9766274 (+)
G2049676 NA non-coding downstream 175673 9815783 ~ 9816006 (+)
G2049339 LOC100380674 other upstream 216343 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 900611 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2366684 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2373339 7245806 ~ 7251575 (+)
G2045665 NA other upstream 2904222 6719764 ~ 6720692 (+)
G2049657 NA other downstream 147696 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 639000 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 748891 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 766263 10391240 ~ 10417311 (+)
rap1gap2a LOC106580794 other downstream 935600 10494894 ~ 10583085 (+)

Expression


Co-expression Network