LOC110507516 (LOC106580779)


Basic Information

Item Value
gene id LOC110507516
gene name LOC106580779
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 10156632 ~ 10164715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964641.1
TGTATTTTCGTGACTTTACAGCGCCACTCATGAGGTGCTAGGCATCCAGTCTTTACAACAGGTGCCTTGGCTGCCTTGTATGCTGGTGGATGAACTTGTAAAGTTCAATGATGAGGGACATGCTGAAACCCAGTATCAACACAGAAACGCTGGGCTGCAGTTTGGCCATCCAGGGGACAGTGCATTGAACCCTAATGCCATCACCTTCCTTGTTACAGGCTCTAAGGTGGACATGAGGAAGTACATTGAAGGAGCAGTAGTGGAGCACCAGCTGCAGTGTGAGATCCGCAGGTACAGCACAGAGGGTATCCAGATGCGTTGGCCAGGTTTAGGAGCCCAGGATCACGACATCTGGTTCACCAGCACCTTACGGCACACCGACGGCCACTTCGTCATCACCAGCTTCCTCAGACATACCCCTGCCACACCCACACCTGGCCAGGCAGACTACCGCAACTGGCCCGCCATCGCAGACAGAGAGATGCTAACCACCTCAActgcGATGCTAGTCTTCACCCGCACTCCCTCTGTGTGGGTGGGCCTAATGAAGCAACCGAGCCTGCACTGTCAGTTTGACGTGGACCACAAGGCAGTCGACTTGACAGTGGAATGGCGTTTGCAACGACGCGGCGAACGGACCACGCTCTTCAGCCACTCCAGACGCTCGGGCCaaagggaggggggtggggtggagctTAAGGGCATCGGTAGGGGCGACGCATCCCTGACGCTCCCCCTCACCAAGCAGAGCAGCGAGGGGACATATGTCTGCCTTGTCTCGGTGCCTCCGCTGTTTGGCAGCCATGAAATCGCTCTGCACATCATGGAGCCTCCTCGCGTGTCCTTGAACGTGGACTCTGTCATCTCCTTGGTGGAAACGGAGAAGCAGAAGGTGGTGTGTGAGGCAGAGGGCTACTACCCCCTGGACGTGGAGATGGAGTGGTTCAGGGAGCccagtggtggaggtggaggcctCCTACCAGAGAAGCTGGACACTGTCCTGTACTCCAGCCACCGCCACCACCAGGACGGGACCTACTCTCTGTCGGCCTTCTTCCTGCTCCACGCTTCCCTGCATGACTCGGGCTCCAAGTACTTCTGCAGGGTGTCTCACAGCTCCCTGCGCATGCCCATCCGCAAGAGTTTCACCCTCATCGTCACAGAGGTTGACAGTTGGAACTTGCTGTGGTTGTTCTTTGGCTGTGGATTCATCCTGGTCATGGTGGCCACTTTGTGTGTGATGCTACCCCGCCTGAGCTCAGCAAGAGCAGCAAACAAGAGAAAGCCCTACTGAGAGAACATGCCAGAGTGGTTAAAGCTGATCTCCATGGATACAGACAGTCCATTCCtaccctccttcttctcctccttctcttcatctCAGTACTTCTCTATCAGGTGGTTTATTTTGGGAATGTGGGTATAGTGTGTGTCCATCAAGTCATTTGATATGGGGTAATGTTTCTTCCGATTCTCCCATtataaaagtacagtaaatgtagaAAGATTGATCATGTGTTTTTCATTATTTGGGAACGAGGGACTATCCCACAAGGTCATAGTACTGCTCTATGATAATACCACTCTAAGATTGTGTAAGGTAGCTTAATTTTGCTATAAAAAATAATTGACATGGAATGATGATTTTCTTTTAGAAAAATGCACGATCATGTTTGATTTGAAAATATGCactaagaaatgtat
>XM_021587553.2
ggggtgtatgtttAGTTGCATTTTGTAACAGTTTCTTCCTCATTCACATATTATCGGATGATATTTAGTTTACTATTACAAGCCATTGTAAAAATCTAACGTTAACTTGTCTTAGGCAGCTGCACGAGCAGATTCTATTTTTTTTCACTTGCGTCAAATTGCCGAAATGAAAGTGAAAGTTCTGTGGAGTCGAATGGCACAGGGAAAGACATCTCCGGAAGACAGTTTTGTAACATTATGCGTTTAaacgtcaatattgttatctgttTATTTCTCTGTGCAGAGGTGCTAGGCATCCAGTCTTTACAACAGGTGCCTTGGCTGCCTTGTATGCTGGTGGATGAACTTGTAAAGTTCAATGATGAGGGACATGCTGAAACCCAGTATCAACACAGAAACGCTGGGCTGCAGTTTGGCCATCCAGGGGACAGTGCATTGAACCCTAATGCCATCACCTTCCTTGTTACAGGCTCTAAGGTGGACATGAGGAAGTACATTGAAGGAGCAGTAGTGGAGCACCAGCTGCAGTGTGAGATCCGCAGGTACAGCACAGAGGGTATCCAGATGCGTTGGCCAGGTTTAGGAGCCCAGGATCACGACATCTGGTTCACCAGCACCTTACGGCACACCGACGGCCACTTCGTCATCACCAGCTTCCTCAGACATACCCCTGCCACACCCACACCTGGCCAGGCAGACTACCGCAACTGGCCCGCCATCGCAGACAGAGAGATGCTAACCACCTCAActgcGATGCTAGTCTTCACCCGCACTCCCTCTGTGTGGGTGGGCCTAATGAAGCAACCGAGCCTGCACTGTCAGTTTGACGTGGACCACAAGGCAGTCGACTTGACAGTGGAATGGCGTTTGCAACGACGCGGCGAACGGACCACGCTCTTCAGCCACTCCAGACGCTCGGGCCaaagggaggggggtggggtggagctTAAGGGCATCGGTAGGGGCGACGCATCCCTGACGCTCCCCCTCACCAAGCAGAGCAGCGAGGGGACATATGTCTGCCTTGTCTCGGTGCCTCCGCTGTTTGGCAGCCATGAAATCGCTCTGCACATCATGGAGCCTCCTCGCGTGTCCTTGAACGTGGACTCTGTCATCTCCTTGGTGGAAACGGAGAAGCAGAAGGTGGTGTGTGAGGCAGAGGGCTACTACCCCCTGGACGTGGAGATGGAGTGGTTCAGGGAGCccagtggtggaggtggaggcctCCTACCAGAGAAGCTGGACACTGTCCTGTACTCCAGCCACCGCCACCACCAGGACGGGACCTACTCTCTGTCGGCCTTCTTCCTGCTCCACGCTTCCCTGCATGACTCGGGCTCCAAGTACTTCTGCAGGGTGTCTCACAGCTCCCTGCGCATGCCCATCCGCAAGAGTTTCACCCTCATCGTCACAGCAAGAGCAGCAAACAAGAGAAAGCCCTACTGAGAGAACATGCCAGAGTGGTTAAAGCTGATCTCCATGGATACAGACAGTCCATTCCtaccctccttcttctcctccttctcttcatctCAGTACTTCTCTATCAGGTGGTTTATTTTGGGAATGTGGGTATAGTGTGTGTCCATCAAGTCATTTGATATGGGGTAATGTTTCTTCCGATTCTCCCATtataaaagtacagtaaatgtagaAAGATTGATCATGTGTTTTTCATTATTTGGGAACGAGGGACTATCCCACAAGGTCATAGTACTGCTCTATGATAATACCACTCTAAGATTGTGTAAGGTAGCTTAATTTTGCTATAAAAAATAATTGACATGGAATGATGATTTTCTTTTAGAAAAATGCACGATCATGTTTGATTTGAAAATATGCactaagaaatgtat
>XM_021587552.2
ggggtgtatgtttAGTTGCATTTTGTAACAGTTTCTTCCTCATTCACATATTATCGGATGATATTTAGTTTACTATTACAAGCCATTGTAAAAATCTAACGTTAACTTGTCTTAGGCAGCTGCACGAGCAGATTCTATTTTTTTTCACTTGCGTCAAATTGCCGAAATGAAAGTGAAAGTTCTGTGGAGTCGAATGGCACAGGGAAAGACATCTCCGGAAGACAGTTTTGTAACATTATGCGTTTAaacgtcaatattgttatctgttTATTTCTCTGTGCAGAGGTGCTAGGCATCCAGTCTTTACAACAGGTGCCTTGGCTGCCTTGTATGCTGGTGGATGAACTTGTAAAGTTCAATGATGAGGGACATGCTGAAACCCAGTATCAACACAGAAACGCTGGGCTGCAGTTTGGCCATCCAGGGGACAGTGCATTGAACCCTAATGCCATCACCTTCCTTGTTACAGGCTCTAAGGTGGACATGAGGAAGTACATTGAAGGAGCAGTAGTGGAGCACCAGCTGCAGTGTGAGATCCGCAGGTACAGCACAGAGGGTATCCAGATGCGTTGGCCAGGTTTAGGAGCCCAGGATCACGACATCTGGTTCACCAGCACCTTACGGCACACCGACGGCCACTTCGTCATCACCAGCTTCCTCAGACATACCCCTGCCACACCCACACCTGGCCAGGCAGACTACCGCAACTGGCCCGCCATCGCAGACAGAGAGATGCTAACCACCTCAActgcGATGCTAGTCTTCACCCGCACTCCCTCTGTGTGGGTGGGCCTAATGAAGCAACCGAGCCTGCACTGTCAGTTTGACGTGGACCACAAGGCAGTCGACTTGACAGTGGAATGGCGTTTGCAACGACGCGGCGAACGGACCACGCTCTTCAGCCACTCCAGACGCTCGGGCCaaagggaggggggtggggtggagctTAAGGGCATCGGTAGGGGCGACGCATCCCTGACGCTCCCCCTCACCAAGCAGAGCAGCGAGGGGACATATGTCTGCCTTGTCTCGGTGCCTCCGCTGTTTGGCAGCCATGAAATCGCTCTGCACATCATGGAGCCTCCTCGCGTGTCCTTGAACGTGGACTCTGTCATCTCCTTGGTGGAAACGGAGAAGCAGAAGGTGGTGTGTGAGGCAGAGGGCTACTACCCCCTGGACGTGGAGATGGAGTGGTTCAGGGAGCccagtggtggaggtggaggcctCCTACCAGAGAAGCTGGACACTGTCCTGTACTCCAGCCACCGCCACCACCAGGACGGGACCTACTCTCTGTCGGCCTTCTTCCTGCTCCACGCTTCCCTGCATGACTCGGGCTCCAAGTACTTCTGCAGGGTGTCTCACAGCTCCCTGCGCATGCCCATCCGCAAGAGTTTCACCCTCATCGTCACAGAGGTTGACAGTTGGAACTTGCTGTGGTTGTTCTTTGGCTGTGGATTCATCCTGGTCATGGTGGCCACTTTGTGTGTGATGCTACCCCGCCTGAGCTCAGCAAGAGCAGCAAACAAGAGAAAGCCCTACTGAGAGAACATGCCAGAGTGGTTAAAGCTGATCTCCATGGATACAGACAGTCCATTCCtaccctccttcttctcctccttctcttcatctCAGTACTTCTCTATCAGGTGGTTTATTTTGGGAATGTGGGTATAGTGTGTGTCCATCAAGTCATTTGATATGGGGTAATGTTTCTTCCGATTCTCCCATtataaaagtacagtaaatgtagaAAGATTGATCATGTGTTTTTCATTATTTGGGAACGAGGGACTATCCCACAAGGTCATAGTACTGCTCTATGATAATACCACTCTAAGATTGTGTAAGGTAGCTTAATTTTGCTATAAAAAATAATTGACATGGAATGATGATTTTCTTTTAGAAAAATGCACGATCATGTTTGATTTGAAAATATGCactaagaaatgtatttgtttgaaGTTATTGTTTTCATTAATTTCATGTATTTAATAGTTGCTGTTGTTTTGACTGTTTTCGCTCTAGAGAgccagtgtcAGAGAACCTGAGGAACCTACTGGGaacataacttaaaagcatgtctgacatgtattggggtgcacaatcatggattgatttaaaaaccaatagaagaatCTTAACATTAATTCTAAAACTCATAGGGAGCCAGTGCAGAGGCCTTAAAACCTGTGTAATATGTGCTCTCCCTCTGGTCatggtcagtacccgtgctgcagcGTTCTGTATGTTTAGctgttgaccaatggctttcttgggcagactagacaggagagcattacagaagtcaagcctgcttgtaataaaagcatggatgaatctTTATGTATTAGCCTGCGAGAGAAACGGCCgcaccttggcaatgttcctcaggtggtaaaaagctattttggtcacattcctaatgtgtgatttgaaattgagttcagaatTTAAAATGGCGCCTAGgttttttacctggtgttttatctttattgcccATGAAATTAAAATGTGCGGCCAGATTCTCTCTGTatgctttggctccaacaataagtaGCTCGGTCTTGACTTAGCTGGAGGTTAGCTGAAGTTGTGAGCCAGCCAAGTCtttaaatcactaatacagtctAACAATATATCTTTGGAGCTAAAATCCTTTGGTGCCACAGAAATGTAAAGTTGTGTATCGTCTGTGTAGCAGTGAAATGCAACGCTGGGCTTTCTGATAACGCTGCCAAGAGGCTGTCCGTTTGGATGTGTCCTTTTTCATCCTTACTGGAGCTCTAGCATCAATGGTTGCCCTTCATTTCCTATCAAAGTTGTCCCCTAAATCCTACAGGAGGACTGCAGaataggtgatggagtattgttCATGCACTCAATGAAATCTGGAGCAACTTC

Function

NR:

description
tapasin-related protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964641.1 False 1704 mRNA 0.52 8 10156632 10163388
XM_021587553.2 False 1856 mRNA 0.50 7 10156689 10163388
XM_021587552.2 True 2904 mRNA 0.47 9 10156689 10164715

Neighbor

gene id symbol gene type direction distance location
LOC110507514 LOC106580778 coding upstream 5981 10146557 ~ 10150651 (+)
LOC110507512 LOC106580776 coding upstream 31207 10121941 ~ 10125425 (+)
usp2a LOC106580775 coding upstream 35107 10079901 ~ 10121525 (+)
LOC110507511 LOC106580774 coding upstream 77238 10057431 ~ 10079394 (+)
LOC110507509 LOC106612674 coding upstream 96013 10023660 ~ 10060619 (+)
LOC110507517 LOC106580780 coding downstream 28965 10193680 ~ 10213605 (+)
sebox LOC106580896 coding downstream 52805 10217520 ~ 10218686 (+)
LOC110507518 LOC106562846 coding downstream 65990 10230705 ~ 10233860 (+)
LOC110507519 LOC106580781 coding downstream 71654 10236369 ~ 10250613 (+)
LOC110507067 LOC106580782 coding downstream 87174 10251889 ~ 10282483 (+)
G2050017 NA non-coding upstream 133887 10019610 ~ 10022745 (+)
G2050046 NA non-coding upstream 148736 10007697 ~ 10007896 (+)
G2050002 NA non-coding upstream 183779 9972597 ~ 9972853 (+)
G2049999 NA non-coding upstream 185537 9970888 ~ 9971095 (+)
G2050109 NA non-coding downstream 27272 10191987 ~ 10192242 (+)
G2050122 NA non-coding downstream 49929 10214644 ~ 10214948 (+)
G2050123 NA non-coding downstream 54538 10219253 ~ 10219615 (+)
G2050164 NA non-coding downstream 147373 10312088 ~ 10371018 (+)
G2050178 NA non-coding downstream 211394 10376109 ~ 10377333 (+)
G2049657 NA other upstream 368517 9787806 ~ 9788115 (+)
G2049339 LOC100380674 other upstream 748061 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 1432329 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2898402 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2905057 7245806 ~ 7251575 (+)
LOC110507523 LOC106580787 other downstream 224286 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 241658 10391240 ~ 10417311 (+)
rap1gap2a LOC106580794 other downstream 410995 10494894 ~ 10583085 (+)
LOC110507540 git1 other downstream 610372 10755190 ~ 10778403 (+)

Expression


Co-expression Network