LOC110507512 (LOC106580776)


Basic Information

Item Value
gene id LOC110507512
gene name LOC106580776
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 10121941 ~ 10125425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587549.2
ATTCACCAAACACTTCCTCCCATTGCTCGTAAACAAAGATACTGCTTAACTTCCCCTTTCTGCTGCTATACACAATTAGCCCGGGGACGAGGTTAACAGTTCTGTTGCTCTGGATAAAAGGGTCTGCTAAATGATCGTGTTAGTAACAAaccaccaaccccccccccccatttcatggataataatgttttgtacactcagtgcctGGTTGGTTGCATATTAACTAGAACGACTTCTGAAGAACTGTAAAGTGTCATTTGGAACTGTTATGAATGCCTTGGGCATGACTAGTCTACGATACCACTTATCATAGGGTGGGTTTGTTATACTAATCAATGGGTACTTTTGAAGCAAATGGGAGGTACCTTCTTTACAATGTAGCAGGCTAGGGAAGAGATGTGTTATTGCCGGAACGTAAGTCACAGGAGCATGGACTTGGCTGTCGCAATCTACTGCACTTCTCAATCGTAACATAAAGAGTGGCACCTTCAAATGGCAGCTCACAGTTCAACCACTCTTGGTCAAGACCCATGTATTTCAAAGCGGATCCTGCTTTTActtggagagagactgagtggaaAGAGCTCAGTGGGGAACACCATCTTGGGCAAGAGGGAATTTGACACAGGGATAATGACAACTCACAGCTCCAAGAGGAAGGGCACTGTTGCAGGAAGACAGGTGACTGTGGTGGACAGTCCTGGATGGTACGTCGGGAGCAGCACCCCTGGCAGAGTGGCACAGGAGCTGGGGCGAGCCCTGTCCCTCTGTTCCCTGGGGCCCCATGCCATCCTCCTGGTGGTCTCTGCCATAGGTGACTTCAGTCAGGGAGAATGGAGGGCCATGGAGGAGCACCTGAGGCAGATCCAGGCCCCTATCTGGCAGCGAGCTATAGTGCTCCTCACCCACGGAGCTGAGATACCAAGAGGAACGTCCGCTGAGGAACACATCCGAGGGAAGGGCAAGAGTCTCCTGTGGCTTGTGGAGAGGTGTGGGAACAAGTTCCATGTTCTGGACAGCCACGCCAGGGACAAAGAGGTTCAGGTCCAATTGCTGTTGGAGAAGATTGATAGGATGGTTGAGATAAATAGGCGTCCAAGGGAAATACAGGAGAGGTTGTACACCCAGGTGAGAGAGAGCTTAAGGATGGGAGGAGGGAAACAGCAAGGAGAGGACATGGAAATGCTTGTCATGCAGGACATGAGGACAAGGCAGAACCAGCGGGTCACAGCAGTGGTACCCATAGACACATCTAAATGTAGGCCAGCTGCGTTTGGCCTTGTGCTGCTGGGAAGAAGATGTTCTGGGAAGAGTTCAGCAGGAAATACCATTCTTGGCAGAAGAGAGTTTGGTAGTGGCAAAAGAACAGTCCATTGTGTGGTGggacagggagaggtgggagggaggacaGTCGCGGTGGTGGACACTCCCGGTTGGAGTCTCTACGGTCTGTCCAACCCGAAGCAGGTCAGACTGGAGATGAGAGGCAGTGCATCCCTGTGCCCCTATGGGGTAGTTTGTACATTCCTCTTGGCCATACCTGTTGACTCCTTCACAGAGAAAGATAGGTGTGCTGTGGAGAAATACCTGAGTGTTTTGGGTGAGGGGGTATGGCGAAGCACCATGGTGCTTTTCACCTATGGTGATGAGTTAAGAGGCAGAACCATTGAGGAGCACATTGAGGAGACTGGAGAGCCCCTCCGTGGGCTGCTGGGGAAGTGTTGTCACAGGTACCATGTCTTAGATAACAATATTAAGGGCGATCTAACCCAGATTATCGAGCTGTTGCAGATGGTGGAGCAGTTGTAGACACTGGATCATTCACCTCTGCGGATAACACCCTGTTAATTAAAACGGTTGAAATTATACATTGATGTAATTTGCGCCAAATTATTTAAAGTAAGTTCTTGTATGGCCTTATCTAAAACAAAATGTCTATGTTCTTCTGTATCCAGTCAAATCATTTAAAAGGTCCACTGCAGCCAAAAATGGGGTttaatatatatttccacaccatgaggttggaataatactgtgaaatagtGAAAATTAGGATAATGTCCTTTCAGTGTTAGAGTTGTTTGATAAAACCACCTGAAACCTCTGTCTGTTTTGGTGGGATATGGTTTTGGTCTTTCCATGGTGACATTACCATGCTGTAATTTGACATTCCTCGATTAGACTATATTTGAAGGAAAACATAGATTATATTAATTCAATTATGATTGGCTTGATTAAGTTACCAATGTTAGATGTAGACAGTTCAGGAATACTTACTTTTCCCCTTTTGATAAGAAATGATCATACTGTATTAAGTCTGTATTAAGTTTTTAttaatgtattaaatacattggAAATGAAAAGTAAGTCAACCAACAACACAAGCTTTACATTAATAAAAATGTGTCGAGTAAATTGCCACAGTAGATTCTCTCTTGTAAACAAGGAAATACCTACTATCAATTTCAACGGAATTGATAGTTCTCAAAGAGTTAAAGCTATGCTTAGTCTGCTCAAACATTAGGTTTATTTACACTGAATGTAATACCCACCAGACGGATAAATAGTCTTGAACATGTTTGGCAGCAAACACTGCAGTCAACATTGTTTTTCCTGTGTTTTCTATCacattgtacaacagctgatgaaactaacactgtaaaattGTGAGAAAATGTGATCACTGTTATttccagccgcgtcctcagagcatgctggttggtgtgtttacggacatattcaat

Function

NR:

description
GTPase IMAP family member 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587549.2 True 2744 mRNA 0.45 3 10121941 10125425

Neighbor

gene id symbol gene type direction distance location
usp2a LOC106580775 coding upstream 416 10079901 ~ 10121525 (+)
LOC110507511 LOC106580774 coding upstream 42547 10057431 ~ 10079394 (+)
LOC110507509 LOC106612674 coding upstream 61322 10023660 ~ 10060619 (+)
LOC110507507 LOC106580771 coding upstream 103004 10009512 ~ 10018937 (+)
LOC110507503 rnt2 coding upstream 283342 9835478 ~ 9838599 (+)
LOC110507514 LOC106580778 coding downstream 21132 10146557 ~ 10150651 (+)
LOC110507516 LOC106580779 coding downstream 31207 10156632 ~ 10164715 (+)
LOC110507517 LOC106580780 coding downstream 68255 10193680 ~ 10213605 (+)
sebox LOC106580896 coding downstream 92095 10217520 ~ 10218686 (+)
LOC110507518 LOC106562846 coding downstream 105280 10230705 ~ 10233860 (+)
G2050017 NA non-coding upstream 99196 10019610 ~ 10022745 (+)
G2050046 NA non-coding upstream 114045 10007697 ~ 10007896 (+)
G2050002 NA non-coding upstream 149088 9972597 ~ 9972853 (+)
G2049999 NA non-coding upstream 150846 9970888 ~ 9971095 (+)
G2050109 NA non-coding downstream 66562 10191987 ~ 10192242 (+)
G2050122 NA non-coding downstream 89219 10214644 ~ 10214948 (+)
G2050123 NA non-coding downstream 93828 10219253 ~ 10219615 (+)
G2050164 NA non-coding downstream 186663 10312088 ~ 10371018 (+)
G2050178 NA non-coding downstream 250684 10376109 ~ 10377333 (+)
G2049657 NA other upstream 333826 9787806 ~ 9788115 (+)
G2049339 LOC100380674 other upstream 713370 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 1397638 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2863711 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2870366 7245806 ~ 7251575 (+)
LOC110507067 LOC106580782 other downstream 153685 10251889 ~ 10282483 (+)
LOC110507523 LOC106580787 other downstream 263576 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 280948 10391240 ~ 10417311 (+)
rap1gap2a LOC106580794 other downstream 450285 10494894 ~ 10583085 (+)
LOC110507540 git1 other downstream 649662 10755190 ~ 10778403 (+)

Expression


Co-expression Network