LOC110507491 (LOC106580758)


Basic Information

Item Value
gene id LOC110507491
gene name LOC106580758
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 9646687 ~ 9658211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587512.2
gggtggggtgggtgaTCTCCATGGTTGCTAAGGGCAACGGGTGAGCTAGATGGTCTGTATTTGCGGAGCCGCAGCTGCGCGTCTGTTAATACCAACGCGACCCTCACGTCCCCGCGCAATTCTCCACACTGGGTTGGCTGCTTCAAGGCATGAGGATGCGAGCAGGGATTTAGTTTGTGTCTTTTCCCGTCTGGAGCAGTTTATTACCTTTCTCCCGCACACAGAAACGGATTTAGCCACACGAAACAAGGTTCGTGGCCCCCATTCTCACCACGGAATATGATGCAGAGGTCCTCCTCTCCGAAGGGAAGTTGGATGGGAATACTGCCATACGTGTCAGCTCGTGATCAATGAACTCAGTCCATTCAATCACTAAAGGAACTAACCTGAACTACTGAAGAAAAAGAGGGGATATAACGACACAGACACCTTTTTGCGGATATGGCGGCGACAGATGCATGTGCAGCACCTGTACAGGAAGATGGCACCACCACCACCGAGACCAAAACAGAGGTGGAGCCCACAAACTCAGACACTGTCACAGAGGCTGTCACGTCTCCACCCGAAGAGGTACAACCTGCCGGAGAGACCACAGAGAGCACAGAGCAGCCGGCCGATGGCAAAGCTAAACAGGCCTCTGAGAATATTTTCTCTTCCTTCCTGAATAAGAGTGGACTGGGAAAAGTCATGggagggaagaagaagaaggagcagAGCACTGAGGCTGTGGAGGCTAATGGAGAGGGCAACACAGAGCAGAAAAAGGCCTCTGCCCAAGCAGAAGAGCCGGCAGCCAATGGCACAGAGGCAGCGGCAGAGGACCAGGCCAATGAGAAAGTGCCGGAGAACCAGGTGAAGGTCCGATCCAAATCCTTGGACAGGTTAGAGGACCCTGAGGCCCTCAATGCCACAGTGGACACATTGGAAGATGTCCCGGCAGCAGAAGAGTCAGAGAAGCCTGCCTCTAGTGCAGCGACCAAACACATGAAACGCTGGCATTCCTTCAAGAAGCTTATGGCCCAGAAGAGTCACAAGAAGAGCACAGAAGAGTCTAAGGACGCTGAGGGCAGCGAGGGTGCATCTGGGGGCACTCCTGGTGACACAAGTACACTGGACTCCAAGGCCTCAGAATCCAGTGGCCAGAAACGGTGGAAACTGAAAAGGTCATGGACATTCCAGGGGCTGAAGAGAGACCCGTCAGTCATAGGCATCAGCAAAGCCGATAAGAGCGAGAAGGCGGAAGGGGAGGAAAACCCCACAGAGAACGATGAAGCGGCTGCGCCTGAAACAGACGAAGCCAAGGCACAGGTAGACGGTGAAACACAGGAGAAGACCAACACAGACGGAGAGGAGGAAAAAGGAGCCACCGCCGCCCCACACAAATCAATGAACCAACACGCAGATGAGATCTGGACCTCCTTCAAGAAACGTGTGATCCCCAAGTCCAAGCGGTCAGCAGACACGGTGGCTGCCAGCGGGGAGGAGGAAGGTGCTGCTGCATCTGAACTGGCCGAGCAGACGGAAGAGGCAGGTAAAGAACAGGCCAAGTCGGCCAAGACCAAGCGAACGCACTTCAACCGTGCCGTTTCGCTGAAAAACTTCATCATGAGAAAGGGGAAGAGCACCAGCGTGGACCAGGGAGACGGAGCTCCGAAAGAGGGTGAGGAGGCAGAAGACGGGGAGGCGAAGAACACAGAGGGCGCGGCTGCCCCAGCTGGCACGTCTGACAGCCGGCAGGGAGAAGCAGACGCTGCCCAGGGCGAGAGCAACGACAAAGGAGAGGTTCAGGTGGTCAATGAGCACACAGTCGCCGACGGAGAGGCAAAGGAGCCCACAACGAGCACACCGTCTGGTCCTGAGCCAGAGAAGGCCAACTCAGCTAAGCCCGCAGCACCAGCAGAGTCCGTGGCAGAGGTGAAAATCAACGGTGAGAATGGGTGCTCGAACGGCACGCCCGAAGAAGACGCCATACACAATCATGAAACGACCCCGAAGAAAGACGGACCAACAGACGAGGCCAAACAAGAAAACACAAACTCCATGAAGGACGCGAAGATGCTGAACCTCGGTACAGGAAATGCAGTTGCCCAAATTGAGAAAAAGGCGGGAAACGTGTGACGACACACAAAGAGGATTAGATCTGCATGGGATTCGTTCAGCAAGGAgatttgacacccccccccccccccccccccccccaacggaGTAATCACATGTTTTTCGCCACGATTCTTCATGGTGAGAGCGATGCAATCCATATAGATGAAAAAATACTCAAAAGCAATAAATCAGTCATCAATCAGCGCAGTTCTTGCTTACCATTCCATGATCAAtgtaaatgttttgcttgtcctCTACTAGTGAGATTTTATATTGTCAGCAGAAGGGAAGACATTCCATCCTTGTCAAATGTTAATCTCTATGATCTCTCATTCCAGGATCAAAAATACTTAGTTTTATATCAATTGCCATTTTTGTGTGTAGTTTTGTCAATAGATATTTCAAAGTGCACATTTGAAATGATTGCCCTAAAGACtgcctcccccccacccccaatgtGGATTCCTTAATTAAGTAATGTTTTAATCTCTTTCTGTGTTGTTTTTAGACTGTTGTGTACATGAATAAACCACCATAAAATATGaagtcaaaatgttttttttttcttctaaacaCATCTTCTCACTGTTAATGCAGATTGATCTGCCGTTGATATGTTTTGTTGATCAATGATGTCACGTGTTCGCTAGGAAATTGTCAAAAACTAGAACAATAAAGATTCAAATCGAACTAAAAAAAA

Function

NR:

description
A-kinase anchor protein 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587512.2 True 2800 mRNA 0.51 3 9646687 9658211

Neighbor

gene id symbol gene type direction distance location
LOC110507489 LOC106580757 coding upstream 6577 9624914 ~ 9640110 (+)
LOC110507488 LOC106580752 coding upstream 27213 9597156 ~ 9619474 (+)
LOC110507484 LOC106580753 coding upstream 107695 9506485 ~ 9538992 (+)
LOC110507479 LOC106580747 coding upstream 372978 9271841 ~ 9273709 (+)
LOC110507063 hipk4 coding upstream 434624 9209754 ~ 9212063 (+)
capn4 LOC106580760 coding downstream 12553 9670764 ~ 9677392 (+)
LOC110507494 LOC106580760 coding downstream 41582 9699793 ~ 9705322 (+)
LOC110507495 LOC106580895 coding downstream 47419 9705630 ~ 9714582 (+)
trnar-ucg-6 NA coding downstream 66334 9724545 ~ 9724617 (+)
LOC110507496 LOC106580761 coding downstream 66782 9724993 ~ 9728775 (+)
G2049554 NA non-coding upstream 53109 9565140 ~ 9593578 (+)
G2049558 NA non-coding upstream 84761 9559076 ~ 9561926 (+)
G2049556 LOC106580756 non-coding upstream 89179 9548632 ~ 9557508 (+)
G2049533 NA non-coding upstream 113062 9533333 ~ 9533625 (+)
G2049555 NA non-coding downstream 3886 9662097 ~ 9664055 (+)
G2049560 NA non-coding downstream 58035 9716246 ~ 9716755 (+)
G2049559 NA non-coding downstream 62185 9720396 ~ 9721576 (+)
G2049640 NA non-coding downstream 107840 9766051 ~ 9766274 (+)
G2049676 NA non-coding downstream 157572 9815783 ~ 9816006 (+)
G2049339 LOC100380674 other upstream 238116 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 922384 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2388457 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2395112 7245806 ~ 7251575 (+)
G2045665 NA other upstream 2925995 6719764 ~ 6720692 (+)
G2049657 NA other downstream 129595 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 620899 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 730790 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 748162 10391240 ~ 10417311 (+)
rap1gap2a LOC106580794 other downstream 917499 10494894 ~ 10583085 (+)

Expression


Co-expression Network