capn4 (LOC106580760)


Basic Information

Item Value
gene id capn4
gene name LOC106580760
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 9670764 ~ 9677392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124331.2
GGGTTTGTACCAAAAAGGAGTGCCGTCAAGTCAGTATCTGCCGAATTCAGCAACGCATTTGTTCCCTATTTTCGCCTCTGTCCCTTCACAAGATGTTTCTGGCCAAAAGACTCATTGGTGGCATCCTGGATGTTGTGAGCAACATCGACCCTGGTCAATTTGTGCCATCAGATCCTCCCCCACCACGCAGACCTCTGGCCTACGCGGAGCAGAATGAGAACGACGAGGAGAGACAGTTCCGCAAGGTGTTCCAGCAACTTGCTGGGGATGACATGGAGGTGAGCCCCACTGAATTGATGAACATCCTCAACAGGATCATTGGCAAACGTAGTGACCTGAAGACTGATGGCTTTAGCATCGAGTCATGCAGGAGCATGGTGGCTGTCATGGACAGCGACAGCACAGGAAAACTAGGTTTCCATGAGTTCAAGTTTTTATGGAACAACATCAAGAAATGGCAGTGCATCTACATATCAAATGACGCGGACCGCTCCGGGCTCATCTCCTCACAAGAGCTTCCTGCTACCTTCAAAGCTGCAGGCTTCCCTCTCAACGACCAGCTCTTCCAGTTGATGGTCCGCAGGTACAGTGATGAACAGGGCAACATGGACTTTGACAACTTCATTGGGTGCCTGGTCAGACTGGACGCTATGTGTCGAGCTTTCAAGACTCTGGACAAAGATGATAATGGAACTATCAAAGTCAACATCCAGGAGTGGCTTCAGTTGACCATGTACTCATAAAACATCAGGGAAAGCCTACAAAAAGCCTTCATTAATCTCTCGCTCCATTTTAAGATTTGTATTTTATATTACCATTGTTGTTATTGTTTGACAGATGTTCACACATCATTGTCGTGAATGTTCATTCAATTTATCACTAGATAGCAGCATTGCAGAAACACCAGGAAAGCACACATTTACTTTACTAGACTTTCTACAGTCCAAATATTTGAACGtttttgtgttttccttttttCTGGCAGCACACCTTTGGTCAAACATTCCACACTGCTATGTAATGTAATATATACATTCTAGTGCTCAATAAAGGGGGAAATATTACCTAA

Function

NR:

description
calpain small subunit 1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08583 CAPNS1, CAPN4; calpain, small subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124331.2 True 1069 mRNA 0.45 11 9670764 9677392

Neighbor

gene id symbol gene type direction distance location
LOC110507491 LOC106580758 coding upstream 12553 9646687 ~ 9658211 (+)
LOC110507489 LOC106580757 coding upstream 30654 9624914 ~ 9640110 (+)
LOC110507488 LOC106580752 coding upstream 51290 9597156 ~ 9619474 (+)
LOC110507484 LOC106580753 coding upstream 131772 9506485 ~ 9538992 (+)
LOC110507479 LOC106580747 coding upstream 397055 9271841 ~ 9273709 (+)
LOC110507494 LOC106580760 coding downstream 22401 9699793 ~ 9705322 (+)
LOC110507495 LOC106580895 coding downstream 28238 9705630 ~ 9714582 (+)
trnar-ucg-6 NA coding downstream 47153 9724545 ~ 9724617 (+)
LOC110507496 LOC106580761 coding downstream 47601 9724993 ~ 9728775 (+)
LOC110507497 LOC106580762 coding downstream 51533 9728925 ~ 9731448 (+)
G2049555 NA non-coding upstream 6709 9662097 ~ 9664055 (+)
G2049554 NA non-coding upstream 77186 9565140 ~ 9593578 (+)
G2049558 NA non-coding upstream 108838 9559076 ~ 9561926 (+)
G2049556 LOC106580756 non-coding upstream 113256 9548632 ~ 9557508 (+)
G2049560 NA non-coding downstream 38854 9716246 ~ 9716755 (+)
G2049559 NA non-coding downstream 43004 9720396 ~ 9721576 (+)
G2049640 NA non-coding downstream 88659 9766051 ~ 9766274 (+)
G2049676 NA non-coding downstream 138391 9815783 ~ 9816006 (+)
G2049550 NA non-coding downstream 152989 9830381 ~ 9831924 (+)
G2049339 LOC100380674 other upstream 262193 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 946461 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2412534 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2419189 7245806 ~ 7251575 (+)
G2045665 NA other upstream 2950072 6719764 ~ 6720692 (+)
G2049657 NA other downstream 110414 9787806 ~ 9788115 (+)
LOC110507067 LOC106580782 other downstream 601718 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 711609 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 728981 10391240 ~ 10417311 (+)
rap1gap2a LOC106580794 other downstream 898318 10494894 ~ 10583085 (+)

Expression


Co-expression Network